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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0057600 |
| Transcript ID | LotjaGi2g1v0057600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT5G16740.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1K3P2|I1K3P2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0057600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:11853170..11856977) extracted from Lotus japonicus Gifu genome v1.2.
GATGTCAATCTCCACATTCCTTCGCATTTCTCCTCTATAATTTGCCACTTACTGCTACAACGCCCTTGTATCTTCTTCTC TTAGTTTATTGTAACTTGATTAGTATGTTGAAATCTTTGTGGAACAGCCTAAGCTTTCAACAGAAATGTCTCCTCCATGA GAAAGAGAATCAAGTTGATAGTGGCGGGTCGGCGCCGGCCGGTGCAAACTTGGAAGTGCAGTTGGCGGAGAATTGCAATA ATTGCGGGGAGGAAAGCAACTTATGCAAGTGTGATCATCATATCAATGTAAAGAGTGTAGCAGCTGGGGGCACCAACTTA GCTGAAGAGCATGACCATGAAGCCAATAGTTCTTTAGCTCATACAGTCATTAATATGGTCGGGACGCTCATAGGTAATGT TTATTTTAAGGAAAATATTCTTCCCTTCCTTAACACATACAATTATTACACTCCGCTCTCCTCTTATTTTTAATTATACT CTTCCCGCCCCTCATAAATAAAATCAGAACGGTTTAATGGTTGTGCATTGTCAGTGTAAAGTGTTTTTACACAGACGTCC AATCATTGTATGCCACGTATTCAAAAGCATATATGTTTCATTTTTTTATAATTAAATTTAAAGTTTATTTTCTAATTTGG CGACCCATCATTGGATGCATGTGTAAAAAATATTTACACCGACGGTGTATTTCCATTAAATTCAAATCAGAATACTTTGT ACTCCAAGTTAAAAATTCTGTTAAACTCCATTAACCATCAGTTAGAATATTTTTTTATGTCTAAAATACCCTTTTACTCC CATCTTGCCATCCATATTTCATCTATTAGATTAAGGATATTTTAATAATTAAAAATAATATAATATATATTTAATTAAAA CAAATTGAAAAATATTTCTAACCGTGTTAAGTTAAATGGATTAAAAGGTATATTTATATTAACAGAGTACAGGAGTGTAA TATTTATGTTTCTCAGGGAGAGGAATGTATTTTATTGTTATATTTTTCTTTTAAGTTAATAAAAATAAGTTACTAAACAT TGAAAAATTAATTGAAGAAGAAAAAGAAGAAGATCTGGACATTACTTTCCATGATCAGCCTTGAGATAGACGATGTAGTA GATGTTGATTGTGGTCTTCTCAGACATTCTGATAGGTTCGCTTGGTCTTGCATGAGTTGACATGAAGCTCTGTCTTCTTC TTCAAATGATCCTGATGATTTGACTCTTTTTACTCAGACTGATTATCTTGATCTATCTCTGTTTGGGTGGACTAGCGGAT TTGACATTTCCTTACTAGTGTAGTTGCCTTGTAGCTCCAATCATCCTTTTCTTTTCTCTGGTCAGACGATCTGACAGGGT TGACTATTTGCTTGTATAGTCTGCCTTGTAGCTATGACTCTTCTTTTCTTTTCATGCTTAGACGATGTGGCATGTTTTGA CTTCTTCCGCCTTTCTCGTCTTCCTTTGATGCTTTTGTCTTTCTCTTCTTTGGTTGAGCGTCTCCTTATGCAGTCTTATG CTTTGAATAAGAGACGAGAAGGTGATTTCCTGAAATACAATTCCTGAAATTTTTATCATTCAAAAGATGATAAATGATAT ATCTAGTGTTTGAACTTAACAATAAGCTCCACCGTGATTTAAGTCACCATCTCTCTTTCACCCTCTCACTCTTTGGGGAA GTGTGATGATTAAAGGTATAAGGGGTTCGGTTGAAGAGGAAGAAAGGAAAGAGATGGATGATAAGTGGTTAAAAAATGGA AGCACAAAATTAGATATAAAAAAGTACATATGGACACCCTTCAGTTGATTAGGCTCACCATGTGAGTAGGTGACTGGACA AAAATTGGGCCATGTAAGCAAAGTGGTGTCAATATTCCAATTTTTTTTTTAATTGAACTAAAAGCTATAAAAAATTGATT AATCAATTTAGCCTCAACCCTAATACATAGACTTGACTTGGAGCATATTAACCTTAATTAATTTGTAAGTTTTATATGTT TAAAAACATGTTATAATACTCATTCCCAAATTCATACATATATAATATTTAACATATTGTATACTATGTAGCAGGTCTCG GACAATTATCAACTCCTTACGCTGTAGAACAAGGAGGTTGGGGTGCATCTGCAATTTTTCTTATAGGACTTGGGGTGATA