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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0065100 |
| Transcript ID | LotjaGi2g1v0065100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlororespiratory reduction 3; TAIR: AT2G01590.1 chlororespiratory reduction 3; Swiss-Prot: sp|Q9ZVE7|CRR3_ARATH Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic; TrEMBL-Plants: tr|I1KKS8|I1KKS8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0065100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:15185954..15190248) extracted from Lotus japonicus Gifu genome v1.2.
TAGTGAGTTGCAGATATCTGGTGGTGTGATCTTATCATCTGCATGAAGCGTTAAACACAGTCATTGGAGCCACTCACACA AAACTCACTCGCCATGTATTGCTTATCAATAAAGAAACCCATTGTTGCCAGTTCCACTCTTCCCCCTAAACCCGATTCTT CTTCTTCTCCTCCGCAACAAATCAACCCCAATCCCCCAAAACCACCTTCTTCCGCCGCCGGAAAACCCCCAATTTCCTCT TTACCGCGAAACAGGCTCCGCCGTCGACTGCCACAACCCTCCGTCATCCGAATGGAACGCATCGTCGGCACCGGAAGCTT CCGAGACGGCGAACCCGAGCCCAGGCACACTCTTCGTTCTCTGCTTCCTCCCTTTAACATTATTGATTAATTATGTAAAA TATATGTTAATGATTGTGTTAGTAAAAATGAGTTGCTAATCCAAACTGGAATTCCAAGTGCTCATGTTCTATAGTGAAGG ATTTAGCTTCTGTAAAGTGTAAAGTGAAGAGTGAAGTTTGGAATTATAACTGTTGATAAGAAAATCCATGGTTGAGATTT TCATTATATTGTTATATGTATGTGCACATGCATTGTTTCACAATCACAAACTATTTTCTAATGAATAGTTATCGATGCAC GATATCCGCTAAAGTCATTGTATTTTATCTTCTAAAGTGCACTGGAGTCGGATCTCTAATTGGAAAGGTATTATTTTCAT TAATTTATCCCTGGAGTTTGGCCAGAAAGTAAATCTAAGTGCTCTATAGGGAAGGACTAAGCTCCTCTAGAGTGAGGAGA GCACTCGGAAGTCGGAAGAATGAAGTGTTGAATCATAAAGTGTTGATCAGAAAATCATGGTTGAAACTTGAGATTTCAAT AAGTGCATAAATTGTCATATACGCATATGTATTGCATCATAAACTATTTTCCAATCAACAGCTATCATTGCACTTTATCC TCTAAAGTAATGTTCGGCAGCCAAATCTGTAATTGAAAAAAGTATCATTTTCATTGGATTCTTATTAGTATTTTCCTTGC TAGAAATCATGTTAAGAGTTAATTGGAGTTAGTTGAAAATCTAACTAGGTTCAGTTATGGTTGTGATAGGAAGGTTAGGT CCAACTATATGTAGTTGGTACTTGGTATCCCCTGTATACTGTAATTCAATTGGTTTAGAGACACTTAATAAACATTTAGA TTGGCTACCTTTCTATTCTCCCTCTATTTTTCTTAAGACTCTCTTACACTTTCTTGGTTTAACCACTATCAGATTTGAAT GCGTTTATAATCAATTTCATTGAAATGCACCATTTTGATTCCAATTTTTATGTTTTCATTTTTTAACCTTTTTGGCTTTT AATAATGAACAGAGATTCAGACGTAAGGAAGACTATTTTTGACTTGTTCTTGGGGCAAGCATTTGAAGGGCCGGTTGAGA AGAAGCTGAGAGAAACAGGAGAGTGGGTGGCTGCCAATAGCGAGGCCAGATTGCGTTCCGCTGGTAGTTATTTTCCTTAA TATTTGTCCCTTTAGCTAGAATTGTACCCTTTTCAACACCCTTGCTGTCATAAATTATAGCGACACATTCTCTTATCTTA TTCCTTTTTAACACCACATTATATTGTTGAAGAAAGTTTACGACTCCCAGAAATTAGAGTAGATCTTACCTGAGACTAAC GTGATTTAGTAGGACCCTCATAATAAAAAAATTGTTGAATAGAGTGTGTTAGAGTTTTGTTTGTAATGTTCCTTTTTCTG TTATTATATATTTCTTTTTGTTTAGGCTTTTGTCTGTGATTGAAAGTTATGTCATGTGCTGGGATATATATTGGTTATTT TATTGTTTTGATATGAAAAAATGGCATGTAAATTTTTTGTTGAATTAATTTTGTGTAATGGTAGAAGAATTTCTCATGTT