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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0006000 |
| Transcript ID | LotjaGi2g1v0006000.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease Z family protein; TAIR: AT1G74700.1 tRNAse Z1; Swiss-Prot: sp|Q8LGU7|RNZN_ARATH Nuclear ribonuclease Z; TrEMBL-Plants: tr|A0A1J7GWT5|A0A1J7GWT5_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0006000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:2119014..2126883) extracted from Lotus japonicus Gifu genome v1.2.
AGTTAATCCATTTATTAATTAAATTAAATGACTTAAATATATTTTTAGTCTTATAAAATAAAAATAAAGGTCAAATCTAA ATTTATCCGTATAATTTTTTTTTCATTTGAATCAAAAACATGATGACCACATTTATTTTTTGCATTAGTTCTAATCCCTC AATTGTATTTTAATCACTCTCATGTCCTCTTGTCCGTTTCTCCTCTTCATTTTCTTCTAAGCCCAAACAATAACATAACT AGGGAAAAACTATACCCAGTAACAGTGAGTTTATTTTCATAACTTTCCAGGACCCTGCACCTTTTCCTCTATAGCCGACA CCCAACTCTCCTTCATTGTTTCTGCGTCTTTCTTACAGAGTAACTTCTTCTTCTTCTTCTCGACTACCATGCTTATTTGC ATGCCATGTATCTTTTCTTTCTTCCTTTTGAGGTCCCATATGCATATCTTGTTTGAAATACACAGCATACAATTACTTCA TTGGTTTCCGTTGTTTAAGATTTTGTTAAAAGTTAAATGAATTTAGTCCTTTAATTTCTCTGCTTTTGCGTTTTATCATA TGCCCACATACTGTTTGATCATATGCTCAATTAGTTTTGTTAGTAGTATCAATGATTTACAATGAAATATACCCAATGCT TAATTTAATATCCAATCGAAGGAAATTGAACTGCCTCATTTGAATTCCCCTGCATTGCAAATTCTCTGATATCTTTAAAT TCCCCATCCCCTTAGGGCAGTAAACAATGAATAGACTACTAATTGACTTCTTACAACTAACTACTTCAGCTGCATTTTGC TTGTCTAATAGAAACAACTATGTATGTTCGGAACTTTGTTTTGTTTGCTTCCATTAAGGACAAACAATGGACGTTACACA ACCGAACCTCAATATTTGTTAGTAATTTTCCATCTGTCGAAAGTAAGAATACAATGGTTGTGCAAGTTACAAGGTTAAAG GATGGTGCAAACTTTTCATTTACATTTTGTTAATTATTTGCTTTTTTGTATTTCAAATTTAGTCTTAGATTAGACTATTA CTTATTTTCTTACTCTTCTTTTAAGCATTAGTGTAATAATGGTTCTAAGCTCTAACATATGATATATGAGTCTTCTGATT GACATCTTCACTCTTTTCTTCTAATGTTATGGATTGATCTTTGGTTTTAAGCATATGTTTTTCCCCTTCTTTACCATTTC ATTCTATCTTCAGTTACTGATCATGGAGCCTGGAACTGACGAGTCAAATTCAGCCAGAGAAATACGAGGCTCACACTCTT CTTCAAAGAAAGCAAAAGATCTGAACATTGAAGGATACCCTGTTGGGGGTTTGTCCATTGGAGGCCATGAAACATGCGTA ATTTTTCCCACACTTAAAGTAGCCTTCGACATTGGTCGCTGCCCACCTCGTGCTGTTTCCCAAGACTTTCTTTTGATCTC ACATGCCCACATGGATCACATTGTTAGTTTCTTCCATTCTTGCAAATGCCCGGGCAAGATTCAGTTTTTGTAGTTTTGAT