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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0798400 |
| Transcript ID | LotjaGi1g1v0798400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT3G54770.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9M1S3|ARP1_ARATH Probable RNA-binding protein ARP1; TrEMBL-Plants: tr|A0A0L9VQ30|A0A0L9VQ30_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0798400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:136908207..136910503) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGGCCTAATATAAGGTTGGGCTGGGCCAATCAATTATGTGTAGAGAGACTAGAGAGGGTCAACACAAGAGGTCTTGG TTGGAGCATGAAAGGGGAACATGGGTACTACTACTATTACTCCACACCACTAACTGAAATATTAATTGGTAATTAGTGCG TGTTAATGAAGGAGGGCCAAAACAAGGGGCGTTTTACAGCTATCACTCACATTCCTGTAATTGTGACATTAAATTAATAA AAATGAAGAGGTAGCGAAAGATGAGGGGGTGATCGATCACGTTGATGACGGCTAATCCTCAGTCACAGTCTATCTGTCTT CTTACCTGTCTGTCTGTCCTTCTTGTCCTGCTGTTTTCATATTTACATAATTATTTGGTCTCACCATTTGCCTTTATAAA ATTCCCCCTTCGAACCAAGCTCAATCTGCACCAGCTAGCCTTAGCTACGTACTTAAGTTATTTATTATATATAATTAGTG GATCGGATCTATCCGGCCAATCGATCCATACTCGATCAGTCAGAACCAAGAATTGAAGGAAGAAGATCGATGACGATGCT GAGCACCAACAACAATAACAACAAGGTTGGTCAGTTTGGGGACACCACATTGACCAAAGTGTTCGTGGGAGGGCTGGCCT GGGAGACTCCGAAAGAGATACTGAGAGAGCAGTTTGACAAGTTCGGTGAGATCCTTGAAGCCGTCATCATTTCTGATAAG CTCACTGGCAGATCCAAAGGCTATGGTTTTGTAAGTCCATATATCTTATTCTTATTCCAAAAATAAGGTAATTACTAATT AATGTATATATATATATGGCATTTCACTATATATAAAAGGTGACATTCAAGGAAGCAGAGGCGGCCAAGAAGGCTTGCGA GGAACCAACTCTGATTATCAATGGTCGCAGAGCCAACTGCAATCTCGCATCGCTCGGTGCACGCCGTCCAAGGTCATCAC CCATCCCTTCCCCCTCCCAAACTCCTCCACCTCCACAGGCACAACTAGCAACCAGGCAGGTTCAGTGGTATTATCCCCCT GCAGTTGCACCGGCTGCTTCCCCATACCATCATCAGCCACTTCCTTTCTACGGGTATGTTATTGTTATGTATCACTTTCA CATTCTTTTTCTTTTTAAAATAATCAAATATCTTCAAAATGCATGTATATGCTTTCAAAAATATAATAGTATAATGTTGA GGAGTTGAGTGAGATGAATGGGGAAGGGTCTAGGGTTCGAACTCTAAGGATTACTAATTTATTAACACTACTAATAGCTA ACATTTACCTATAACAAAAAAAATTGTACTAGTATAATGTAGTAATTAAAATACATAAATCTTTTTATTTTTATATTCAG GTACCCGCACACTTACATTGCAGCGCCAGGGGACATGAATTACAATTACAATTACAATCAGGTAGGATTGAATATGTTAT TGTTACTTTAAAAAAAATGTTATAGTTGCAAATGAGAAAATTAATTAAATGTAAAAGACAATATTTAATTAATTATTAAA TGATTTTTTGTATAGCAGAAGTTGAGCTACGGAAATGGTGGGGGCTACTATGGGCATCAAGTGTACCCGGTGCCAATGTA CTACCAGCACCACCACCACCCAGCTGTGTACCACCACCGAGCCACCGAGACAATGGGTCTACCTGCACACATGTTCCATT TCGCCACCATGGCTCCTGCTACAGCTCAAGTTGGCACGGGTACTGAATGCTTCAAAAGGGTGGTCTAAGTCTGAGTCTGA