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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0017600 |
| Transcript ID | LotjaGi2g1v0017600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT3G19850.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LT24|Y3985_ARATH BTB/POZ domain-containing protein At3g19850; TrEMBL-Plants: tr|I1L768|I1L768_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0017600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:6005995..6009452) extracted from Lotus japonicus Gifu genome v1.2.
GTAATTTATGCTGAAACCTTGCTCATGATTTAATTGGAAAAGAGAGTTGACATGAAACACCCTTTTCCATGTAAAAACAA TGAAGTACATCTTGTCAAGGATAGGGCAAGAGGTTTTTATTCCTTGCCATGCTGGATATGTCCTTTCTGCATATATATAA TCATTTCCATTTTTGCCAGAGGCTGCTCCATCAAAGCACAATTTCATCTATTTTTATTCAATGCAGAAGAAGCAGCAATG TCAAAGCTCTGTGACTTGCAAATCCACATTAATGACGAGGAAACATTCCTTTTGAATGAGGTATGAAAGGAATTCAGACG TTTTATTTGTTTATTTGTTCTCTAATTTTTTAGAACCAAAGAAAAATTATGAAGTTCCAATATATCAGGTGAATCAAGTT CATTTATTTTTTTTGCAGAAATTAATATCAAAATACTGTGGAAGAGTGAAGATATTGTTGAATCAAGAAAAGAGAAGATG TCATATCAAGAAGATGAGTATTGAAATCAATGATTTCCCTGGAGGGCCAGATGGGTTTGAGCTGGTTCTGAGATTCTGTT ACAACAATGGCAAAATCCTCATAACTACATCCAATGTGCTTATCCTCCATTGTTGTGCCCTCTATCTTGAAATGACTGAG AAGGTGTTTATTAACAATCTCTTGAAACAAGCAGAAACATTTCTTGAGGGAATCAATTATTGGACATGGAATGAAACACT TGTAAGCCTTAAGAGTTGTGAGCTATTTTATACATATTTGGAAAGGTGTGGTTTCCTGGAGAGTATCATTTGTGCAATTT CAGCAAAGATGGCTCAAAATTCTGATGTAAACCTCCTCACTTCCTCATCTTCCTCTCCCCAATCTTCACCTGAAAGCAAT TGTGCAAAGAGATTAATTTCTTCAACCCAACTTACTCCCAAGATGATCAAGTCAAGTTTTCCAAGCAAAGCATGGTGGTT TGATGATTTTGCTACTTTACCCCCAAAGATCATTGAGAAGTTTGTTAAGTGTAATGGGGCCTACCTTACAGATAACAAAA ATTTGCTTCTCACAAGGTTTCTGCTTCATTATCTGAAAACAGTTACTCCAAAAAGAGAGGTTAGTGAGTATACTGGTCTT GCAGAAACAGCTGCTTATGGGGTCATATTTGTTAGCAATAAGATTAAGCCTTTCTCTTGCAGAGGAATTTTTTGGGTATT GAGGATTGTATCAAGGTTTGGGATAAGTGAAGAGTGCAGAATGGAAATGGAGAAATTGATTGGTGGGATTCTTGAGCAAG CAACTTTGGATGATGTTCTGGTTTCTGGGCATCATATGGGACTTTACTATGATGTAACTTTTGTGATAAGATTGATTGAA GTGTTTGTTGATATAAATGGCTCTAATGTGCAGAAACTGAAAAAGGTTGGTCGACTAATTGACAAGTATTTGACCGAGAT ATCCCCTGATCAGAACCTCAAGATATCTACATTCCTAGGAGCTGCAGAAAGTTTGCCTGATTCTGCCAGGGATTGCTTTG ATGGGGTCTACAGAGCCATTGACATCTATCTTGAGGTGAATACCATAAACTCTTTTCTAATTGCCAGTTATGATGCATAC AGCACTGATAGTACATAAACCCCTTAAACACTATGTTTTTCTCTTTATCTATTATTTCTCTTATATCAAATCATATCATA AATCACATTTATTATATCTCTTTTCGCTTCATTTCTCACTCTTTAAGTCTACACCCCTTAGTAGTCTACCAAACATTTTC CTTCCATGATTGCTCTTATGCATTATAAATTATCATATTCCTCAAGAATCTTGTTTCAAAAAAATTCATGCTAAAGAATC