TCACATGTATTGTAATATTGTTATATCAGTCATCCTTTGTGCCCCCGTTTCAATTAATACGTTTTATGTGGGCCTTTATC TCATGAAAGTATGGCTGAATTTATTTGTTGTTGACCTCGAGGACATATGTTTACTTTTGACAGGGAGGACTGCCAATGTA TGTTGCCACACGTGGTTTGTACCGTATGAAGCCCCCAACAATTATTGTACCGATTTCAGTAAAAGAGGATGTAGAGAAAC TATTTGAGGTTCACAGGAAAATGGACCAATCAGAGCTTAAACACAACTTGATTGGCTTGGATGTAGGTAATTGTTGGTCT CCATCAAAATGCTGCAATTACATTTAAATGAGTTTTTCCACTCATGTGCACTTTTATTTCATGGCCTACGGCAGGAGAAG AATTTTATTTGCGAAAGGATCTTAAAGTAAAAGCTTTTCGGACTTACCATGTAATACCCAGCCAGGTAATCAGCCCGGAA CATATATTTCTTTCGAGTCTTAAGCTATCGAATATTAGTACAGATTTGCGCCCAGTTTAACAAATGTCACATTTTGAGTT TTTTAAATAGTCTGAAGGCCATTTGAGCAGCACATAGGAAATGGTTTTTGAAACTTTTATGGCTCTCAAAAATTATAAAG GACCTTTGTTTTGTTTTAAATTTTTACATTAGCCTCTCAAAGTTTAAACCTTTATTTATTATACCAAACCTTTAGTTTTG TGATTCAAATATGTAAAGCAGTTTTACATATATTGTCAAATACCTTTTCAATAATGTGCTATTCACCGTATGTTATATCA CATTTTCACTAAACAAAGTTCAAATGACCTTCAGCAGCTTCCTTATCATGACAGCTAAAGCATTCCCACATGAGGCCTTA CTGCTCTGCATGTTTTGGCAGGGTTATATACTTTACTCTGTAAGACAGAAACTTAAACCAGAATATATCGGTCTTTCTGG AAACGAAATTAAGAATTTGAAGTCATCTGGTGTGGAGGTCAGTCTTAACTAATGTATTATCAACTATTTGACCAATACGC AGCTGGTATGTGTTCACTAGTTTTAGCATTTGTTGGGAGCTTTCCATTTAGTTTAGGGTGGGTTGATTTTAATTTTTAAC TTTTAGTTTTCTGATCAACTAATCTTAAAAATTCAAATTCAAATCAAATTTAGCTAACAAAATTTCCTTTTATATTATTT TTAATAGCCTATCCCATCCTAGAAATTTAAATTCAGATAAAGAAAAGTTTTTAATATTTTATCATTTAATAGATATTTCT TTGCAATTTTAGTTTTTGTTTCTAGTGCTAAAACAATAGAAAACTAAGGAATGCAAATTCAAGAGTAGAGAGAGAATGAG GCTAGATTGTGGGTTCCAAATTTAACAATTTTACTAACACTCAAAATTCAAGGCACACAAGTGGAAGAACAAACATCATA TGGAGCATAAAAGAAATAAGAATCTGTTCGATCAAGCAGCACTTGCTTGATCAATCACCAGAATCTTGGTGATTCTCTCT CTCTCTCTCTCTATCTATCTCTCTCTCTCTCTCTCTCTTACACTCACTGTATCCTAGAGAGAACTCAGAGAATAGGGAAA CAGATTCATTCTCACAACAGCATGACTTAAACATAGTCAGAAACAAAACCCCAACTGACTGCTAACTGAATACAACCAAC ACTAACTAACTAACTATAGAAAGCTAGATACTGAATTAACACTCAACAAAATCACATATAAGTATGAACGTACCTTTGAT GTAAATTATCACAATGAAAGCCTTTGCCTATTTACTTTATCCTCTTCGTTATTATTTCTTAATTTTTTGATTTTATGCTC CAATCCTCTTTAAAACTACTTTGGTTTCCCCTCTTTCATTGAGAATAGTCTCCCTTTTTATATCAATTGAGCCTCCAATT ATTCCTTATTTTCTCAGTCGCCAACTTATATTTAAGTAGTTCAAATCTTTACATAAGCTAGTTTGTATATTTATACAATA