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IPR013170

Source: InterPro

Description

IPR013170 is a mRNA splicing factor Cwf21 domain.

<p>The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) [[cite:PUB00008533]]. In yeast, this domain binds the protein Prp8p [[cite:PUB00053974]], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre [[cite:PUB00053973]].</p> <p>The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein).</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript Name Description Predicted domains Domain count
Lj1g3v5060970.1
– PREDICTED: protein starmaker-like isoform X1 [Cicer arietinum] gi|502124614|ref|XP_004498602.1|
Domains
7
Lj4g3v1073530.1
– PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1|
Domains
26
Lj4g3v1073530.2
– PREDICTED: U2 snRNP-associated SURP motif-containing protein-like isoform X1 [Cicer arietinum] gi|502154212|ref|XP_004509622.1|
Domains
26
LotjaGi1g1v0797800.1
– Serine/arginine repetitive matrix protein 2; TAIR: AT3G49601.1 pre-mRNA-splicing factor; Swiss-Prot: sp|Q7RYH7|CWC21_NEUCR Pre-mRNA-splicing factor cwc-21; TrEMBL-Plants: tr|K7M6I8|K7M6I8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0797800
Domains
7
LotjaGi4g1v0148600.1
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.2
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.3
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31
LotjaGi4g1v0148600.4
– U2 snRNP-associated SURP motif-containing protein; TAIR: AT5G25060.1 RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|Q9C5J3|RRC1_ARATH Protein RRC1; TrEMBL-Plants: tr|A0A0S3R3V4|A0A0S3R3V4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0148600
Domains
31

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 12.50