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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0061000 |
| Transcript ID | LotjaGi2g1v0061000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy-metal-associated domain-containing family protein; TAIR: AT1G22990.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q93VP2|HIP22_ARATH Heavy metal-associated isoprenylated plant protein 22; TrEMBL-Plants: tr|I3SH57|I3SH57_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0061000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:13010092..13012365) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTTGGTGCTCCAAATTTTTGTTCTGGAAACTCTTCTATTCCCTCTTCTCTCTTCCTTTCTCTCTCTCTCTCTCTAGC TATACTCTGTTCTAGTGTTCTGTTTCTATAACAGAAAAAATGGGTGTTCTTGATTATCTTTCAGACTATTTCTCTGTGTC CCCCTCCACTGGAAAGAAGCGTAAACCAATGCAGGTTTTCGTCTCTTTTTAGTCTTTTTTTGCTATTCCATTACCATTTT CTGTATGTGTTATAACTTATAATTACTTATAGTTATATGTCTACACTCTACATGGTGTGTATGTCTAGTCTCAAGCAAGT ACTAATTTTTTTGCGTCTTCCTTTCTCTTACAGACAGTTGAAATCAAAGTGAAAATGGACTGTGATGGATGTGAAAGAAG AGTTAGGAATTCGGTTGCCCACATGAAAGGTTAAAATCTCTCTCTTTTCTTACTCACTCATATTTCTGTCTCCGGAAGCT CCTCTAACATTACACTGTGTCTGTATGTTGGGAAATTTTTCTACAAGCCTGTTGGGAAATTCGTTTGAAAATCACCATGG AACTAAAATCATACTCAACAAAATTGTAAAACTTGGGAATTAAATTTGTTTTTGTGCATCAAAATTTTGTCTTTACTATT ATTTTCGCACAAATTTTCAAACATGCACTACAGTTGATTCTGGAGTCAGAATCTATTATGTAAAGAAATTTCAAAATATT AGAATTGATTACCATAAAAGAAACTGATACAAAACATGCTATCAGACTACTGGAATTGTTACTCCACCTCTGACTCTAAG CTATTTATTGCCGTAGGTAGTAGCTCAAACTTGATGTTTCATTCTTTTCCACATGTAGTATTTTCTTGTGGTTTTTTTCA AAGCTATCTGAACATTCTTTTGAAACATTCTTTTATTGCATAATTCTGTGAGGTAGGACAGTTAATATGTCCACAAAACA TGAGCGAGGTAATGAGAAATTAAAAGAAGTAGATAGTGGTGGTGCTAAAGATGCAAACTGCATTTATGCATGACTTGTTT TTCATACTGGCAAATACACCTAACCTAAAACATTACCAAGGAACTGACATAATATTACACTTTTATTGGTTAAACAACAT TATAGGGTCACTGCAATTGTCCTATCAAGTTTAATGTGTCTTGTAAGAAAAGAGTAAAAAAAAAAAATTCAGGTCTTTTC TTGACTCCATATTATTCATGGGCCTCAAAGAGTCATAATAAATGAAACATATAGGTAAACCTAACTATGATTGCTCTGCT AGAGTCATAAAGTTGTGATCCACTACAATTCACAAATCAATTGTGAATTTGAGAAGCTACACACTAAGTTTATCTCCAAA ATCGTTGAGATGTCCCACATTAAAAATACTCACGTCAAAGTTAGTTTTTGAAGTAGAGTTATGTCTCTCAAATACTAATA CGGTATCATAGTCTATCATAAATCGTTTGAGAGATCACCAGTATATGAATCACCGGTATATGTTGATTCTTATAACCCCA CGTTTCAGATGTTTAGCCTTGACGTGAGAGAGTGTGTTGAGATGTCGCACATTTACTAAAGATATGACCAAGATAACCAT TATATTAGAAAAGACAATCCTTAAATCTAATATAGCTTTTGAGGTAAAGTTATACCTTATACATTCTAATAACAACTGAT TCTGCCATAAAAATCAATTTTGTATTTGGATTTTGAAACATGCCATTAGTGTTCTTGATTGGAAAATTTAGAAAGTTTAC TGAATCATCTTAGAACAATTAATGCAGGTGTGAGATCAGTGGAGATCAATAGAAAGCAAAGCAAGGTAACTGTTAGTGGT TACGTGGACCGAAACAGGGTGTTAAAGAAAGTGCAGAGCACAGGAAAGAGAGCAGAGTTTTGGCCATACATTCCATACAA CTTAGTGGCTTATCCTTATGTAGCACAAGTATATGACAAGAAGGCACCAGCTGGTTATGTGAAGAACTCTGTCCAAGCAC TTCCAAGCCCAAATGCTCTGGATGACAAGCTCACCAATCTCTTCAGTGATGAAAACCCCAATGCATGTTCTATCATGTAA TAAGCCAATTATAGACTATACAACATGGGCTTGCAAGTTAGATGATATATGTGATGTCCATGGTTCTTGCTCTGATCATG GATACAATTTTGGAAACTACTTTAATACCAGGACTTTGAGACTGTTTTGTAACAGCACCCTTATGTCTAACTTATTTTTT CCCAAATCAATTATGCGACTCAAAAGCTATTCAC
CDS sequence (LotjaGi2g1v0061000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTTCTTGATTATCTTTCAGACTATTTCTCTGTGTCCCCCTCCACTGGAAAGAAGCGTAAACCAATGCAGACAGT TGAAATCAAAGTGAAAATGGACTGTGATGGATGTGAAAGAAGAGTTAGGAATTCGGTTGCCCACATGAAAGGTGTGAGAT CAGTGGAGATCAATAGAAAGCAAAGCAAGGTAACTGTTAGTGGTTACGTGGACCGAAACAGGGTGTTAAAGAAAGTGCAG AGCACAGGAAAGAGAGCAGAGTTTTGGCCATACATTCCATACAACTTAGTGGCTTATCCTTATGTAGCACAAGTATATGA CAAGAAGGCACCAGCTGGTTATGTGAAGAACTCTGTCCAAGCACTTCCAAGCCCAAATGCTCTGGATGACAAGCTCACCA ATCTCTTCAGTGATGAAAACCCCAATGCATGTTCTATCATGTAA
Protein sequence (LotjaGi2g1v0061000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVLDYLSDYFSVSPSTGKKRKPMQTVEIKVKMDCDGCERRVRNSVAHMKGVRSVEINRKQSKVTVSGYVDRNRVLKKVQ STGKRAEFWPYIPYNLVAYPYVAQVYDKKAPAGYVKNSVQALPSPNALDDKLTNLFSDENPNACSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 147 | 147 | 1.1E-83 | – | |
| PANTHER | 1 | 147 | 147 | 1.1E-83 | – | |
| Gene3D | 13 | 90 | 78 | 5.9E-18 | – | |
| SUPERFAMILY | 23 | 90 | 68 | 1.44E-16 | ||
| CDD | 28 | 87 | 60 | 2.51304E-13 | ||
| Pfam | 30 | 84 | 55 | 1.7E-13 | ||
| ProSiteProfiles | 33 | 88 | 56 | 11.061 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi2g1v0061000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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