Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0025800 |
| Transcript ID | LotjaGi2g1v0025800.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT3G03050.1 cellulose synthase-like D3; Swiss-Prot: sp|Q9M9M4|CSLD3_ARATH Cellulose synthase-like protein D3; TrEMBL-Plants: tr|V7B967|V7B967_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0025800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:8740756..8747796) extracted from Lotus japonicus Gifu genome v1.2.
TCCCTGCAGGTATGCGAATAACAATACTGTATTCTTTGATGGAAACATGCGAGCCCTTGATGGTGTCCAAGGTCCAGTCT ATGTGGGAACAGGATGCATGTTCAGGAGGTTTGCACTGTACGGCTTCGACCCACCATTAGTGGATGAGAAGGAGAAGAAA TACAATCCTAAAGAGAGTAGTGAAGGAGGGTCTGATACGCCGGCGTTGAATGCTAGTGAGTTTGATCCAGATCTAGACAT GAACCTACTTCCTAAGCGGTTTGGTAATTCAACCGTGTTATCTGAGAGCATACCTGTGTGTGAATACCAAGGTCGACCTC TAGCTGATCATCCTGCAGTCAAGTATGGACGTCCACCTGGTGTCCTTAGGGTACCTCGCGAACCACTTGATGCCAGTACT GTAGCTGAAGCAATCTCTGTCATTTCTTGCTGGTTTGATATCAACTTATGCCATAAAATATTGTTATTATTGTGGTAGTA TACATGATTATGGACATGATGATATATTGAATATTATTGCAATGCAGGTACGAAGACAAGACTGAATGGGGAGATAGAGT GGGATGGATTTACGGGTCAGTGACAGAAGACGTGGTGACAGGGTACCACATGCATAACCGTGGCTGGCGTTCTGTGTATT GCATAACCAAGAGAGATGCATTTCGTGGATCAGCTCCAATTAACCTCACAGATCGATTGCACCAGATCTTACGATGGGCC ACAGGTTCTGTTGAAATCTTCTTCTCAAAGAACAACGCATTCCTTGCTAGTAAGCGCCTCAAAATTCTCCAACGTCTTGC TTACCTCAACGTTGCCATCTACCCCTTCACCTCCATCTTCCTCGTTGTCTATTGCTTCCTCCCTGTGCTCTCCTTGTTCT CCGGTTTCTTCATTGTCCAAACTCTCAGCATAGCCTTCTTAATCTACTTGCTCACCATCACTGTATGCTTAATCCTGCTC GCCATTCTTGAGGTTAAATGGTCTGGCGTCGAGTTGGAGCAATGGTGGAGGAATGAACAGTTTTGGCTCATTTCTGGCAC CAGTGCTCACTTGGCTGCTGTGGTGCAAGGGCTCCTTAAAGTCATGGCTGGGATTGAGATTTCTTTTACTCTGACGTCCA AATCAGGAGGGGAAGAAGAGGAAGATATGTTTGCAGATCTGTATATTGTCAAGTGGAGCTCATTGATGATTCCGCCGATT GTTATTGCCATGATGAACGTCATTGGCATCGCGGTTGCGTTTTCAAGGACCATTTACAGCGCGAATCCGCAGTGGAGCAA GTTCATTGGAGGAGCGTTCTTCAGTTTCTGGGTGCTTGCTCATTTGTATCCGTTCGTGAAAGGGTTGATGGGGAAGAGAG GGAAAGCACCCACCATTGTGTTTGTCTGGTCAGGTCTCATTGCAATCACGCTTTCTCTGCTTGGGATTGCTATCAGCCCA