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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0053900 |
| Transcript ID | LotjaGi2g1v0053900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid family protein; TAIR: AT5G38510.1 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|Q9FFX0|RBL9_ARATH RHOMBOID-like protein 9, chloroplastic; TrEMBL-Plants: tr|A0A0B2SRZ4|A0A0B2SRZ4_GLYSO Rhomboid protease gluP; Found in the gene: LotjaGi2g1v0053900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:10670532..10676562) extracted from Lotus japonicus Gifu genome v1.2.
GTCCTATCCCACATATATTTTGTGCTGATGGAAAACCCAACAAAGTTTAAGGTACTTGAGCGTGCAACGTGTAACATTGA TTAAAGTGGCAAGTGGGTCCATCCGAATCCTATTAGATGCATTTATTGGCCCTTAAATTTTGCATATCTCTTGTTCCAAA GTGTGAATGGCTAAACAGAGATAAGGTACAATCAGTAATCGCTTGGGTTTCATTATCAAATGTCAATTATGCCATTAATG GAACTATTAAGCAACAACTACCCCAGGCCTCTTTTGGTATTCTGAAGATAAACAACACTTGCACCCTAGAGCCAAGGAAG GTTTACACTTTGGTTTGGTGTTTTAAAGAGGTACCTTCTTTTTTTGCTTAAATTTTTAAAGGAGGTTGTGAATTTGAATA TGCAGTGAGGAAATTCTGGTATTCATTTTGTTTTAAGTGTTTATTTCTTCACCATTCCAATTTGTTAGCTTTAAAACAAT TAAAACAAGGCCTTGAGTGAGGCAATCTTGTTCTGTTTCTACAAGGTAGAAAAAGCTGTTATCATTGGCACTGTTTTTTC TTTGAGCCTTTTTTGGAACCAAACAGAACTCAGTAAGTTTGAAATAATTTATTTCTCTTCGTGTTCTTCTGATAGCATGT CTATAAATCCTTCTACAATTGACTTAAAAGACAATTAATTCAAGGGAGAAGCTTATGTGGTAGTAGACTAGTAGTTTCTG GTTGTCAGAATTGATTCCGAAGAAAAATAAACTGATCCGAGCATGCTAATATGCATGTAGACACCGTAACATGGACATGC ATTCCATGCTGTTTCAATGTTTCTTGCTTTAATTGCAGATTTGAATTGTTTCAACGGCTGTTTTTATTGTGTTTTACTTC TCTAAATGTTGATTGGTTATTAGAGCTTATCTAGTACATTTTTTCTTAGTAGAGAAGCTCCAGTAGTTGTTCTTTGGTCC GTATCCAAGCAGGCTCATAAGATATTGTCTGTTTCATGAATACAGTAATGCTTTCTTCCTTTTGATGTTTGCTTATCCTT TTTTTTTTCATTTTTATGTTTGTGGTGTGTTCTTCAGGTGTTCATGGCTGCATTTCCGATATGTTACAAAACGCGCTACA GGGACCAAAATCTATCAACCCAAAGCGTAATTAGACAGAGTGACAAGAGATTTATGCTTGACTCGGATAATATGCTAAGG TCCTTCCCTTCAAATATCCTTACAAAATCAAACACACAAGAAAGGAATGCACCTAGGTGCATAGTTCTTGGCAGAGATTC TTTGCATAAGACCACGACAAAAGCTCGTAGTCAAGACAGTAACTTAAGCTTCTTTCAGGGATGCCATTCAAAGAAAAAAA AACTTTCCACAGTTTGGTGTTCAGGAGAGTCTAGCTCTATTGAGAAGCAACTAAGATCATTAGATTGCTATTTTGGAAAG