ATGAGAAATTGTAACAAGCTATCTTAGCTCAATCCTAGAAAAGGAAAACGGCTGGAGCAAAAATTGAATGAAAAATCCTA TATTTCCCAATTTGGTTTAACATTCCTCTTCCCCGAATCTGGATCTTCTCCAACAAATTGTTTTTGTCCATACCCTCCTG CAGCAATCTTGACCCTCAGATGCATCTTATGGTTCAAAAAATTAACTACAATAGAAAACTCAAAATAATTGAACATTAAA TGATAACCCTTTGATGCATCTAACGGTGCAAAAAAAAACCATATTCACGTTTCCTTCTCCCTAGCATTCGTGAGCGCATC TTTCTCCATGACTCCTTTGCTTTTCATTTTTGTTCTTGTGCCTCGTGCAAGTATCAGTTCCAATTCAATTGACACAATTT GCCTAAATTTACCAATTCCAATTCGTACTAGAGGGGATCTGGATTCTCCCTCTTCCCCCTCTATTGTTGACAGATGTCAA ACAAAATTAAATTATTCATTCCCTCCCGAATGTTATCATCTCATAATTCATAGATAAGTGATTATTTTCTTCCTCTTGTA ACCAAAAAAAGATAAGTGATTACTTAGTGTAACAAATGTCATGTCATTACAGATAAATGGTGAATTCTAAAATTTGCATT TTCATAATTAAGAACGACAACATAACCCTCTGAAAAAAAAATATCTTATATTTTTATTGGGATCTCTATCAATGTCATAT GTAAACAAACATAAAACAAAACAAAAAATAGAGATAAGGTCAAGTGCCCTGTCCAAATAGTAAGGGAACATTGCCAATTG TCTGTGTTGTATTGTAAAAATCCAAATGATAAGGTTTTGTTGCTCTTTTTATACTACCATATTTGGCTTTCAAGATTATA CAAGAGTCCCTCAATTTCACAACTGATGAATTGCAGTCTCGTCCAGTGATCTCATTTGAAGAGGGGTCAAAGTTGTGCAT ATGTCTTAATTACAATAAACTCAGCTTTGAAGCTTGCAAGGATCTAGCCAAGAACCCCAGAATACCTCCAAGGATTGCAA TGCAGGCTCTTATTTGCCAACAAAAGAATATTCCACTTTGTGACTTTGGAATTGAAGGAAGTGAAATCATGAGCCCTTCC CAAATCATTTTGTATGATGAAGACAACACAGACAGTTTCTTGGAAGAGAAAGAAGATATAAAACTAAATCTGGAGAGAAT GCAATGGAGAGTGAGCGAATTGGAGAAATTGTGCACCGAAATGAAGGTTCAGATGTTAAGGTTCACTCGCCAAAATGTAT AGATCCTGATTTAGCAGTCTAATCAATATCAAAAGATACATTGATATTTCTTTGTATTGTAAAAATGTGTAATTTTATTT TAGGCTTAAGTGCGATCTAGATCTCTGATCTAACACGATTATGTAGAAGTAGTCTTTAAATCGTGTGGTTAACAAGCACG GTGGAGGTGGCGGTGGCACACGATGGTGATTGGAGCAGCAACGATGCCACACGGTAGGTGAACATATGTTGACAATGGTG GCCAAGAACAGAACAATGGTCACTAGGGTTCCACTTGGAGCCATGACCAAGAACGAAGGTCGTAATAAGAACAGCTAGGG TTTTGAGCACCGAAGTAG
CDS sequence (LotjaGi2g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACACCCTTTTCCATGTAAAAACAATGAAGTACATCTTGTCAAGGATAGGGCAAGAGGTTTTTATTCCTTGCCATG CTGGATATGTCCTTTCTGCATATATATAATCATTTCCATTTTTGCCAGAGGCTGCTCCATCAAAGCACAATTTCATCTAT TTTTATTCAATGCAGAAGAAGCAGCAATGTCAAAGCTCTGTGACTTGCAAATCCACATTAATGACGAGGAAACATTCCTT TTGAATGAGAAATTAATATCAAAATACTGTGGAAGAGTGAAGATATTGTTGAATCAAGAAAAGAGAAGATGTCATATCAA GAAGATGAGTATTGAAATCAATGATTTCCCTGGAGGGCCAGATGGGTTTGAGCTGGTTCTGAGATTCTGTTACAACAATG GCAAAATCCTCATAACTACATCCAATGTGCTTATCCTCCATTGTTGTGCCCTCTATCTTGAAATGACTGAGAAGGTGTTT ATTAACAATCTCTTGAAACAAGCAGAAACATTTCTTGAGGGAATCAATTATTGGACATGGAATGAAACACTTGTAAGCCT TAAGAGTTGTGAGCTATTTTATACATATTTGGAAAGGTGTGGTTTCCTGGAGAGTATCATTTGTGCAATTTCAGCAAAGA