TGCACTTACACTTCTCATTTACTTGGGAAATGTCTGAAAAAGAATCCCAAGTTAAGAGGCTATGTGGACATTGGGTATCA TGCATTTGGAGCAAAGGGAAGATTCATAGTTGCAACATTCATCTACATGGAGACCTTCATGTCTCTTGTTTCATACACCA TCTCATTGCATGACAACTTAATGACAGTGTTACATCTGAAGCTACATTTGGCTAAATTATCTTCACCACAGCTTCTGACT ATTGGCGCTGTGCTGATTGTTCTGCCTAGTTTGTGGCTCAGAGACCTGTCTTCCATATCTTTCCTTTCAATTCTTGCTGT TCTCATGACTCTAGTCATTTTTGTGTCTGTAGCAGCCACTGGAATTGTTGGAGATGTCAGGGTTAATCATAAAATATCCT TCCTCCACCTCCACAACATTCCATCAATATCTGGCCTTTACATCTTCAGCTATGCAGGACACATTGTTTTCCCTAATTTA CATAAGGCCATGAAAGACCCCTCAAAGTTTACCAAGGTATATATTCATAGACAATATATAGAATGTTTTAATTAGCTTAT AATCTTTTCCAGAATTAATTTCTGACACTCAGAACCTATTCACATCTCAAAATTGATTTTAGCTAGCTTTTGACTCTAGT CATTGTAGCAGGATTTCGAAACATGCTAATAGTGCATGTTTGCAAATCGTTCTACAGCTAATTCTAAAGACGAAACCAAT TCTGTTGAAAAAATTGTGGGTACCTTCAAGCTACTAGAATTGATTGAATAAAGAAAAGTTAACCCAAACATGGAAGAAAA ATCAATGAAAAAATTAACGGGGTGCTTTTATTATTTATTTATCTGTTTTTTGGATTGAGAATTTCAGGCTTCTATTGTGA GCTTCACACTAGTTACAACACTCTACACAATATTGGGGTACATGGGTGCAAAAATGTTTGGACCGGAAGTCAATTCCCAA GTAACTCTCAGCATGCCCCCTAAGCAAATTGTGACAAAAATTGCGTTATGGGCAACCGTTCTGACACCTATGTCCAAATA TGCTCTTGCATTTGCACCATGCGCTATTCAGCTGGAGCATAGACTTCCTAATTCCATGAGTGGCCGGACCAAAATGATAG TTAGGGGCCTCATAGGTTCATCTTTGCTTTTGGTTATACTAGCCTTAGCTCTAACAGTGCCTTATTTTGAGCATGCTCTC AGCCTCACTGGTTCTGTTGTTAGTGTTGCCATTTGTTTGATTTTCCCATGTGCTTTCTACATGAAGATTTTTTGGGGCCA CATAACAAAGCCTCTCTTAATCCTGAACATGTCTATCATCACTTTAGGGTTTCTTCTTGGAGTGATGGGTACCATTTCCA CCACAAAATCACTAGTGAAAATATTTCTAGCTTCTTAATCAAACTTGAAATGATTCAGCATTCTTGTCACCACCTCAACA TATTATATATGCATATAAAGATGGGCATGAAATAAAACAACTTTGGTTGTTTAATTAATGTGATGTATTACCCCATGTAT TTCTGTTAAACAGATAATTTTTAGCACTTGGTTTTTATCATGGTGGAAAAAAGGCACTAAGTGAAAATCACCAGATACAT TTACAAATGTGGATGGATACTGAATTGCTTCCTCGGTCTTAGTCTCTC
CDS sequence (LotjaGi2g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAATCTTTGTGGAACAGCCTAAGCTTTCAACAGAAATGTCTCCTCCATGAGAAAGAGAATCAAGTTGATAGTGG CGGGTCGGCGCCGGCCGGTGCAAACTTGGAAGTGCAGTTGGCGGAGAATTGCAATAATTGCGGGGAGGAAAGCAACTTAT GCAAGTGTGATCATCATATCAATGTAAAGAGTGTAGCAGCTGGGGGCACCAACTTAGCTGAAGAGCATGACCATGAAGCC AATAGTTCTTTAGCTCATACAGTCATTAATATGGTCGGGACGCTCATAGGTCTCGGACAATTATCAACTCCTTACGCTGT AGAACAAGGAGGTTGGGGTGCATCTGCAATTTTTCTTATAGGACTTGGGGTGATATGCACTTACACTTCTCATTTACTTG GGAAATGTCTGAAAAAGAATCCCAAGTTAAGAGGCTATGTGGACATTGGGTATCATGCATTTGGAGCAAAGGGAAGATTC ATAGTTGCAACATTCATCTACATGGAGACCTTCATGTCTCTTGTTTCATACACCATCTCATTGCATGACAACTTAATGAC AGTGTTACATCTGAAGCTACATTTGGCTAAATTATCTTCACCACAGCTTCTGACTATTGGCGCTGTGCTGATTGTTCTGC CTAGTTTGTGGCTCAGAGACCTGTCTTCCATATCTTTCCTTTCAATTCTTGCTGTTCTCATGACTCTAGTCATTTTTGTG TCTGTAGCAGCCACTGGAATTGTTGGAGATGTCAGGGTTAATCATAAAATATCCTTCCTCCACCTCCACAACATTCCATC AATATCTGGCCTTTACATCTTCAGCTATGCAGGACACATTGTTTTCCCTAATTTACATAAGGCCATGAAAGACCCCTCAA