CTTCAAGATAATGCAAAGTTAAGAACTTTTGATACATCAAACAAGGTGATGCAGCTGGCGCTTCACAGATTCAGATCAAG AAATGAACTGGAGTCTCTTGATGAGTATCTTGGAAAACTAAATAATGGTAAAGTGTAATTGCTTTGAGTATTATAGAGCT TTCTCATTTATTATCTTTTTGGTATTCTAGTTGACTAGCTCTTCTTAGTAAATTAAATCTTGTGTCAACTGAGAAGAATA ATTATGTTTCAAAGGATTGTGGTAATCGATCGACTCCTTTGCAAGCTCCAACCAAAATTTAAAGTGCATAACATGAATTT TTTAAATTTGTAATGGCTACAAAATAAGTTTTTTTTTTTTCTTTATACAAAAGATGATTTTTTTATACATCTATAATCTT TCCTGTTCCCATGAGATCTAAATACAGCCAATGCGTGATTAGTTTAGGTGGTACATGTTTGATTCTCCTTAAAAAAGGTT TTGTGTATGGAAAAAACCGAGCTACTCCCATCGGGGATATGGATGCTCCTAACTCAAACTGAGCCAAACCAAGAAATCAG AGCTAAATACTGAAAAGATTGAATATGCAACTACTTTTATATGCAGCAGGAATAAATCAAGAGTCTCTTGTGCCATTTTA TGTTGAGAATCGCTGTGAAGAAAATTTAGCACCAAAACAATCACTCAGAAATTATACTGGAAGAACAAACTTTAGGAAAC GCAATACTTATGTGGATCTAAGAAGAATAGAAGGTGTAGGTGGTCCAAATTCTGGTATAGACTCACAGCAGCATGATGAA ACCTCCAGTCTCTATCTAATGTAAGTTCTGATTCCTTTCATAATTTTTGTCTTATCCTTTCAAAGACTACTCTTGTTGTT ATCAACTGATGATAGTCTTTTTCATATTATAAATAACTCTCATTTTCTCTGTTTTTACCTTGGGTGCAGTGGCATATTGG CTTCTGTAAACATTGCAGTGTTTCTATTTGAAATAGCAAGTCCTGTTAGGAATGCTGATCTCGAGCTGTTTTCGCTTCCT CTACTATATGGAGCAAAGATAAATCATTTGATCATGGTCGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTGGTACA AGATTGAGAATTGGGTCTGTGTTACCATTCCACAGATATAGTGTGCACTGTTTGCATAACACCCATCTTCATTTGGCAGG CTCACGAGATTTAATTCTGTTCTCTTTTTTTAATCTGTGCTTTGTCTTTCTCTACATTTACTCGTGAGATTTGAAACATA ATACCTGACAAGATATTGTAATGCCTTATGATCTACGGAGAAAAGGCTTAGGCGTTTTTTTGCTTGCTTATTTTTTAGAA TTGACTTTAGTTCCACGATTTAACTTTCTAACCAACAACATTAAAACACGGCCATTATAGGGTTTAGAAAAGCAGTATAA AAAATCACTCATGTGTTGTCACCACAGTTTAAGCTTTGAGGATAGTTGGTTCATGACATGATATTAGATCCTCTATGACT AAGTGGTCTAGAGTTCAATCATTGTTTCTCCCATTATTCTAATAAAAAAAGTTGTTTAAACACAAGGTAGATGAGTCTGG GCATTGTCCACCCTTCAAGCCCAAAAAGGCTCTTGTGTGGGGCATGTTAGAAATATAATACAAAATAACATTCATGTCAC CCAACAACTTAATCTTCTGAGATAGTTGGTCATGATAATAATAGTCTAGAATTGCTAAGTCAATGTTGTACTTCCATAAA AAGAAAGGAGTTATTGAATCATTGCTCACAACTATCTTGAAAAATCATGAACTTCAAGGGACATAATGCACCATATGTAT AATCTTGATGGGGACTCTAGAGACTCTTTGCAACACTAAAGTGAATAAGTGTCTTCTGCTAATTGTTTAAGACATATACT TAGTACCACATGAAAAACTAATCTCATTGTGACTGTTTTTGCGATGCAGCATGCGGGAATCTTTCACTTGGCTCTCAGTT GTTGGGCTCTTCTATCATTCGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCATGATCTACATACTGGGT