Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0018600.1

Overview

Field Value
Gene ID LotjaGi2g1v0018600
Transcript ID LotjaGi2g1v0018600.1
Lotus japonicus genome version Gifu v1.2
Description O-methyltransferase; TAIR: AT5G54160.1 O-methyltransferase 1; Swiss-Prot: sp|P93324|CHOMT_MEDSA Isoliquiritigenin 2'-O-methyltransferase; TrEMBL-Plants: tr|I3T9J0|I3T9J0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0018600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:6696527..6699396) extracted from Lotus japonicus Gifu genome v1.2.

GCAACTTCCTAGTGGGTAGGAAACTAGAACTAACTAGTAAAAATGAGTGCCAATTCCAAACAAAATCAGCTTCCGACAGA AGTAGTAGAGGTTGATAATGCTTACCCCACTGCTTTGATGTTATGTTTCAGTCGAATCTTTCCTGCAATTCTGAACGCTG CAGTTGATCTCAACTTGTTTGAAATCATAGCTAAAGCGGAAAGCCCATATGGTTCAAGCTTTTCTGCCTTTGAAATTGCT TCTCTACTTCCCTACAAACACTCTGAATTAGTTACAAGGCTTGTGCGCATGTTACCTATGCTAGCTAGTTATTCTCTTCT AACTTGTTCCCTTCGCACCAATGATGATGGTACGAGAGAACAAGTTTATGCACTCTCACCCGTTGGTGAATACTTTGCAT TTAATAACCATGGAGGAGGCTCTTTAGGTCCCGCTTTAACCTTATTTCATCGAGGTTATCAATATATTTGGTAATTTAGT CGAAACTCTTTTTATCATTATGTTCTAACACATTTTCATTTTATTTTATCTTTCTATCTTTAAATATATTTTTCAATGCT TAATTGCACTTTTTCTAACATCTTTCGCAGTAGCGCCATTTGGATCTATAATGTTTAAAAATAGTGATTTTTGTCCTATA ATTTACATTAGTAGAATGTTCAAATTTTAATAGTCTACTTAGGAGGAACTCATTTATACACTTGTAACTCCGAAAAACCT TAAACCTACTGCTCTTTTGAAATTAAAGATGAGGTATATATATATATATGCTAACTATATAGCATCCACTTGGAGGTACA TGTCATTAAATGAAGACCACCTAAACCAACTCTGTTAAAATTTAGACGTCTTTCTTACCAAAGAAACTTCGTAACACATT GTAAGATTCTATGACCAAAATTGGTCCTTTAAAATATGAGAGAGCAAAATCCCGCAATCGCATTAGATGGAAAAAAAAAA GGCTCTTTTTCTATCAAGTTACCTGTTGTATTTTTCATTTTTTTTCTCCTCATTTTTTTTTCTGAGTGTGAGTGCAGTTG CGGTGCCAACCGAACTTTTTCCTTAACCATGTATGACAAGTGATCATGGACTTTCAATAGGGTTATGATTGGTGACAACT AACAATACATACACCTTTTTACACCATCATTCATCTCTCTTACTCTCGTTTCTCTCTCGCATGTACAACCATTAGTGATT TACCAAATATTTTCCCTTTAAATATTTAATATGATCTTGTGCTGTTTCGTTTTCAGGGATAATGTAAAGGATGCGATTAT AGACCCTCGTAACAATAATCAATTTCAAGAAGTTCATGGGTTGCCCCCTTTTCCATATATGGAGAAAGATAAAAAGTTGA ATCATATATTTAATGAAGCAATGGCACATGCTGGTCCGTTAGAAATGAAACAGATCCTCAAAATATATAAAGGATTTGAG GGAGTATCAACATTGGTTGATGTTGGTGGTGGAGTAGGGCATGTCTTAAAACAAGTTATCTCTGAATACCCTTCAATAAA AGGGATTAATTTTGATTTGCCTCAAGTGATTCAAAATGCACCACCTCATCTAGGTAATTGCGTATGTCCTCTATATCTAT GCGCTTTACAAAAAAATGAATTGATCAGTTTTACAACAAAAAAATTGAAAATTATCATCATTTAGCCAATATAAAAAATA ATGCTCATTTTGCTTGAAGGGGTAGAGCATATTGAAGGAGAAATGTTTGAAAGTGTTCCAAAGGGTGATGCCATCTTACT AAAGGTCAGTGAAACATGCATGCACATTACAAGAAAACGAAGTTTGTATTCTTAAACAATTTATTATGATTTTTTTTTTT CTTTCTTACGCTGTTGGTTGGAGAGAAATTCTCCAAATCAACAAACTATTCAGAAAACCCGCACAGTTTAATGATAATAA GAAAAAATTTGAAACAAAATTTTAATTTGGGGTTTTCTCTTATCATTTCAGCGTATATGTCACAACTGGTCCGATGAAGA ATGTGTGATGTTTTTAAAAAATTGCTACAAAGCTTTGCCAACATGTGGAAAGGTGATTATTATAGATTGTATAATTCCAG AAGTTCCAAACCCGAGCATTATGTCAAAGTATGCATATGCTTTTGACATGGTCATGTTTTTAGTACATGGTGGAAAGGAA AGAACTGAAAATGAATTCCGAAGCTTATGCTCTAGCTCTGGATTTTCCAAATTTCATGTTGCGTGCAGTGGTATCTCGTC TACGTTAGGAGTGATGGAATTTTATAAATAAAAACTACTATCATCAGGTTACCCGTTTTATTTTTCATTAAATATGTGTA GGTTAATTTTTGTGAAAAAAAGTCCATCAGGATATGTTATTTTCTTGTTTTCTCTGTGAAGCAACTTGTATTGTCGTATG