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LotjaGi2g1v0018900.2

Overview

Field Value
Gene ID LotjaGi2g1v0018900
Transcript ID LotjaGi2g1v0018900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ulp1 protease family, carboxy-terminal domain protein; TAIR: AT1G10570.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C; TrEMBL-Plants: tr|G7IJ15|G7IJ15_MEDTR Ulp1 protease family, carboxy-terminal domain protein; Found in the gene: LotjaGi2g1v0018900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:6987703..6991166) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTTTCCCCAAACCCTACCCCGCGCTCCACTTTCCAATTCCCTCTAAAACCCGTATCTCTTCTTTTGCTAGCAGTGTC AGTTTCCTTCTGAAACCCTTGCTCTGAAACCCTTGCTGATCTTCAATCTCTGCACCATTGACGTTCTCTGTTGCTCCATC TCTGCGCCATCTCTGTTCACCGAGCCGTAGATCCTTGCAATCGACCCACATCTCTAAGAGCCGTTTCTGCTGCTTCTTCT CCTCAAGGTTGGTCACACTCCTTAACTAATTGTTTGGGTGATTTGGTGGTGAGGGTTAGAATTGAGGAGGGTTGGGGTTT ATATTTTTAGCATTTGTACTCTTCAGTATTTTTCTTTGCTGTATGTGTTTTAGCTTTTCTGGTTTCTTTTGTGGTGTTGG AGCCCCTGTTTTGTTCTGTTTTTGCTATGACTATGTGGATAAGCCTTGTTCCCATGCTTTGATACATATTTCTCATGACT ATGGGAATTTGAAAGTCAAAGTGAAACTGCAGTAAAAAACTGACAATTATTTTCTTATGTTTGGAAGATGAAGGAAATAT TATTAGATATCAAAGCATGGGAACAAGGCTTATCCAAACCTAGAAACATGGAGCAAACCCAGAAATTGAGTATGGTTGGT TTGGATGGCCACTATTTGGAGTATTTGGGGTCTTAGGAATGCCAATATATTCAGAGGGACTTCAATTAATCTAGAAAATT TACTAGATGTGATTCAGTTTAAGTCTTGGAGCTGGATGAAGGGTAGACTTAAGGGATTTGCATGTTCCCTCTATGAGTGG CAGTGTCAACCTATGCACTTTATCAATTTGCTGTGAAGTGTTGGTAGCGGGGCTTTGATCTGAATTAGCTTTGGAGCTTC CTATTTGTTATAGATGCATAGCCTCTCCTTGTCTCCTTGTCTCTTTCTTGTTTTTGCCATGGGGTTCTGTTACCTTTGCT GCTGTCCTTGTTGCTACTGCCAGCGTGAGGACATAGGATCTTTTTAGTGTGCTGGTTTTTTGCTACTGTGCTATGTTTTC ATTGATCATTGTATATTCCATTTTTTCTTTGTACTTGGGTTGAAATACCCCTAGTATTTCATCTTAATACAATTTTGCTT ATCCAAAAAAAAAACCATTTTCTTTTCTTGTCGTCTTATAGTAAGGAAAGGTTAATGCATGTGACAGTGTATACCGTATA CCATTGATCTTGGCTTGATTACTGATTGATTGGAGCCTTGATATTTTTTATAGATTGTGCTCAGTTTCCACAACAGTCAA AGGAACCAACATTTTTGCTAGATGGGTTGGCATTTGGGGGTATGACAATGAGAACTTATTTTGATAAAAATCCCCATTCT TCTAAATAAACCCTTGAAAGCTGTATTAGAACAATTTTATGATCAAATTGGAAAAGAAATTGGATAGCTTAAAATTTTCT TTTGCTTAAAAAATCCACCATATTCTAAATTTCTTTTGCAGTCACTGTATGACACAACTACCCTGCTGGCTGAAAGGTGT AATCTTCAATCATATAGCAATTGTTATAAATTAGTTAGCTGAATATTAGTTTTGCCCACACTAATTTTTTTCCAACCTCA CTTTGTTTTGCTGTTTCTGCTACATTTAGCTGTTACATGTTGAACCTTCTTGCATTAAATTCTTATGATTGTCTTTACTT CAAAAATTAAAGCTGCGGGTAACAAATCAAGGTTTTGTCAAAGTCAAATAGGGTCATTACATTTTCTCTGCCATTAATTC TGTGTAAAGGCAGATTTATCCAATTGCTATTATATAGAATCCTACGTGCTTCAAAAACTGGTTAAGTTCCAAATCTCATA CTTCCACAGAGGGGACATTGCATTAGAAATGGGAAGGTTGAGTTCAAGTTGTTATAATGACTCAATGCGCGGTGATCCAA GAACTTACACAGCCATGAAAAACTTGTTTGATTCGTAAGATATTTGTATATATTCTATTTGTCTCATTTATATAATATAA