GGAGTTTCTGGAAACTTGACAAGTTTTATGCATACACCAGATCCAGCTGTTGGTGGGACTGTAAGTATAATTCTACATTG TCCCGTTCAGAATAGGTTATCTGAGATTATCTTAAAGCATAAGCGTCTATGCAAAGTGTGTGAGAGAGCTTATCTACTAC CTTTTCATAAGTTGCTCGGATCAGCTTATGAATAAGCACTTATATATACCTATAAGTCTATTAACATATTTTGAGCTTAT TTCAAAGTTTATCAAATTAGCTTATCAATAAGTGCTTATGTGATGAGTCATTATTGCCAATTTACCACCAAATGCACCCT TGTTTAGTGTTTTGGGGGAGGATTAATGTAAAAAAGAACAGAGATTCTTGAGTTAAATTTTGGTTTCTATATTTCATTAT TTGTGTCTTGGTGCTTAATAGTGGTTAGAATAGAAGTAAGAACCTTATTTTTACAAGTTGAATTTAATTTTCGCAATTAT CTTGCTTTCTGTTTGGTTTCTGATTTTTTTTCTTCAACTCCTTGTTTATGTCTAACTTTAACTTGTTCTCAGGGACCTGT ATTTGCAGTAATTGGTGCTTGGCTCATGTATCAAATTCAAAATAGAGATGTTATTGCAAATGATGCTTCAGAGAACCTGT TCCAGAAGGCAATAATAATTACAGCACTTGGCTTCATCTTAAGTAGCCTTGGTCCTATTGATGAGTGGTATGGCTTACAT TACTTCAACGAAGTACATTATAGATTCAGCTAAATAAAATACAAAAGGAACTTAACTTCAAAAGGAAGAGACACACATGT AAATAAACTGGGTGTCTCATGATGAGAGGAAGTTCTCTTCTCATATCAAGGTTATAAAAAATAATACAGCTTGACATGTC AAATATATGCACTAGAGCTAAAGATAGAGTGGAATGGAATAAATATAATAAAAAGGGAAGCGTGGTACATTAAAGCTCCT GCTAGAGGTGGACCTGAGGAAGGGTCCAACCACATGGTCTGATGTACGCAGCCTTACCTATTACACAAGAGGCTGTTTCC AGCACTTGAACTCGTGACATTGCAGCAAATTTTTACAGTTGTGCCAAGGCTCCCCTACAAATGGTAGAAATATATTGAGG AAAATTGAAGTTAACTTGTATGTTTCAAAATGTTCTTTAAACTGTAAAATAGAAACATTTACTTGGTGACTGACTCACTT GTAGGTCACACTTTGGAGCAGCTTTCACAGGCATGGCATATGGGTTTCTAACCAGCCCAGCTCTTCAGTTGGATGATACG TCAGGAACTGGTCGAGAAGAAGGGCTCAAACTTGTTAGAAGAAATGGTGATTCTTGGAAATCGCTGATCATATTCACCAT CTTCATTGCTGTTTTAAGCTCTCTCCCTTTCTTTATGGAGCCCCCTCTCAGTGCTGACACCTTAGAATTTATGTAGATAT TTGTTTGATGCACCATGTCATCAATTCATCTTGTGTCTTCTGAAGATTTCTCTTGCAGGAAGGTGTTGGAAACTCCCACA CAATGACATGTACATTGTAAATAGGAAAGTAGAGTGAGAAGTGCTTAAGGACATGATCACTAAGATTTGGCAGTTTTGTT TCTATCTTTATAAACACTTACAGGGCCACTGTCCTGAAGTTTCATATTGCTGATATTAATGTTTAGTGGAAAGTAATAGA TATGCATTATTAGTTATTAATGTTAGTTTCTCCGAATGATAGCTCAAGTGGTAAGAGATGGTGGACATATGAGTTGGGGA TGAGGAGGTCCAGGGATTAACCCAGGAGGGTTGTAGTTTATTTTTCCGATATACCAAAAAAAAGTTATTAATGTTAGTGG AGGTATGTGTTGTTTTGTGGAATGATTAAGTGCACACTAGGTGAATAGTTGTGACTCTTTGAAATTGTATCACTCAATTA TCATCTTATAAATTCGTAGTACTTTCTATTCCTTAGAAAATTTAGCTCATATTAGGGTTTGACATGTAAAGTTTCACTAA