ATAATTATTTATGAATATTTTAAAAAATTAATATAATAATAAGAGAATAAATAAAAATATTGTTTTATTTATATTTAAGT GTAATACGCTTTTTAAATTGCCTAAGGTTTGACATTTTTCTCTAAATAGCCTGTTAATAAAGTCTTCAACCAATTTATTT GGTAAACATGCTGGCCTGAGCAATGTAGACTGTTAAACCATAGGTGTCCATTGAGGACCCCCTACTTGCTGTACACAAGC AAATGAAGTTATGAAGTTTATTCTGCTGACTATTTCTTCTTCTAATATGCTAAAAAAATTAAAATTGAGCTTTTTGTACA ATCGTAATTATTTAATTAATTATTGTTCTTAAGAAATTTTGTTTCGGATTAGTTCTTCTATATCTTTAATTTTTGTTAAA CTGCTCAACACTGTTTTGTTGGCAGATAACATACACTTTGACAGAACCAGAGATTGCTTTCACTGGAGACACCACGTCAG AATTCATAGTTGATGAAAAGAACACTGATGCCTTGCGGGCTAAAGTTCTTGTATTGGAGGTGAACTACTTTGTCCAATTC TTTTGAAGACATGAATTATTCATAACCAACTTATGTGCTTAGCTAGTCTATATTTAAATAATCCTTCCTCACACAAAAAA TACGTCTTCTATTTACGTTAAATGTTCATTTTAAATATCCACATCAATGATATATAGGCACATTCTGCTCTGGATCTAGT ACATCTTGGTATAATAGAGCACTTTCGAGTTCAAGATATCAATTCATGGTTCCTAGATAATTGTTTTTCATTTCTTTTTT TTTTGTTTAGTTATTCTGATTTCGGGGAATAACTATGTTCACCATTATATACAGGAAATCCCCTCATTTAGTTATCTATA GGATTGCAGTATTGAACCCTCAATGAACTGATTTCTAGTTTTTCCTTGTTTTTGATTTATATTGATGGTTGGTGTTGTCT TTACAAACAATTTTTTTCCTGCTTTGAATCTAGTGCACATTTGTTAACAATTCAATTACCGTGGAACATGCCAAAGATTA TGGACACACTCACCTTTCTGAGGTAAGCTACCTGCTTCAATAAAAAGTATACGAAGTTCAAAGTAATCTCAGTGGTTTTT TCATTTTATTCCTATCTACTTGTTTATTTTTTCTATTTCCAATTGATGTTCTCCAGATTATAAGTTATGCTGATAGGTTG CAGAACAGAGCAATCCTTTTGATTCACTTTTCTGCGCGTTACACAGTAGAGGTATGACATTAATTTGACTCCCGAAAATG ATACATCTCCCTCCCAAAACCTTGGTCTTTGTGTGTGGGATCCTGGAGAAGATTGACATAGCTTCCCATCTTTACTCATG GGAAGTTCCCTTCTGTTTGATACAGATAACCAGCCTTCCATGTTTTAAATAAATACAAAATTAAACCATTGTTTGATGCT TGCTGAGTTGTTATTAGCTTCTAGAATATCATTTTTCTGTAGTGATTTTTTTTCATCAGGATACTATACACTGGTTGTAC TTACTTTCAGGAAATTCAACAAGCTGTGTGTGCATTACCACCCCCTTTAGCTGGTCGAACTTTTGCACTTACTGAAGGTT TCTGACAAGTAGTTTCTGTTGAATGCATAGAAGAGTTCTGTTGAATGCAGAATTGAATGGAGTTATTTTTACCCCCTCCA TCCCCACCTACAGCTCTTGGCAGCAGGTAGAGTTTACCATCATTATGAGTACTTGTGTAATGATTCATTCATACTTTCTC TCCCATCTCATATCCACACATTTTACGTTCCTCTGCATTTTCTGTCACATCACATATCGTATCACTCATTTCTTTCTTTC CTCTTCCTATTTATCTAAGATGGAGGAGGTGGAAAAGAAATGTGAACAAAACATCATTCCATCGTAATTCTTGGAAAATT TTGAAACTGTGGAATGCATGGTCAAATCGAGTGTATCAATATAGTCATCAACTAAGTACCTTTGATCAGTCTGTCTGTAT TAATTTTAGTTTTATGTTTCATTTCATTTATTTAGAGAAAAATGCTGATGGACTTACTTACCTTTATTCACTGAGTATGG