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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0012500 |
| Transcript ID | LotjaGi2g1v0012500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|K7L204|K7L204_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0012500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:4402065..4407153) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAATCTGGATAAAAGTTTGAACAGAGATAAAAGGCAGGTAATAATAATAAAGCAAGAGAGGAGAAAAAACAAAAAAG TAAATTGGTGTGTGTACAGTGTATATGTGTTGGTTTATCTGCATGACACCAAATCAGTGAAGAAAAAGACTCGTAACATT TCTACCTGAAATTTCTCACTTAAAACAAGGCAACTTGAGTGCAAATTCATATCATGTAGTCATGGTGAGTTGATTTTCTC TTTCTTCATTTCAACTCTCTCTGTTTCAGTTTCCAGGTTCTACCTAGTCCCCATTTATCTATAGAAGCCTAGAATTTTCT TTGCTTTTGTGTTTTGGAATTGGGGATCTAAATTGCAAGTGGTTTTCCAGAATTTTGATTGAGGTGTCAGGTAGAAAACA GCACTCATCACTCACAGCCAAAGCAGAAGATTTGGCAACCAGAGATGGAAGCACCTTTTTCTGAAGCATCGTTCCATGGA ATCACAGAAGAGGATCAGAAAAATCAGAATAACCAACAGCATTATTCTTCAACACCATCTTCATCAAGAACTCCACCTGC ACCACACAAGAAAAGGAGAAACCAACCTGGAACACCATGTAAGTATCTTAAATTTTTTATAAAAGTTAAAGACCTAGTAA TATTTTTTAATTTTTGGTTTCCTGTCTATTTTTGTTTTATCAGGCCATGCACCTTAATATTATTTTTATTTACCATTGAT ATGATACCCCATCTGGGCTGGGAAACCCTAATTCTGAAACATGTACATGTGAAATGAATAAAAATTAAGTGGGCATGTCC TGGAAATCTCTGTCTTTACCCTTTCTTAATTTCGTTGATTTTTGTGATAGTTTTAGTGAATTTTGTAATAATTTTTTGTT TGGCTTTTTTCTTTCAATGAACACAACAGATCCAGATGCTGAGGTGATAGCACTATCTCCCAAGACACTAATGGCAACAA ACAGGTTTATATGTGAGGTGTGCAACAAAGGATTCCAAAGAGAGCAAAATTTGCAGCTCCACAGAAGAGGACACAACTTG CCTTGGAAGCTAAAGCAGAAGAATTCAAAAGATCAGGCAAACAGAAAGGTTTATCTGTGTCCTGAACCCACTTGTGTACA CCATGACCCTTCAAGGGCTCTGGGAGATCTCACTGGGATTAAGAAGCACTTCTCTCGGAAGCATGGTGAGAAGAAGTGGA AGTGTGAAAAGTGCCCTAAGAAGTATGCTGTTCAATCAGATTGGAAAGCACATTCCAAGACTTGTGGCACAAAAGAGTAT AGATGTGACTGTGGCACTCTCTTCTCCAGGTAACAACCTATACCCACCAATTAACCACTTGCCATTTTCCAATAAATAGT TCTATTATTACCTGCATTTATGTTTGGAGCATGAGATCTAGAAGCTATGGTGAATAGTGCTGAGTTTTAAATTGCGGTCT GAAACTGCAATTGCAGACGCAGTGCAAACACGTTTTTTCAAGTACCTGTAAAAGCATTGTGACCACAATTGCGACTCTAT CAACCCACATTTATTTGTAATTCCGCCACATAACCGCAACCGCTATTTAGAACCCTAAAACACTATTTAATAATTTTTTA CAAGATTATGGGATCCATTTGTGTGAATGGCCAAGATTTTAACTGGCAGTAAAATTAATGTTTTAGGGGTTTTTCTAATT TGATGATTATAAGAACAATTAGTTGCAGTTTCATTAGCTTACATGTATATTTGTTTTCTTCCTTGTTGGAAACATGTGTT