CCCAAAGGCGCTGAAGGACAAGGTGTTGGAGGAGATTTCCAATTCCCATGAAATCAATGAAAGCATCCATTTCATTCACC TTAATATATGTATGTGACACTAATATCTCTTTGTAAACTTTTTTATCGTGTAACTCTTAGAATTTAGATGTTTACATTTA AATGAGGGGTGAGCATGCTCAGAGAGTTGCTTTTATTTGGTTGATGTTTCTATTAAGAAATAGATGGTGTAATTAAAGGG GTTGTCTAAATGATCCATGTGGGTTACTAACTCACAACTCAATAGACCAATAGAATTTTTTTTAAATAAATGAATAAATA AAATATAAAAATTTCAACTCACTTATCTTCAATGTTATTGGACGATGAGTTATTAACCCAAACTTTCTGATGGGTCATTT AGACAACCCGTAAGTAAAAGATCTCACTTTACATATTTCATGTGTTGGTAGTTGGTATAATAGGACTACAATCAAAAGGG GAATTAATTATTAATCAGAAAACCCTATAAAACATTTTGCTCAATTCATTTTAAACTTCCAAAAAGTGAATTGCATAATC AGTCTTTCACGCAAGAAATACATCAGAGATGCATAAACTTGCATGGCAATGACTATACACACTACTTTGCTCTACAATGT GAAGTCTATCATATAAATTCTTATGTAAAAACTGAACATAAATATTGGTTAATGTTAAAAATAGTTTATTTATTAGAATG AGGCTGTTGGAATCATGAGATGAAAATTAAGCTAAATGTACGAATATATTATTCATAAATGCATGCATATATTTAACGTT ACATTTGTGTCACAAACACTCTCCTAGAAAACTGGAAATGAGAACCTCAAAAATAGCATAATAGGATGGACTTGGTCTCT CACCGTAAATCCATCTTCTTTTCCGCCAACTTTCTGTATTCTGACAAATCTCCCATTGTCAATCAAAATTCTTCCCTCTA ACCACGTCCATTTGTTCTCCTACCATGAATAATTTGAACTTGCATTTTCATTCTTCATTGTAGCTATGGGTTTTACAATC TGGCTTTGGCAGAGTTAAACTCATTCTTCATAAGAACCAATGGCGTCTTCATTGAACAACCAACCTTCCAAGAAGTCTCT ACGTAATTCTGGAGGAGGATCAGGAGGAGCAGGTAGTTCTCAAGGAGGAGCACGAAATAACTCCTCTGGCGGACCTACTA TAAAGTTTGCGAGACGAACATCAAGTGGGAGATATGTGAGTTTGTCTAGAGATGACATTGAAATGTCATCAGAGTTGTCA GGGGACTACATGAACTACACTGTTCATATTCCCTCTACCCCAGATAATCAACCGACGCCGGACTCATCTGTTGCTATGAA AGCTGAAGAACAATATGTTTCAAATTCCTTATTTACCGGCGGATTCAACAGTGTAACCAGAGCCCATCTAATGGACAAGG TGATCGACTCAGAAGTCAGACATCCTCAAATGGCAGGCGCCAAAGGCTCTGCTTGTTCAATCTGTGATGGCAAGGTCATG ACGGATGAGAGGGGACATGACGTGACTCCATGTGAGTGTAGGTATGTATTTATGTATGTATGTATGTACATTTGTGCATG TGCGCAGAATCATTTCTTAATTTTCAAAATTAATTCGAACTAAATTAGTTATAAAGTAATTATTCCAATTCAGGTACAAG ATTTGTAGAGATTGCTTTTTAGATGCGCAAAAAGAAACAGGTCTATGCCCAGGTTGCAAGGAGCCATACAAAGTAGGGGA GTATGAGGATGATACTGAAGATACCCCAGATTATGCTAGTGGGGCATTGCCATTACCTGCACCAAATGGCTCTAAGCAGA ATCCAAACAACATGTCTGTTATGAAACGAAATCAAAATGGAGAATTTGATCACCAGAAGTGGTTGTTTGAGAGCCCACTT GATTACGGGCATGGTACTGCTATTTGGCCCGAGGATGATGATTGTGATGATGACCTTAAAGGAGAAGCATTTAGTTTATT