ATCCTTGTGCACTCTCTAACACCATGTACTCCTTGCATGGCATTCAGATAAAGAAAATGAAAAAAGCTGCTTGGCTTATC TTCATTGACTGAGTAATTAGAATTGCGTGTTTACCTCTCTCTGAACCTATTAAATATGTGGAGCTGTCAAAATATTTATA AATAAAGAGATAGACATAAAATTTTACACAGTAATAGGAAGTAATAATAGGAAGTATCGTGTCACGTACGTGAGAGGATC TTAATCCCACCAGGCACTCCTTGCATACTTTTCAGGAAAGCCGGGAAAATACATAAACTTATACTAGTGTAAATTTCTTC ATGTGATCCGGTAGATCATCCACAACATTTTGCAAACAAATATGGTTATTATTTTAGCTCTTTTACCAATTAAACTTTAC TTTTCCTTTTATCACTTTACATGCACCCCCTTGACAATATTTCAGTTCTTATAAATAAGTTACAATTCATATAGATAACC GGTAAATACCTCCTTCAATCTTGTGGTAAATTTTTAATTAAAAATTATAGGTGAAACATTCATCCATTATTCCCTTTTAT CAAAAAAAAATTGAAGTTAAAAATTAAACTTGAATTTTAAGAGCAAATCATAGAAAACGAATGTGGCATTCATTTATCTA TATTTTACGAAATGCAGACAACATAGATGGTATGAATTCCAGCGAGAAGCTATACAAGTGCGTTTTATCTATATTTTACG ACATCCACTTATCTATATTTTGTTAAACTGTTAAGTGTGTTTGAAAAAAATGTTGAGTGCAGTTTTAGTAAAACTGTAAA AAAAATCCCTACTAAAAATGTGGAGGTAAATTATATTAGTAAAATGAGTATATAACCTTTTTGACTAAACAAATATAAAG TCAATAAAAAATATATTTTGTTAAAATGATTGTATGAGTGGTTTGTGCCTCTCTACATTTGGGGAGTCTGCAAGGGTTTC GCCCTCCACCCAACCCCATCATGCGCTGATGATGCCATTGCCGCCGAACAGCCCGGTCCTACTGCTGTATCGATATGGCC CGCTCCCACAGCAATGAAGGTGCCGCCAATCAGGATAGAGGCTTCCATCTTGGTGACAAAGAGGCTCTCATCCGACGACG ATGGCGAAGCTGCCATCTCCTCCAATCACGGTGGCGCAAGGTTGTAGCATCCATTTGCAACGATGTGGGAGACTCTTCCC AACTGGGCAGTGACGCTACTCGTAAGGCTGGAGTTTATTCTCCCACGGCTTCAACCTTAACTAGGGTCCAGATGCTGCCA TCGCTGCCATAAAATCCATCATCGTGTGTGTCGTCCTGTTCACGTGCGACGTTTCACTTGTTCTTGCTTTTGTTCCCGTG GCTTTGTCACTGTATTTTGCTCCTGTTCGTGATGTTCCTGTGGCTTTGTTTCAGTTCACGACGTTGTGTGTCTGCTCCCT CATGGTGTTTAAATGTCCATTTGGGTTTCGATCTACGCGAACTTGCAACGCTTCATCTGACCTCTTTGTCGTTCAGATGC GCCTTGGGTTGCCTCTTTTGATTTTCTTTGTTTCTTATTCCTCAATTCATTTCTTAATTGCTTTTATGTTTAAACTGAGA TTGTATTTTTTATTGGTTAACCTATTACGACATAAGATGAGGGGAAGGATAGAGATGTTTTCTTAGAATACCGAGTGGGG TTCTGAGTAGCAAAGTTAAGTTCTTCTCTCTGTTCTTCATCAATGAATGCCATCCTTTAGTGGATGGGGATCGTGTTGCT AAGTTGCAATTAAGGTTCTCTTTTGGTTGAAAGGAATTAAGGTTATTTTTTGGCTGAAAGTCCTGATTGTGTTGTGTATC ATTTGGCGTGCTTTTTGTCGAGGTTTTGTCATGAAGATGCATGGTTTGGGATCTATGGTGTTGTTTCGTCCATTGTTTTT TGAGTTGTAATGGCAATGACTTTGCTCTGATCTCGTTCTTTGATAATCTCGTCCAACCGAATCAGAGCTTGCACGTGATC CTCCTGCAAGAGTTAGCCATGATGTGTTGTTGTCGTCCCTAGAACTTTGACATGAAACTATGCCCTGATCTCGTTGTTTG GTATGCTCGTTCGACCGGATCAGAGCGTGCGTGTGGGCCTCTGATGGCTGAGGTGGTTTCATTTTGCGGTTTTTGTGTTT TTGTGTATGTTGTTGGTTTTGCGTTTGTTGTTTTTATTATGTTGCTTTCGTTTGCTTTGTGTTGTATTAAATCCATTGTC GAGAGAATCTATATCTCGACTCCTTACACA
