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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0058400 |
| Transcript ID | LotjaGi2g1v0058400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G15900.1 TRICHOME BIREFRINGENCE-LIKE 19; Swiss-Prot: sp|Q9LFT0|TBL19_ARATH Protein trichome birefringence-like 19; TrEMBL-Plants: tr|A0A072U692|A0A072U692_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi2g1v0058400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:12192193..12194679) extracted from Lotus japonicus Gifu genome v1.2.
GCTTTTCATTTAACAACAGTACAAATAGTAGTATGGTAAACAAGTTTTGTACATTTTGTTTTTATGCCTTTGTTCAGTCC TCAGTCCTCAATCTATGTAATATCTCATTATCAATAAAGACATTTTAACAAGACAGGGACACAACATGAATTAGAAGGTG ATTTAGGTAAACTTTAGTTTAAAACACTATTGAAACTTAAAAGGCTTATCCAAACAAACATCATAATAAAGTTAAGTTTT ATATAAGCTGTTCAGCGCAAAGCTTTTGATTCAGCCTCAGTTTTTCAGCCATGAAGTTTTCCACTGATGAGGTTCCCAAT GGGAAGTTCTATGCACGTATAAAAACTCCAAAAAGTGTTATGCTGGTACCATTCACTATGCTCCTCCTTATGCTTCCTCT TTCTCTTATGAGAAACTCACATGAATCATCATCTCCAGTGTTATCTTCTGTCAGCAATTTGAACATCACAGAAACTGAAA AAAGATGTGACATCTTTTCTGGGAAATGGATTCCTCACCCTGAAGGACCTTATTACAACAATGAAACTTGCAATTTGATC ATAGACCAGCAAAACTGCATCAAGTTTGGGAGGCCTGATAGAGATTACCTTTATTGGAGGTGGAAGCCAGAGGAATGTGA GCTTCCACTCTTTGATGCAAATCAATTCTTGAATCTTGTCAGTGGAAAGAAGATAGCCTTTGTTGGAGACTCAGTGGGGA GAAACCAGATGAGATCTTTGTTGTGCCTCCTTAATCATGTAAGTGATCATTCATTACTTTGTTTCTTTTGGCATATAAAG AGAAAAGAAACTATAAGTTTCTACCACATGCATGTTAGATATAAAACCAATAATGACATGTTTGAATCAGTTTCTATTTT TTCCCAACAAATTTTAGCACATAATCAATTCTTGCACCCATAGGCCACTCACAAAAACTTCTCTAAAAATTTGATTTTGA GTATAGAATCATTTATAGAAGGACTTTCGAAAACCCTTGTAAGATTTATTCTAAACCAAAAATCAATTCTTGAGCTATGT TTTGTTTTCCGTTAGAAAACTCGTTAACCTTGGATGAAATATTGATATTTGAGAGCCATCTTGGACAATTGATTTCAAAC CCAAAATGAATTTTTGTAAAATCTAGGGATAGTAGCTTGTTTTGATGAACATGATTAATTGTGGGATTTTACAACTAAAT TTTACAACAATACTAACAAAACTCACTTTTTTATAATCATAAATATATCAAAAAATAAATCACTTAATTTCACATGACTT TTACGAAAATCAATTTTGACAAACGCTGATCCAAACATGTGTGACTAGATTATGAGTTTCAGAATTGATTCGAAGAAAAG AAAAATTAATCAAGACACGCTAACAAGTTTTGGTCCAATAACTTTTGCTAATGATAGCCTTTTCATGCTTATGTTACAAG TCCAAATCAGATGAAGATAACAATTCTAAAACATGCTAATGTGGGCATCTTTTCAGGTGTCTCAACCAGAGGACATTTCT CATAGATATTCATCAGACGTGGCATATTTCAAACGCTATTTCTATGCTGATTACAATTTCACCCTTGGAAATTTATGGTC TCCCTATTTTGTGAGAGCCAATGATGCTGACCAAAATGGTCATTCTTATAATAGCATCATGAAGCTGCATCTAGATGAGG TAGATGAAGCTTGGGCAAGTCAAGTGGAAAGTTTTGACATTGTAATAATCTCAGCAGGACACTGGTTCTTTAGACCTGTA TTGTACTATGAAAATAATCAACTTGTTGGATGCAACAAGTGTGGAATGGAAAATGTGACAGATTTTGGTCACTACTATGG ATACAAGAAAGCATTCAGGACTGCATTTAGAACTCTTATAAATCTTAAAAATTATAAAGGGGATACATTTTTTAGGACAT TTTCTCCATCTCACTTTGAGAATGGGGATTGGAACAAGGGAGGGAATTGTGCGAGGACAAGGCCATTCACTAAGGAGGAA GTGAAGCTGGATGGTTATGTTCTTGAAACATATTTGACACAAGTGAATGAATTTAAAGAAGCAGAAAAGGAAGCAAGAAT GAGAGGTTTGAAGTTTTTGATGCTGAATACCACAGAGATCATGCTGATGAGGCCTGATGGACACCCCAATGGCTATGGAC ATTCTATGGATAAAAATGTGACACTAAATGATTGTGTTCACTGGTGCTTGCCTGGTCCTGTTGACACATGGAATGAGTTT TTTCTGTATATGATGAATATAGAAACCCAGACATCTACTGGATCAAAGGTAGAGAGAGTATTCTAGAAGATCAGATTTGA TTTATCATGTTAAACATAGCAAAGATATTGATATTTACTTTTTGGATTTTCAAAGTATAGTGTAATTTTTCTATATTTAC ACATAAAGGGCAGGGGAACCCATGGGGAAGAACTCATTGAATGTATACATCTATTATTGATAATAAACTATGGAAAGGAA TTTGTGG