GGAGAAGCCTTGGAAGCCTTTAAGCCGAAAAATGCCAATTGAATCCCGCATCATGAGTCCTTACAGGTTACACAAATACA TTGTCTTAATTTCCTTATGCTGATAATTACTCCAATGAATGCCTAATTATTGTATTTTTTGTGCAATTATTTGTAGGATG CTTATTGTAATTCGCTTCGTTGTGTTGTGCTTCTTTTTACACTGGAGAGTGGCACATCCAAATGAAGATGCAATATGGTT GTGGCTCATGTCAGTTACTTGTGAGATATGGTTTGCCTTCTCATGGCTACTTGATCAAGTTCCCAAGCTTTGTCCTATCA ACCGTACCACTGATCTATCCGTCCTTCACGAGAAATTCGATAGTCCGTCTCCAGACAATCCCACAGGGCGATCAGATCTA CCCGGCGTCGACCTCTTCGTGTCCACCGCGGATCCGGAGAAGGAGCCACCTCTAGTCACTGCCAATACCATTCTTTCTAT ACTAGCAGTTGATTACCCGGTGGAGAAACTGGCGTGTTACGTTTCTGATGATGGAGGTGCTCTCTTGACTTTCGAAGCCA TGGCTGAGGCTGCGAGCTTTGCTAACTTATGGGTTCCCTTTTGTCGAAAACACAACATTGAGCCGAGGAATCCGGAGAGT TACTTCAGCTTGAAAGTTGATCCCACCAAGAACAAAAGCAGAACAGATTTTGTCAAGGACAGGAGAAGGGTGAAGAGGGA GTATGATGAGTTCAAAGTGCGCATCAATGGCCTTCCGGATTCCATAAGGAGAAGATCTGATGCATTTAATGCAAGAGAGG AAATGAAGATGATGAAGCATCTCAAGGAGAAAGGGGCTGACCCTTCTGAGCCTATCAAAGTATTGAAGGCAACTTGGATG GCTGATGGCACCCATTGGCCTGGAACATGGGCTTCTCCTTCTAGTGAACATGCCAAAGGTGACCATGCGGGAATTCTTCA GGTATATGCATGATATGTGTATTGTTTTTTATAAAAACCAAAGTAAATATATGATATGATGGAATGTCTAGGTTTATCTG TAGTACTCCCGAATGATGGTATGACTCACTTCAACACTCCGTACAGAAAATAGGAAATAGGAAACTTAATTCAGCTTTAA GACTTGTGAGGGTAGCAACAGTTAGTTTCATTTGATACTGGAGGAACAATGCCTAAGGGTGGGGTGGTAGACATTTCTAG GGTCATTGATGTGATCCTATATAAGATTTAAGTTTGGCTTAAAGCTATAGTGAAACGTGCTAGTTTTTCCATCCATCTTC GAGTGGACTATGGATCCACTAGTCTGGATTGATTCCTTGTAACTTTTTCAGTTTGGTACCCCTTGTACCAATCAATATAT TTGGCTGATAAAAAAAATGTATGCATGCATGTATAGGTGATGCTAAAGCCGCCAAGTCCTGATCCGTTATTGGGGAGGGC GGAAGACAAGATTATAGACTTCACAGAGGTTGATACACGCCTGCCAATGTTTGCATATGTGTCCCGAGAAAAGCGACCAG GTTATGATCATAACAAGAAAGCAGGTGCAATGAATGCACTTGTTCGAGCATCTGCTATTCTATCAAACGGGCCATTCATT CTCAACCTAGACTGTGATCACTACATCTACAACTGCAGGGCAATACGAGAAGGAATGTGCTTCATGATGGACAGAGGTGG CGAGGACATATGTTACATTCAGTTCCCACAAAGATTTGAAGGCATTGATCCCTCAGACAGGTATTATAATGTTTATTTTT CTTTCATTTAATCATTATTCTAAATTTGCTTAGGGTGTATTAAATTTTCACTCAGTTCCTATTTGTTCTGGTTCCGTTAT GGTAGGTACGCGAATCACAACACCGTGTTCTTCGATGGGAACATGCGAGCTCTTGACGGTGTCCAAGGTCCAGTCTACGT