TGGGAAGTGTCGTGTTCCTTTTCATGATAATAACACCATAACCTAACAAACCCCTACTTCTTTTTCCCTCTATTTCGATT TTGTACTACTTTCTTCTTCTTCCACATTATTTCAAGTTAACTTGGATAGTGGTCAGGCTGTGTTCAGACATGCCGACAAT TTGAGTTCGTGACACACAAGCGGATAGATTCTGTTCACAAGTTTGATGGCTTTCTGGATTTGTATGCATGAATTCAACAA GTACCTACGAAAGAAACTGAATATATAAAAGATATAAATAAGACACATGGTCTTAAATTACAGTTACAAAAACAGTAAAT ATCGCATTAGAAAATTAGAGATAAATGAAGGTTGATGCGGCCGAAATTAGGGTGGTAATGTTGTCATGGAAACTCCAAAT AAAATTCGTGGTCACAAATGAGGTTGTGGACCGTAATTTAAAATCTTTTAAAAATATAATATTTATTCTTTTTTGAAACT AAATATAATATCTTTTCTAAATATTAACTAACATATACATTGTTTATATCATACATCCTTCAGCTTCAACAAATCCAATG CTTGAAATGAACATGTTCTTCAATTTCAATTATTGAAACCCAATTTCTTGAAATTCATATCTTAATTGATTAGCTTGTCA TTTTTTCATGTTTTGGTTAATTATTCCTCCAAGTATTTTACCTTGTTTGGCTTTTTATGGAATTTTAGGTTATCATGCAT CTTATTCACTTGTAGACTTGTAGTCTCTATTCATTCCCGCAAATATTTGTCTTCGGGTTCATTATGATTTTATATCTTTT ATGTTAAGGTTTTCTTTACAAGATACATATATTGTCTTTTACTTTGGAATGCAAAAGTCCTACTTCTAGCATTCTATATA TAACTGAAAATTAAGTTCAAAAATATATATAATTGAAAATTAATACTTGTACAATAGAATAGTACAAGTTTTTTAAGGTG AAAGATAAAAAGGAAATGTGAGATGTACGTGATAGTTGTCATGAGCTAGTGAGATGGAGAGTAAAAACAATATTATACAA AAGTTTTGTAACATAATGTTTTATGAATAAATGCTTATTTAGCTTAAGGAATTTGTGACAACATTAGTAGCCAATATACG CTTTGTAAACCGTGGACCTACAATTACAAGTTAAAAAAATTTATAAATTAATTTTAGCAAATAACATACTGTAGGTTTAT GAGGCTTTAACATAAAACACCGTAAAATTGCAGGTCCGCCTAATGTGATCCGTAAAAAAATACCAATTTTGGACCATTTA TTATAACTTGTCCTGGCTATAGTTACAACACTACTGCCTCACCCCATTAGCTCTCTCCTCCCCTCGACACCTCCCCTCCA ACACCTTGGTCCCTTTCTTTTGCGAAGAAGGGTGGGGGAGAAAATGTGGGGAGGTGGTGTAGCAAATTAGGAGGGAAGGA GGAGGTGCAAGAGGGAAGAGAGGTTGGTGATCGTGCGTAGAATGTCATAAAAAAGAGTCTAAAGAGGTTTAAAATAAGAT TTTTTTTTTTTCGTGACCATATTAGATAAACCCACAATTGTAAAGAATTTGTATTATTATTTACTGAGCAGTTCAATGGT GAACTAAGTTAAAAATTGGTCCACCCATAAACAATGTTCTTATAACTAATATTAATTGCTTATAAAAAATAATAACTAAC GTACAGGTTAATATGTGCTAAAAGAATTTTTTTTTTTTAATTTGTAAACCATGTTTTTCTCGATATACAATACACAAAGT TAATGTTTTTGTATCGTATTTATGTAATTTTAAAAGTGAAATGTCATAATTAGAGCAACTGAAATCAGAAGGACGAAAAT CACACATTTATAAAGCTACCTAGAGCAAAAGTGCATCCTTTAATTTCATGAAATTCTTTTTTGAGAGAGTATACCTGAGT ACATCTATGTAATTGGTTCTCTGGGAATATTACTGCAGAAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCACC GGCTCAAGAGAATAATACATCACAACCACCCAACAACATGAGCAGTGCAATCAGCAGCCAACTCTATGGAAGTAGCAGCA ACAACAACCACATGTCCTTAGCCTTATCTCAAATGTGTCCACAGATCCATCACCAAACCAACAACAACAACCAATCCGCC