CAACAATAGAAAAAGATAAGCAAATTAATTTTTTTTCCGCTGAGTCTTCGTTACGATGATTCATCCAATTGCAAGGTATG AGATTTGAGTTCAACATTGGAAGTATGAGATTCTAATATGGGGTTTACAAGGCATTGGGCTCTACAAGGTTCTTATCAGT ATCAGATCATTTCACTATGCCTCTCAGACATATCATCCTCAGGCTCATTCACAATGTTTGGCACGTATTCAGGTTCAGGG TCCTGCTCAAGTTCAATAACCGGCTCAGGCACTGCACGAGATTGTTCACGCCTTTTACATTCTGACGTTGTCATACGTTT GCGTACGAGGGCTTGATCCACGGGGGCTTGAAGGGAGCGCTCTAAATGTTTTGTCCTTGTCATATCTGTATCAAAAAATG GGGGATAGTTCAAATAATGTAAGTAATGCACCGTGAAGTGTGAGTGTGACGCCCTTTAAAATGTGTTACTTAACGCATTT AAAGTGCGTCAATTACGCATTTTAAAGTGCA
CDS sequence (LotjaGi2g1v0053900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTATTGGCCCTTAAATTTTGCATATCTCTTGTTCCAAAGTGTGAATGGCTAAACAGAGATAAGGTACAATCAGT AATCGCTTGGGTTTCATTATCAAATGTCAATTATGCCATTAATGGAACTATTAAGCAACAACTACCCCAGGCCTCTTTTG GTATTCTGAAGATAAACAACACTTGCACCCTAGAGCCAAGGAAGGTTTACACTTTGGTTTGGTGTTTTAAAGAGGTGTTC ATGGCTGCATTTCCGATATGTTACAAAACGCGCTACAGGGACCAAAATCTATCAACCCAAAGCGTAATTAGACAGAGTGA CAAGAGATTTATGCTTGACTCGGATAATATGCTAAGGTCCTTCCCTTCAAATATCCTTACAAAATCAAACACACAAGAAA GGAATGCACCTAGGTGCATAGTTCTTGGCAGAGATTCTTTGCATAAGACCACGACAAAAGCTCGTAGTCAAGACAGTAAC TTAAGCTTCTTTCAGGGATGCCATTCAAAGAAAAAAAAACTTTCCACAGTTTGGTGTTCAGGAGAGTCTAGCTCTATTGA GAAGCAACTAAGATCATTAGATTGCTATTTTGGAAAGCTTCAAGATAATGCAAAGTTAAGAACTTTTGATACATCAAACA AGGTGATGCAGCTGGCGCTTCACAGATTCAGATCAAGAAATGAACTGGAGTCTCTTGATGAGTATCTTGGAAAACTAAAT AATGCAGGAATAAATCAAGAGTCTCTTGTGCCATTTTATGTTGAGAATCGCTGTGAAGAAAATTTAGCACCAAAACAATC ACTCAGAAATTATACTGGAAGAACAAACTTTAGGAAACGCAATACTTATGTGGATCTAAGAAGAATAGAAGGTGTAGGTG GTCCAAATTCTGGTATAGACTCACAGCAGCATGATGAAACCTCCAGTCTCTATCTAATTGGCATATTGGCTTCTGTAAAC ATTGCAGTGTTTCTATTTGAAATAGCAAGTCCTGTTAGGAATGCTGATCTCGAGCTGTTTTCGCTTCCTCTACTATATGG AGCAAAGATAAATCATTTGATCATGGTCGGAGAATGGTGGAGGCTTGTAACACCAATGTTTCTGCATGCGGGAATCTTTC ACTTGGCTCTCAGTTGTTGGGCTCTTCTATCATTCGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCATG ATCTACATACTGGGTGGAGTTTCTGGAAACTTGACAAGTTTTATGCATACACCAGATCCAGCTGTTGGTGGGACTGGACC TGTATTTGCAGTAATTGGTGCTTGGCTCATGTATCAAATTCAAAATAGAGATGTTATTGCAAATGATGCTTCAGAGAACC TGTTCCAGAAGGCAATAATAATTACAGCACTTGGCTTCATCTTAAGTAGCCTTGGTCCTATTGATGAGTGGTCACACTTT GGAGCAGCTTTCACAGGCATGGCATATGGGTTTCTAACCAGCCCAGCTCTTCAGTTGGATGATACGTCAGGAACTGGTCG AGAAGAAGGGCTCAAACTTGTTAGAAGAAATGGTGATTCTTGGAAATCGCTGATCATATTCACCATCTTCATTGCTGTTT TAAGCTCTCTCCCTTTCTTTATGGAGCCCCCTCTCAGTGCTGACACCTTAGAATTTATGTAG