GGGAACAGGATGCATGTTCAGGAGGTTTGCATTGTACGGCTTCGACCCTCCGTTAATAGATGAGAAGGAGACGAAAAAAA ATCCTAAAGAGAGTAGTGAAGCAGCCTCTGATAGACCTGCGTTGAATGCTAGCGAGTTTGATCCAGATCTAGACATGAAC CTACTTCCTAAGCGGTTTGGTAATTCAACCATGTTGTCTGAGAGCATACCTGTGTCTGAGTACCAAGGTCGTCCTCTTGC TGATCATCCTGCAGTCAAGTATGGACGCCCACCTGGTGTTCTTAGGGAACCTCGCGAACCGCTCGATGCCAGCACTGTGG CTGAAGCAGTCTCTGTCATTTCCTGCTGGTGCGTTTGATTATGAATATGATTTCACTTTCTTGAGAATTGATTCACTCAC ACTCCTCTTTCTCTTCTATCTCATTTTTACTATTTCTTCTTCTTATATTTCTCTCTGCAATTCCTGTCACATCACTTATC ATATTACTCTTTTTTCTCTCTTTTCCTCATATATCACGAACGTGAAATGGTAAAAAATGTGTGAAAGAAACATCATTGCA TTTTCTCCTTTCCCTTTTAAGTCACTCTTTTTATTTCTTCATTGTACTTGGTGATACCTTGAATATTATTGTAATGCAGG TATGAAGACAAGACTGAATGGGGAGATAGAGTGGGATGGATTTATGGTTCAGTGACAGAAGATGTGGTGACAGGGTATCG CATGCATAACCGTGGCTGGCGTTCTGTGTATTGCATAACCAAGAGAGATGCATTTCGTGGATCAGCTCCAATTAACCTCA CAGATCGATTGCACCAGGTCTTACGATGGGCCACAGGTTCTGTTGAAATCTTCTTCTCAAAGAACAACGCATTCCTTGCT AGTAAGCGCCTTAAAATTCTCCAACGTCTTGCTTACCTCAACGTTGGCATCTACCCCTTCACCTCCATCTTCCTCGTCGT CTATTGCTTCCTCCCTGCGCTCTCCTTGTTCTCCGGTTTCTTCATTGTCCAAACTCTCAGCATAGCCTTCTTAATCTACT TGCTCACCATCACTGTATGCTTAATCCTGCTTGCCCTTCTTGAGGTTAAATGGTCAGGCGTCGAGTTGGAGCAATGGTGG AGGAATGAACAGTTTTGGCTCATTTCTGGCACCAGTGCTCACTTGGCTGCTGTGGTGCAAGGGCTCCTTAAAGTCATGGC TGGTATTGAGATTTCTTTTACTTTGACATCCAAATCAGGAGGTGAAGAAGATGAAGACATGTTTGCTGATCTGTATATAG TCAAGTGGAGCTCCTTGATGATTCCACCGATTGTTATTGCCATGATGAACGTCATTGGCATCGCGGTCGCATTTTCGAGA ACCATTTACAGTGCGAATCCTCAGTGGAGCAAGTTCATCGGAGGAGCATTCTTCAGTTTCTGGGTGCTTGCTCATTTGTA TCCGTTCGCGAAAGGTTTGATGGGGAAGAGAGGGAAGACACCCACCATTGTGTTCGTTTGGTCTGGTCTTATTGCAATCA CGCTTTCTCTACTTTGGATTGCAATTAGCCCACCCAAAGGTGCCGAAGGACAAGGTGTTGGAGGAGATTTCCAATTCCCA TGAAATTAATGCTAGCTTCCATTTCATTCACCTTAATATATGTATGTAACACTAATATGCTTCTGTAAACTTCTATATCA T