TTGTCAGGAACATTAAAAAAGTTTGAGTGGAAATAATGGAGCTACGTGTAATATAGTTTTCTTTGTTTTTGTTTTTTTTT ACTTTATTCCCCTTTATTGTTATCATGCTACAAATACAGGAAATTAGAAGTCATTGATAACAATAGATACACGCACTAAA AAAAAGTGTTATTTAGCGGAGGTTTTAGTAACCCCACATGCTACGTTAATTAATTTCCAATATATTAGGGCGGGTTTTAC AAAACGTTGAAATTTACTCGTGCAATTTTTTGAATTTTCCCCCTTTCATAATTTTTCTGATCACGATAAATCTCTCGAGC TTTCAACTCACTCTCACTCTTCTAGAACTTTTATCTCTCGTTTCTCATTCCCGCTCTCTTCGGAAACGTAATGGAAGCTC TTGTTTCTCCTGATTCACTCTCGATTCCTCTATCGATTTGAACCGTAGATCCACTCTCAATTTCACTATT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0018600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTGCCAATTCCAAACAAAATCAGCTTCCGACAGAAGTAGTAGAGGTTGATAATGCTTACCCCACTGCTTTGATGTT ATGTTTCAGTCGAATCTTTCCTGCAATTCTGAACGCTGCAGTTGATCTCAACTTGTTTGAAATCATAGCTAAAGCGGAAA GCCCATATGGTTCAAGCTTTTCTGCCTTTGAAATTGCTTCTCTACTTCCCTACAAACACTCTGAATTAGTTACAAGGCTT GTGCGCATGTTACCTATGCTAGCTAGTTATTCTCTTCTAACTTGTTCCCTTCGCACCAATGATGATGGTACGAGAGAACA AGTTTATGCACTCTCACCCGTTGGTGAATACTTTGCATTTAATAACCATGGAGGAGGCTCTTTAGGTCCCGCTTTAACCT TATTTCATCGAGGTTATCAATATATTTGGGATAATGTAAAGGATGCGATTATAGACCCTCGTAACAATAATCAATTTCAA GAAGTTCATGGGTTGCCCCCTTTTCCATATATGGAGAAAGATAAAAAGTTGAATCATATATTTAATGAAGCAATGGCACA TGCTGGTCCGTTAGAAATGAAACAGATCCTCAAAATATATAAAGGATTTGAGGGAGTATCAACATTGGTTGATGTTGGTG GTGGAGTAGGGCATGTCTTAAAACAAGTTATCTCTGAATACCCTTCAATAAAAGGGATTAATTTTGATTTGCCTCAAGTG ATTCAAAATGCACCACCTCATCTAGGGGTAGAGCATATTGAAGGAGAAATGTTTGAAAGTGTTCCAAAGGGTGATGCCAT CTTACTAAAGCGTATATGTCACAACTGGTCCGATGAAGAATGTGTGATGTTTTTAAAAAATTGCTACAAAGCTTTGCCAA CATGTGGAAAGGTGATTATTATAGATTGTATAATTCCAGAAGTTCCAAACCCGAGCATTATGTCAAAGTATGCATATGCT TTTGACATGGTCATGTTTTTAGTACATGGTGGAAAGGAAAGAACTGAAAATGAATTCCGAAGCTTATGCTCTAGCTCTGG ATTTTCCAAATTTCATGTTGCGTGCAGTGGTATCTCGTCTACGTTAGGAGTGATGGAATTTTATAAATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0018600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSANSKQNQLPTEVVEVDNAYPTALMLCFSRIFPAILNAAVDLNLFEIIAKAESPYGSSFSAFEIASLLPYKHSELVTRL VRMLPMLASYSLLTCSLRTNDDGTREQVYALSPVGEYFAFNNHGGGSLGPALTLFHRGYQYIWDNVKDAIIDPRNNNQFQ EVHGLPPFPYMEKDKKLNHIFNEAMAHAGPLEMKQILKIYKGFEGVSTLVDVGGGVGHVLKQVISEYPSIKGINFDLPQV IQNAPPHLGVEHIEGEMFESVPKGDAILLKRICHNWSDEECVMFLKNCYKALPTCGKVIIIDCIIPEVPNPSIMSKYAYA FDMVMFLVHGGKERTENEFRSLCSSSGFSKFHVACSGISSTLGVMEFYK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF005739
1 369 369 2.0E-108
IPR016461
PANTHER
PTHR11746:SF223
10 369 360 1.9E-182 –
PANTHER
PTHR11746
10 369 360 1.9E-182 –
SUPERFAMILY
SSF46785
17 119 103 1.09E-18
IPR036390
ProSiteProfiles
PS51683
25 369 345 66.144
IPR016461
Gene3D
G3DSA:1.10.10.10
31 196 166 1.3E-103
IPR036388
Pfam
PF08100
36 88 53 5.7E-10
IPR012967
SUPERFAMILY
SSF53335
135 355 221 3.93E-52
IPR029063
Pfam
PF00891
143 349 207 8.4E-65
IPR001077
Gene3D
G3DSA:3.40.50.150
178 358 181 1.3E-103 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008171
Molecular function O-methyltransferase activity Catalysis of the transfer of a methyl group to the oxygen atom of an acceptor molecule.
Subterm of
GO:0046983
Molecular function Protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0018600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…