GTCTGAGAGAAGCTTAATTAATAATATGAGCAGGACCTGGTGGAGTAGAACGTGGTGCTGATTGACTGCACGCAGCTACA TTATTATTATTTGATCTGTCGTGCCATGCCATTGCCAGCAATTCTTTTTTACTTTTTGTAATTTTGTTTCATTTTTAATT AATTCTTTATCTTAGCTAGGTACCTGTTTCGTTTCATTCATCAGATTCTTTCATTCTCTCTCTCTCTCTAACATCCCAGC ATATATGAGCTGTGAACTCTTCAGTACAACAAAAGAACAACAATATGTCCATGTGTATCAATCATGAACCACCACCCATG CCTTATGGCCTTGGTTGTTTTTCCCTCACATCAAATTAACTTTCATTTTCTTTCCTCTTCTATTTATTTATTTATTTATT TATTTGTATCTACATTGTCTCGCTACAACTAGCTTAATTGTTACAGTTTTTATCACAAAATCATTATTTTAAACATTAAG AAGAAACATAATCAAGGAATCGTGTAAAAACCTTTCAATGTGCACTAAAATCAAACT
CDS sequence (LotjaGi1g1v0798400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGATGCTGAGCACCAACAACAATAACAACAAGGTTGGTCAGTTTGGGGACACCACATTGACCAAAGTGTTCGTGGG AGGGCTGGCCTGGGAGACTCCGAAAGAGATACTGAGAGAGCAGTTTGACAAGTTCGGTGAGATCCTTGAAGCCGTCATCA TTTCTGATAAGCTCACTGGCAGATCCAAAGGCTATGGTTTTGTGACATTCAAGGAAGCAGAGGCGGCCAAGAAGGCTTGC GAGGAACCAACTCTGATTATCAATGGTCGCAGAGCCAACTGCAATCTCGCATCGCTCGGTGCACGCCGTCCAAGGTCATC ACCCATCCCTTCCCCCTCCCAAACTCCTCCACCTCCACAGGCACAACTAGCAACCAGGCAGGTTCAGTGGTATTATCCCC CTGCAGTTGCACCGGCTGCTTCCCCATACCATCATCAGCCACTTCCTTTCTACGGGTACCCGCACACTTACATTGCAGCG CCAGGGGACATGAATTACAATTACAATTACAATCAGAAGTTGAGCTACGGAAATGGTGGGGGCTACTATGGGCATCAAGT GTACCCGGTGCCAATGTACTACCAGCACCACCACCACCCAGCTGTGTACCACCACCGAGCCACCGAGACAATGGGTCTAC CTGCACACATGTTCCATTTCGCCACCATGGCTCCTGCTACAGCTCAAGTTGGCACGGGTACTGAATGCTTCAAAAGGGTG GTCTAA
Protein sequence (LotjaGi1g1v0798400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMLSTNNNNNKVGQFGDTTLTKVFVGGLAWETPKEILREQFDKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKAC EEPTLIINGRRANCNLASLGARRPRSSPIPSPSQTPPPPQAQLATRQVQWYYPPAVAPAASPYHHQPLPFYGYPHTYIAA PGDMNYNYNYNQKLSYGNGGGYYGHQVYPVPMYYQHHHHPAVYHHRATETMGLPAHMFHFATMAPATAQVGTGTECFKRV V
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 108 | 105 | 2.5E-23 | ||
| PANTHER | 14 | 201 | 188 | 7.4E-65 | – | |
| PANTHER | 14 | 201 | 188 | 7.4E-65 | – | |
| SUPERFAMILY | 21 | 109 | 89 | 1.88E-24 | ||
| CDD | 22 | 97 | 76 | 5.78505E-39 | – | |
| ProSiteProfiles | 22 | 99 | 78 | 16.432 | ||
| SMART | 23 | 95 | 73 | 9.3E-23 | ||
| Pfam | 24 | 90 | 67 | 5.0E-16 | ||
| MobiDBLite | 100 | 122 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0798400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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