AGTTTACCAAGGCTTCTATTGTGAGCTTCACACTAGTTACAACACTCTACACAATATTGGGGTACATGGGTGCAAAAATG TTTGGACCGGAAGTCAATTCCCAAGTAACTCTCAGCATGCCCCCTAAGCAAATTGTGACAAAAATTGCGTTATGGGCAAC CGTTCTGACACCTATGTCCAAATATGCTCTTGCATTTGCACCATGCGCTATTCAGCTGGAGCATAGACTTCCTAATTCCA TGAGTGGCCGGACCAAAATGATAGTTAGGGGCCTCATAGGTTCATCTTTGCTTTTGGTTATACTAGCCTTAGCTCTAACA GTGCCTTATTTTGAGCATGCTCTCAGCCTCACTGGTTCTGTTGTTAGTGTTGCCATTTGTTTGATTTTCCCATGTGCTTT CTACATGAAGATTTTTTGGGGCCACATAACAAAGCCTCTCTTAATCCTGAACATGTCTATCATCACTTTAGGGTTTCTTC TTGGAGTGATGGGTACCATTTCCACCACAAAATCACTAGTGAAAATATTTCTAGCTTCTTAA
Protein sequence (LotjaGi2g1v0057600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKSLWNSLSFQQKCLLHEKENQVDSGGSAPAGANLEVQLAENCNNCGEESNLCKCDHHINVKSVAAGGTNLAEEHDHEA NSSLAHTVINMVGTLIGLGQLSTPYAVEQGGWGASAIFLIGLGVICTYTSHLLGKCLKKNPKLRGYVDIGYHAFGAKGRF IVATFIYMETFMSLVSYTISLHDNLMTVLHLKLHLAKLSSPQLLTIGAVLIVLPSLWLRDLSSISFLSILAVLMTLVIFV SVAATGIVGDVRVNHKISFLHLHNIPSISGLYIFSYAGHIVFPNLHKAMKDPSKFTKASIVSFTLVTTLYTILGYMGAKM FGPEVNSQVTLSMPPKQIVTKIALWATVLTPMSKYALAFAPCAIQLEHRLPNSMSGRTKMIVRGLIGSSLLLVILALALT VPYFEHALSLTGSVVSVAICLIFPCAFYMKIFWGHITKPLLILNMSIITLGFLLGVMGTISTTKSLVKIFLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 111 | 111 | - | – | |
| PANTHER | 32 | 463 | 432 | 2.3E-188 | – | |
| PANTHER | 32 | 463 | 432 | 2.3E-188 | – | |
| Pfam | 81 | 461 | 381 | 4.3E-66 | ||
| Phobius | 112 | 134 | 23 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 135 | 159 | 25 | - | – | |
| Phobius | 160 | 179 | 20 | - | – | |
| TMHMM | 160 | 182 | 23 | - | – | |
| Phobius | 180 | 198 | 19 | - | – | |
| Phobius | 199 | 218 | 20 | - | – | |
| TMHMM | 202 | 219 | 18 | - | – | |
| Phobius | 219 | 224 | 6 | - | – | |
| Phobius | 225 | 248 | 24 | - | – | |
| TMHMM | 226 | 248 | 23 | - | – | |
| Phobius | 249 | 267 | 19 | - | – | |
| TMHMM | 263 | 285 | 23 | - | – | |
| Phobius | 268 | 286 | 19 | - | – | |
| Phobius | 287 | 297 | 11 | - | – | |
| Phobius | 298 | 318 | 21 | - | – | |
| TMHMM | 298 | 317 | 20 | - | – | |
| Phobius | 319 | 337 | 19 | - | – | |
| Phobius | 338 | 360 | 23 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 361 | 380 | 20 | - | – | |
| Phobius | 381 | 404 | 24 | - | – | |
| TMHMM | 385 | 404 | 20 | - | – | |
| Phobius | 405 | 409 | 5 | - | – | |
| Phobius | 410 | 429 | 20 | - | – | |
| TMHMM | 414 | 433 | 20 | - | – | |
| Phobius | 430 | 440 | 11 | - | – | |
| TMHMM | 440 | 462 | 23 | - | – | |
| Phobius | 441 | 460 | 20 | - | – | |
| Phobius | 461 | 473 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0057600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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