CATTTGCTTATATCAAGTTTTCCTCTATTTTTGGTAGAGGTTTAATGACTTATCGCGCTCAAAGAGAACATGTGTTGCCC AAAAAGAAATCAAACACCATCAACTGGAGCTCTGTTAAGGTATATATAAAACCTAAAATTGTAACTCACATGTGATATCC AAATTCGGCTCACTATCACAATTAGTTAAAAATTCATTTGGTTTTATAGTGCCCGCATCAAATGAATGATGTAGATTGTG GTTATTATGTATTGAGATACATGAGGAGTTTGATCCTTTCTGAACTCCCACATCCTGTAGATAAGGTATGCAATTTTAGT CCTAATGTTATTGTAATTATTAAATCTATTGGATAATATAATTCAATTATAACTTTAGTGTTTTATGTTTTTTAATGACT AGGATGCTTATGACTTAAGTTGCAACTTCTTTAGTCAAGATCAAGTGGATGAGATAAGGGAGGAGTGGTCTTCCTATGTT CTTCAGAATTTCATTATGAATAAGTAGCACAATTTTTTATTGGGATGTAAGTTTATCTTGAACCTTTAAGCTTGTGATTG CTGGGTTATAATGTAATAAATTTGTGTTGAAAGTTTGACAATGCGTGATAGGGGTGGTGTTGTCAAGAGCCAATGTTAAT TGTTTTGGTGGTAGATGTGGGGTGTGTCTTTAAAGTTCTGATTCAGATTCATGATGCCGGTTGGTTGTGTTGGTGTGGTT GATTGATTGTTTGATTGCTAGTTGGTTTTAATTGTCTAAATACTTTTATGTGTAGACTTTAATATATAAGATAAGATACT GTTGTAATTATCTTAGTCTTTCAAATTATTGTTCTCATGCTTCCTATATGGCTGTCATTTGTATGATATATTGATCCACT GTGCTAGTTTTTTTTGTTAAACTTTGCAATTTATGCACATATTCCAGCTTCTAGAATACAAGTAATGTAACTTAAATGGT GATTATTTTTATATATCTTTATCTAATCTAAATAATTCTAACAGATAAGTTTTTGATGCCAGGAAAAAAGAGGTTTGCTG CTGAATGGAAGTTCTATGTTGCCTTTGCTACTGAGAAGGAAGACTAACTGCAAAGAAACAAGTTCACTGGTTGTTTCATT TGGAGAAATGGTAATAGACTATGCCTACCATGAGAGGAATGCCACTTACAATGTAGTTGTTGGTATCTAGTTTCCGGGAT CTTAGATCTATGGAATTTGTTTATGGACAATTTTTAATTAATTCGGTTTCTAAGTGTAGTTTACAATCAATGTCTGTTTA TTTAGTTTGTGGGTAGAATTTATTTGAGATCTCAGAACTATATGGAATTTGTTATGGTTTCAGCAAATATATGGATTGAG TATCAACTATGAAATTAGCATTGCTCTAATTTTATTGGTTTATTCCGTCAAAATAAGAATTTATTGGTTTCTGTTAAAAA AAAATGGACTGTCAACAAAAAAAC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0018900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGAAGGTTGAGTTCAAGTTGTTATAATGACTCAATGCGCGGTGATCCAAGAACTTACACAGCCATGAAAAACTTGTT TGATTCAGGTTTAATGACTTATCGCGCTCAAAGAGAACATGTGTTGCCCAAAAAGAAATCAAACACCATCAACTGGAGCT CTGTTAAGTGCCCGCATCAAATGAATGATGTAGATTGTGGTTATTATGTATTGAGATACATGAGGAGTTTGATCCTTTCT GAACTCCCACATCCTGTAGATAAGGATGCTTATGACTTAAGTTGCAACTTCTTTAGTCAAGATCAAGTGGATGAGATAAG GGAGGAGTGGTCTTCCTATGTTCTTCAGAATTTCATTATGAATAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0018900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRLSSSCYNDSMRGDPRTYTAMKNLFDSGLMTYRAQREHVLPKKKSNTINWSSVKCPHQMNDVDCGYYVLRYMRSLILS ELPHPVDKDAYDLSCNFFSQDQVDEIREEWSSYVLQNFIMNK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.395.10
3 119 117 2.7E-9 –
Pfam
PF02902
8 111 104 2.0E-6
IPR003653
SUPERFAMILY
SSF54001
9 116 108 1.1E-10
IPR038765

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of
GO:0008234
Molecular function Cysteine-type peptidase activity Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0018900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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