AGTGACCTGTTGCATTTTGGTGGAGCAAATATTGCAAAGACTGAAGAATCCAACCACAATTTTCCATCAACACCATCCCT TGGCTTTTCATTTAAACCTTCACTCTATCAAACCCCTTCTTCAATGTTCTTCATGCCACCAGAATCAAACCAAAACCAAA ATTACCATCATTTTGGTGGGACTGATTCCAAGCCATTCCAGGGGCTAATACAATTGTCTGAACTTCACAACAACAATAGC TCCTTCTCTGAACATTTCAACATTTACAATATTGAAGGGTCCAGCTTCTTCTCTGAAGGGACATGTTCTGTAATGGGTGA TCATCATCAACATCACCAATTCCAAACAAGCTCCACCACAGTCCCTTCTCTCTTCAGCAGCACTTTTCTCCACAGCAGCA ACATCACTCCTCACCTGTCAGCAACAGCAATGCTTCAGAAAGCTGCTCAAATGGCTGCAAGTTCCAGCAACAACACTTCC TCAAGTTCTGATCACAAGCCAAACTATGGAAACATGCAGGACCAGATGATGAACTCTTCCATTTTTGGAGCATCTGATGA TCATGATTATGGCTTGAAGGAAGAAGAACCGAAACACCTGCAGAAGATGATGAGTGCTGGAGGCTCTGAGAGGCTCAGTA CTAGGGACTTTTTAGGAGTTGGTCAGGATCATGTAGTGAGAAGCTTGAGTGAAGGAGTTTCAGAGGAAGATCCACAACAA CAGCAGCAACATGGCTTCTTCAACTTGAGCTCTTTGGAAGCAGAGAGAAATGGAAGCAGAGCAACAGGTCAGTGTTTCGG AGATGGAGGGAACTTTCAGTGAGGGAATCTTGCTAAGCATGGGCATGCAGCAAAAGAATGAACAAAATGGTAGCTAAACA AGATTTGAACTTCAAAATTATTGGTCCAGTTTTTATTATTATACATTATATGTATGATGGAGTCATGTTTTTATTGGTAA ACTCTTGATGTTTTTATTGGTAAACCCTTGATTCTGTGCCAGCAGCATTTTCAGAAAAAAGAAAGGGGTTGTGTGTGTGT GTTTTATGATGATGATGACTTGTTGTCTTGCATGCGGTGAACAGCAATGTGGTGTAGAATTTTGTTCCTTATGTTGGTAT GTTTTATTTTGGATATGTAATATAAAGTGAGTATCAATTTTTTTCTCCA
CDS sequence (LotjaGi2g1v0012500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCACCTTTTTCTGAAGCATCGTTCCATGGAATCACAGAAGAGGATCAGAAAAATCAGAATAACCAACAGCATTA TTCTTCAACACCATCTTCATCAAGAACTCCACCTGCACCACACAAGAAAAGGAGAAACCAACCTGGAACACCATATCCAG ATGCTGAGGTGATAGCACTATCTCCCAAGACACTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGATTC CAAAGAGAGCAAAATTTGCAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTAAAGCAGAAGAATTCAAAAGATCA GGCAAACAGAAAGGTTTATCTGTGTCCTGAACCCACTTGTGTACACCATGACCCTTCAAGGGCTCTGGGAGATCTCACTG GGATTAAGAAGCACTTCTCTCGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCCCTAAGAAGTATGCTGTTCAA TCAGATTGGAAAGCACATTCCAAGACTTGTGGCACAAAAGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGA CAGTTTCATCACCCACAGGGCCTTCTGTGATGCACCGGCTCAAGAGAATAATACATCACAACCACCCAACAACATGAGCA GTGCAATCAGCAGCCAACTCTATGGAAGTAGCAGCAACAACAACCACATGTCCTTAGCCTTATCTCAAATGTGTCCACAG ATCCATCACCAAACCAACAACAACAACCAATCCGCCAGTGACCTGTTGCATTTTGGTGGAGCAAATATTGCAAAGACTGA AGAATCCAACCACAATTTTCCATCAACACCATCCCTTGGCTTTTCATTTAAACCTTCACTCTATCAAACCCCTTCTTCAA