TGGCTCAAAATTCTGATGTAAACCTCCTCACTTCCTCATCTTCCTCTCCCCAATCTTCACCTGAAAGCAATTGTGCAAAG AGATTAATTTCTTCAACCCAACTTACTCCCAAGATGATCAAGTCAAGTTTTCCAAGCAAAGCATGGTGGTTTGATGATTT TGCTACTTTACCCCCAAAGATCATTGAGAAGTTTGTTAAGTGTAATGGGGCCTACCTTACAGATAACAAAAATTTGCTTC TCACAAGGTTTCTGCTTCATTATCTGAAAACAGTTACTCCAAAAAGAGAGGTTAGTGAGTATACTGGTCTTGCAGAAACA GCTGCTTATGGGGTCATATTTGTTAGCAATAAGATTAAGCCTTTCTCTTGCAGAGGAATTTTTTGGGTATTGAGGATTGT ATCAAGGTTTGGGATAAGTGAAGAGTGCAGAATGGAAATGGAGAAATTGATTGGTGGGATTCTTGAGCAAGCAACTTTGG ATGATGTTCTGGTTTCTGGGCATCATATGGGACTTTACTATGATGTAACTTTTGTGATAAGATTGATTGAAGTGTTTGTT GATATAAATGGCTCTAATGTGCAGAAACTGAAAAAGGTTGGTCGACTAATTGACAAGTATTTGACCGAGATATCCCCTGA TCAGAACCTCAAGATATCTACATTCCTAGGAGCTGCAGAAAGTTTGCCTGATTCTGCCAGGGATTGCTTTGATGGGGTCT ACAGAGCCATTGACATCTATCTTGAGTCTCGTCCAGTGATCTCATTTGAAGAGGGGTCAAAGTTGTGCATATGTCTTAAT TACAATAAACTCAGCTTTGAAGCTTGCAAGGATCTAGCCAAGAACCCCAGAATACCTCCAAGGATTGCAATGCAGGCTCT TATTTGCCAACAAAAGAATATTCCACTTTGTGACTTTGGAATTGAAGGAAGTGAAATCATGAGCCCTTCCCAAATCATTT TGTATGATGAAGACAACACAGACAGTTTCTTGGAAGAGAAAGAAGATATAAAACTAAATCTGGAGAGAATGCAATGGAGA GTGAGCGAATTGGAGAAATTGTGCACCGAAATGAAGGTTCAGATGTTAAGGTTCACTCGCCAAAATGTATAG
Protein sequence (LotjaGi2g1v0017600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKHPFPCKNNEVHLVKDRARGFYSLPCWICPFCIYIIISIFARGCSIKAQFHLFLFNAEEAAMSKLCDLQIHINDEETFL LNEKLISKYCGRVKILLNQEKRRCHIKKMSIEINDFPGGPDGFELVLRFCYNNGKILITTSNVLILHCCALYLEMTEKVF INNLLKQAETFLEGINYWTWNETLVSLKSCELFYTYLERCGFLESIICAISAKMAQNSDVNLLTSSSSSPQSSPESNCAK RLISSTQLTPKMIKSSFPSKAWWFDDFATLPPKIIEKFVKCNGAYLTDNKNLLLTRFLLHYLKTVTPKREVSEYTGLAET AAYGVIFVSNKIKPFSCRGIFWVLRIVSRFGISEECRMEMEKLIGGILEQATLDDVLVSGHHMGLYYDVTFVIRLIEVFV DINGSNVQKLKKVGRLIDKYLTEISPDQNLKISTFLGAAESLPDSARDCFDGVYRAIDIYLESRPVISFEEGSKLCICLN YNKLSFEACKDLAKNPRIPPRIAMQALICQQKNIPLCDFGIEGSEIMSPSQIILYDEDNTDSFLEEKEDIKLNLERMQWR VSELEKLCTEMKVQMLRFTRQNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| Phobius | 43 | 583 | 541 | - | – | |
| PANTHER | 63 | 575 | 513 | 9.1E-247 | ||
| PANTHER | 63 | 575 | 513 | 9.1E-247 | – | |
| SUPERFAMILY | 64 | 157 | 94 | 3.3E-7 | ||
| ProSiteProfiles | 67 | 133 | 67 | 8.524 | ||
| CDD | 68 | 165 | 98 | 5.41177E-16 | – | |
| ProSiteProfiles | 261 | 513 | 253 | 53.328 | ||
| Pfam | 262 | 489 | 228 | 8.0E-48 | ||
| Coils | 547 | 574 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0017600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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