CDS sequence (LotjaGi2g1v0025800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAACCGTGGCTGGCGTTCTGTGTATTGCATAACCAAGAGAGATGCATTTCGTGGATCAGCTCCAATTAACCTCAC AGATCGATTGCACCAGATCTTACGATGGGCCACAGGTTCTGTTGAAATCTTCTTCTCAAAGAACAACGCATTCCTTGCTA GTAAGCGCCTTAAAATTCTCCAACGTCTTGCTTACCTCAACGTTGGCATCTACCCCTTCACCTCCATCTTCCTCGTCGTC TATTGCTTCCTCCCTGCGCTCTCCTTGTTCTCCGGTTTCTTCATTGTCCAAACTCTCAGCATAGCCTTCTTAATCTACTT GCTCACCATCACTGTATGCTTAATCCTGCTTGCCCTTCTTGAGGTTAAATGGTCAGGCGTCGAGTTGGAGCAATGGTGGA GGAATGAACAGTTTTGGCTCATTTCTGGCACCAGTGCTCACTTGGCTGCTGTGGTGCAAGGGCTCCTTAAAGTCATGGCT GGTATTGAGATTTCTTTTACTTTGACATCCAAATCAGGAGGTGAAGAAGATGAAGACATGTTTGCTGATCTGTATATAGT CAAGTGGAGCTCCTTGATGATTCCACCGATTGTTATTGCCATGATGAACGTCATTGGCATCGCGGTCGCATTTTCGAGAA CCATTTACAGTGCGAATCCTCAGTGGAGCAAGTTCATCGGAGGAGCATTCTTCAGTTTCTGGGTGCTTGCTCATTTGTAT CCGTTCGCGAAAGGTTTGATGGGGAAGAGAGGGAAGACACCCACCATTGTGTTCGTTTGGTCTGGTCTTATTGCAATCAC GCTTTCTCTACTTTGGATTGCAATTAGCCCACCCAAAGGTGCCGAAGGACAAGGTGTTGGAGGAGATTTCCAATTCCCAT GA
Protein sequence (LotjaGi2g1v0025800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHNRGWRSVYCITKRDAFRGSAPINLTDRLHQILRWATGSVEIFFSKNNAFLASKRLKILQRLAYLNVGIYPFTSIFLVV YCFLPALSLFSGFFIVQTLSIAFLIYLLTITVCLILLALLEVKWSGVELEQWWRNEQFWLISGTSAHLAAVVQGLLKVMA GIEISFTLTSKSGGEEDEDMFADLYIVKWSSLMIPPIVIAMMNVIGIAVAFSRTIYSANPQWSKFIGGAFFSFWVLAHLY PFAKGLMGKRGKTPTIVFVWSGLIAITLSLLWIAISPPKGAEGQGVGGDFQFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 279 | 279 | 2.3E-149 | ||
| Phobius | 1 | 63 | 63 | - | – | |
| PANTHER | 1 | 282 | 282 | 4.0E-185 | – | |
| PANTHER | 1 | 282 | 282 | 4.0E-185 | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 64 | 87 | 24 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| Phobius | 93 | 120 | 28 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 121 | 196 | 76 | - | – | |
| TMHMM | 189 | 211 | 23 | - | – | |
| Phobius | 197 | 216 | 20 | - | – | |
| Phobius | 217 | 221 | 5 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| TMHMM | 226 | 243 | 18 | - | – | |
| Phobius | 244 | 254 | 11 | - | – | |
| Phobius | 255 | 275 | 21 | - | – | |
| TMHMM | 256 | 275 | 20 | - | – | |
| Phobius | 276 | 293 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of LotjaGi2g1v0025800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…