Protein sequence (LotjaGi2g1v0053900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHLLALKFCISLVPKCEWLNRDKVQSVIAWVSLSNVNYAINGTIKQQLPQASFGILKINNTCTLEPRKVYTLVWCFKEVF MAAFPICYKTRYRDQNLSTQSVIRQSDKRFMLDSDNMLRSFPSNILTKSNTQERNAPRCIVLGRDSLHKTTTKARSQDSN LSFFQGCHSKKKKLSTVWCSGESSSIEKQLRSLDCYFGKLQDNAKLRTFDTSNKVMQLALHRFRSRNELESLDEYLGKLN NAGINQESLVPFYVENRCEENLAPKQSLRNYTGRTNFRKRNTYVDLRRIEGVGGPNSGIDSQQHDETSSLYLIGILASVN IAVFLFEIASPVRNADLELFSLPLLYGAKINHLIMVGEWWRLVTPMFLHAGIFHLALSCWALLSFGPQVCKGYGSFTFFM IYILGGVSGNLTSFMHTPDPAVGGTGPVFAVIGAWLMYQIQNRDVIANDASENLFQKAIIITALGFILSSLGPIDEWSHF GAAFTGMAYGFLTSPALQLDDTSGTGREEGLKLVRRNGDSWKSLIIFTIFIAVLSSLPFFMEPPLSADTLEFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 309 | 309 | - | – | |
| PANTHER | 81 | 547 | 467 | 1.5E-179 | – | |
| PANTHER | 81 | 547 | 467 | 1.5E-179 | – | |
| Gene3D | 306 | 500 | 195 | 5.6E-35 | ||
| Phobius | 310 | 328 | 19 | - | – | |
| SUPERFAMILY | 313 | 497 | 185 | 1.24E-33 | – | |
| Phobius | 329 | 339 | 11 | - | – | |
| Phobius | 340 | 360 | 21 | - | – | |
| Pfam | 357 | 495 | 139 | 6.9E-30 | ||
| Phobius | 361 | 365 | 5 | - | – | |
| TMHMM | 363 | 385 | 23 | - | – | |
| Phobius | 366 | 383 | 18 | - | – | |
| Phobius | 384 | 394 | 11 | - | – | |
| TMHMM | 392 | 411 | 20 | - | – | |
| Phobius | 395 | 415 | 21 | - | – | |
| Phobius | 416 | 420 | 5 | - | – | |
| Phobius | 421 | 438 | 18 | - | – | |
| TMHMM | 421 | 438 | 18 | - | – | |
| Phobius | 439 | 457 | 19 | - | – | |
| Phobius | 458 | 474 | 17 | - | – | |
| Phobius | 475 | 479 | 5 | - | – | |
| Phobius | 480 | 499 | 20 | - | – | |
| Phobius | 500 | 519 | 20 | - | – | |
| Phobius | 520 | 541 | 22 | - | – | |
| TMHMM | 524 | 541 | 18 | - | – | |
| Phobius | 542 | 553 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0053900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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