TGTTCTTCATGCCACCAGAATCAAACCAAAACCAAAATTACCATCATTTTGGTGGGACTGATTCCAAGCCATTCCAGGGG CTAATACAATTGTCTGAACTTCACAACAACAATAGCTCCTTCTCTGAACATTTCAACATTTACAATATTGAAGGGTCCAG CTTCTTCTCTGAAGGGACATGTTCTGTAATGGGTGATCATCATCAACATCACCAATTCCAAACAAGCTCCACCACAGTCC CTTCTCTCTTCAGCAGCACTTTTCTCCACAGCAGCAACATCACTCCTCACCTGTCAGCAACAGCAATGCTTCAGAAAGCT GCTCAAATGGCTGCAAGTTCCAGCAACAACACTTCCTCAAGTTCTGATCACAAGCCAAACTATGGAAACATGCAGGACCA GATGATGAACTCTTCCATTTTTGGAGCATCTGATGATCATGATTATGGCTTGAAGGAAGAAGAACCGAAACACCTGCAGA AGATGATGAGTGCTGGAGGCTCTGAGAGGCTCAGTACTAGGGACTTTTTAGGAGTTGGTCAGGATCATGTAGTGAGAAGC TTGAGTGAAGGAGTTTCAGAGGAAGATCCACAACAACAGCAGCAACATGGCTTCTTCAACTTGAGCTCTTTGGAAGCAGA GAGAAATGGAAGCAGAGCAACAGGTCAGTGTTTCGGAGATGGAGGGAACTTTCAGTGA
Protein sequence (LotjaGi2g1v0012500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAPFSEASFHGITEEDQKNQNNQQHYSSTPSSSRTPPAPHKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGF QREQNLQLHRRGHNLPWKLKQKNSKDQANRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCPKKYAVQ SDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDAPAQENNTSQPPNNMSSAISSQLYGSSSNNNHMSLALSQMCPQ IHHQTNNNNQSASDLLHFGGANIAKTEESNHNFPSTPSLGFSFKPSLYQTPSSMFFMPPESNQNQNYHHFGGTDSKPFQG LIQLSELHNNNSSFSEHFNIYNIEGSSFFSEGTCSVMGDHHQHHQFQTSSTTVPSLFSSTFLHSSNITPHLSATAMLQKA AQMAASSSNNTSSSSDHKPNYGNMQDQMMNSSIFGASDDHDYGLKEEEPKHLQKMMSAGGSERLSTRDFLGVGQDHVVRS LSEGVSEEDPQQQQQHGFFNLSSLEAERNGSRATGQCFGDGGNFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 498 | 498 | 1.3E-185 | – | |
| MobiDBLite | 1 | 54 | 54 | - | – | |
| PANTHER | 1 | 498 | 498 | 1.3E-185 | – | |
| MobiDBLite | 15 | 37 | 23 | - | – | |
| Gene3D | 67 | 94 | 28 | 3.2E-5 | – | |
| SUPERFAMILY | 70 | 168 | 99 | 1.47E-7 | ||
| Pfam | 71 | 93 | 23 | 2.7E-5 | ||
| SMART | 71 | 93 | 23 | 0.0052 | ||
| ProSiteProfiles | 71 | 93 | 23 | 10.99 | ||
| ProSitePatterns | 73 | 93 | 21 | - | ||
| Gene3D | 106 | 196 | 91 | 4.9E-7 | – | |
| SMART | 113 | 143 | 31 | 160.0 | ||
| SMART | 148 | 168 | 21 | 130.0 | ||
| MobiDBLite | 200 | 220 | 21 | - | – | |
| MobiDBLite | 402 | 427 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0012500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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