CDS sequence (LotjaGi2g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTTTCCACTGATGAGGTTCCCAATGGGAAGTTCTATGCACGTATAAAAACTCCAAAAAGTGTTATGCTGGTACC ATTCACTATGCTCCTCCTTATGCTTCCTCTTTCTCTTATGAGAAACTCACATGAATCATCATCTCCAGTGTTATCTTCTG TCAGCAATTTGAACATCACAGAAACTGAAAAAAGATGTGACATCTTTTCTGGGAAATGGATTCCTCACCCTGAAGGACCT TATTACAACAATGAAACTTGCAATTTGATCATAGACCAGCAAAACTGCATCAAGTTTGGGAGGCCTGATAGAGATTACCT TTATTGGAGGTGGAAGCCAGAGGAATGTGAGCTTCCACTCTTTGATGCAAATCAATTCTTGAATCTTGTCAGTGGAAAGA AGATAGCCTTTGTTGGAGACTCAGTGGGGAGAAACCAGATGAGATCTTTGTTGTGCCTCCTTAATCATGTGTCTCAACCA GAGGACATTTCTCATAGATATTCATCAGACGTGGCATATTTCAAACGCTATTTCTATGCTGATTACAATTTCACCCTTGG AAATTTATGGTCTCCCTATTTTGTGAGAGCCAATGATGCTGACCAAAATGGTCATTCTTATAATAGCATCATGAAGCTGC ATCTAGATGAGGTAGATGAAGCTTGGGCAAGTCAAGTGGAAAGTTTTGACATTGTAATAATCTCAGCAGGACACTGGTTC TTTAGACCTGTATTGTACTATGAAAATAATCAACTTGTTGGATGCAACAAGTGTGGAATGGAAAATGTGACAGATTTTGG TCACTACTATGGATACAAGAAAGCATTCAGGACTGCATTTAGAACTCTTATAAATCTTAAAAATTATAAAGGGGATACAT TTTTTAGGACATTTTCTCCATCTCACTTTGAGAATGGGGATTGGAACAAGGGAGGGAATTGTGCGAGGACAAGGCCATTC ACTAAGGAGGAAGTGAAGCTGGATGGTTATGTTCTTGAAACATATTTGACACAAGTGAATGAATTTAAAGAAGCAGAAAA GGAAGCAAGAATGAGAGGTTTGAAGTTTTTGATGCTGAATACCACAGAGATCATGCTGATGAGGCCTGATGGACACCCCA ATGGCTATGGACATTCTATGGATAAAAATGTGACACTAAATGATTGTGTTCACTGGTGCTTGCCTGGTCCTGTTGACACA TGGAATGAGTTTTTTCTGTATATGATGAATATAGAAACCCAGACATCTACTGGATCAAAGGTAGAGAGAGTATTCTAG
Protein sequence (LotjaGi2g1v0058400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFSTDEVPNGKFYARIKTPKSVMLVPFTMLLLMLPLSLMRNSHESSSPVLSSVSNLNITETEKRCDIFSGKWIPHPEGP YYNNETCNLIIDQQNCIKFGRPDRDYLYWRWKPEECELPLFDANQFLNLVSGKKIAFVGDSVGRNQMRSLLCLLNHVSQP EDISHRYSSDVAYFKRYFYADYNFTLGNLWSPYFVRANDADQNGHSYNSIMKLHLDEVDEAWASQVESFDIVIISAGHWF FRPVLYYENNQLVGCNKCGMENVTDFGHYYGYKKAFRTAFRTLINLKNYKGDTFFRTFSPSHFENGDWNKGGNCARTRPF TKEEVKLDGYVLETYLTQVNEFKEAEKEARMRGLKFLMLNTTEIMLMRPDGHPNGYGHSMDKNVTLNDCVHWCLPGPVDT WNEFFLYMMNIETQTSTGSKVERVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 11 | 414 | 404 | 9.8E-194 | – | |
| PANTHER | 11 | 414 | 404 | 9.8E-194 | ||
| Phobius | 22 | 40 | 19 | - | – | |
| Phobius | 41 | 425 | 385 | - | – | |
| Pfam | 65 | 117 | 53 | 2.7E-21 | ||
| Pfam | 118 | 407 | 290 | 8.4E-91 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0058400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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