CDS sequence (LotjaGi2g1v0006000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCTGGAACTGACGAGTCAAATTCAGCCAGAGAAATACGAGGCTCACACTCTTCTTCAAAGAAAGCAAAAGATCT GAACATTGAAGGATACCCTGTTGGGGGTTTGTCCATTGGAGGCCATGAAACATGCGTAATTTTTCCCACACTTAAAGTAG CCTTCGACATTGGTCGCTGCCCACCTCGTGCTGTTTCCCAAGACTTTCTTTTGATCTCACATGCCCACATGGATCACATT GGAGGACTGCCAATGTATGTTGCCACACGTGGTTTGTACCGTATGAAGCCCCCAACAATTATTGTACCGATTTCAGTAAA AGAGGATGTAGAGAAACTATTTGAGGTTCACAGGAAAATGGACCAATCAGAGCTTAAACACAACTTGATTGGCTTGGATG TAGGAGAAGAATTTTATTTGCGAAAGGATCTTAAAGTAAAAGCTTTTCGGACTTACCATGTAATACCCAGCCAGGGTTAT ATACTTTACTCTGTAAGACAGAAACTTAAACCAGAATATATCGGTCTTTCTGGAAACGAAATTAAGAATTTGAAGTCATC TGGTGTGGAGATAACATACACTTTGACAGAACCAGAGATTGCTTTCACTGGAGACACCACGTCAGAATTCATAGTTGATG AAAAGAACACTGATGCCTTGCGGGCTAAAGTTCTTGTATTGGAGTGCACATTTGTTAACAATTCAATTACCGTGGAACAT GCCAAAGATTATGGACACACTCACCTTTCTGAGATTATAAGTTATGCTGATAGGTTGCAGAACAGAGCAATCCTTTTGAT TCACTTTTCTGCGCGTTACACAGTAGAGGAAATTCAACAAGCTGTGTGTGCATTACCACCCCCTTTAGCTGGTCGAACTT TTGCACTTACTGAAGGTTTCTGA
Protein sequence (LotjaGi2g1v0006000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPGTDESNSAREIRGSHSSSKKAKDLNIEGYPVGGLSIGGHETCVIFPTLKVAFDIGRCPPRAVSQDFLLISHAHMDHI GGLPMYVATRGLYRMKPPTIIVPISVKEDVEKLFEVHRKMDQSELKHNLIGLDVGEEFYLRKDLKVKAFRTYHVIPSQGY ILYSVRQKLKPEYIGLSGNEIKNLKSSGVEITYTLTEPEIAFTGDTTSEFIVDEKNTDALRAKVLVLECTFVNNSITVEH AKDYGHTHLSEIISYADRLQNRAILLIHFSARYTVEEIQQAVCALPPPLAGRTFALTEGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 12 | 300 | 289 | 3.0E-139 | – | |
| CDD | 27 | 229 | 203 | 3.66722E-36 | – | |
| Gene3D | 34 | 286 | 253 | 2.3E-46 | ||
| SUPERFAMILY | 44 | 278 | 235 | 1.57E-35 | ||
| Pfam | 66 | 269 | 204 | 9.7E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0006000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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