ACTGAATACTGGCTAAAACACACTGGACTGTAATAGGGTAAGACTGCCCATAACCAAAGTGTCTTGTACAAGAGGGACTT AACAGTTAGAATTAACAGAATGGAACTTAAATTCTTATAGTAACTCCCTATTGGACCAGAATAGAAGTTAATTGTAACTG CCAATGTAGATATATATTGAGTAGTATAAGAAAGAAGAGGCAGATTTGGCTTTGTATAGTTTCGTTTGGGAGAGGAACTG AGCTTCTCTAATTACTCAGTACTTTTAGAATTTGCATTGTTCTCTGAAACCTACAGTGTGTTTAATTAATATGTGTTGTT TCTGTAATAATAAATGAATTCTTTCTCTTAGTTCTATTTACCAGTTAAGTCTGGCTACTTATGAATTATGATTATGAATT AGTATTGAAAATATTGAAGATGTTTTATGAAGTTCCAAGGAGTGTGTTGAAAAGAGCGAGTTATGGAATTTGTTGCTGAC AATTTCTTCTTCTGCGACTTTGACTTGTCTTTGTTGGGACTTTTGTCTTGGTGACCGCCAATGGAAAGTGTTTTACATTT TTTATTGTTTGATGTGAAATGATGACGTGTCATTTTTTGGTGAATTAGTTTAAGTATGTTTCTGGAAGAATTTCTCAACT TACTGTCCGAATCACTTAGGCTGCTTCTGAATTTATAGTTGAAGTTTTCAAGATTTTGGTTGAAGTAGTTTGTTTAGGTG CTTGCTATGAATTTCAAAAAATTGAGCCTGCTCAAGGCTCTGTACAGCTTGAGGAATTGTGAGTTGCCTCTTGAGGAAGT TCAGGGACTAGCTGGAATTCTGGAGCTTTTACTGTTTACCTTTTTCTTTTGTGGATTATCAGGTTCAGGTCTGCCTCACT GCTTTTTGTAGTGTTATTTTTTCAAAAGGCCTTCAACTAACCATCACTTACAATGAAGATACTTGACATTAATTTTCAGC AAAAAGATCCTGTTATGAGGTTTAGACTTTATACGATAACTTGGGTACAAATTGCTTGTTAACATTAAATTGTATGGTGA GACTTGTATGTTAACATTTGTGCAACCATAGTCTTCCATCAATTATAATATTGTTAGGTGTCTTTCCTTGCCACGATGGA ATGAAGATATTCCAAATAACAATGTATTTTTATGATCCAATTCTTTTTTCTGCCTTGAAACATGAACTCCATTCAGAACT GCCGGGGATTTAGTTGCTAAGGGACACTTACCAATGACAGTCTCAGTTAGTAGTGTTTTCTTTTTTTTGGAATAGTTGGA AATGGTTGGACTGGTTTGTTGGGACCTAAGTTTCTATTTCCTATTCGTGAGCAATAAGAAACTTCTATCTCTGCTTCCAG GATCACATTAATTCTGGGTTTAGGTTTCTATTAGTGTAATTTTTCTACTGATACTACCAGTTCTAATATCAGTAGTTATT TCCTTTATGGGTTTAGGATTCTATTCTTCTATCCTAACAACTAACCAACTAAAGTGGGTTACAATTAGTTTTTTCCTTTA CTCTGTTTTCACCCAACATGCACTTGTTTAATGAGAGTTTTAAGCATATGGCTATCAAATACCTTACAGGTTATTTAAAT TAACCTATTCTTTCATTTACTATTGATCTTTGAAACCCAATGTGTCTAGCCCTCGTGTTATAGTTTTCTATTTCTAGGTT TTTAACCATTTTAAAATAGTCTCAAATATGAAATAGTTGTTGATAATTCTTTTCTTTCTCTCTTATTTATTTATTAATTT AAATTGTTGCAGGAAAAGGGACTCTAATGTTCATGTTTGTGTGGATGCTACCAATTTGGGCTATATTACTCATATTAGCT ACTGGAACCATCAAGTTACCATTCAGTAGCCCTTTTCTTGATGAGATCCTCTTGTGAGCATAGACCAGCTGCTTTTTGTA GATTCAGTGGTAGTAAATTACTTAAAAGTTCAATGGAGCACTAATATTCCATATAATTGTATTTAGTAGTTATAGCAATC TCACATATATTCCGAAAGCCCATTTTTATAATGCCCAGCATCAATTATATGTGTACATATCCTACATGGATGTTTTCACT TACATCCTTATTAAGCTATAGTTGTTGATAATCTGCTGCTGGCTAGGAATCTATCTTCAGGCTGCACTGTTCTAGTTGAT ATTTTCTTAATTGTAGTTATCGCACTGTGAGATGCAAAGTTTGAATATGCAAGCTGAAATTGAATGAGAAATATGAACAG CAAACTGCATTTCATTAGTAAATTTATTTATAATTTTTCTGATGTTTTGTAACATATGTGTGTATTAGAAAACCCTCATA GGTGATCAATGTAATTTTTCAAGAATCAAGCTTTGCAGGGAAATAGTAGAAAAAA
CDS sequence (LotjaGi2g1v0065100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATTGCTTATCAATAAAGAAACCCATTGTTGCCAGTTCCACTCTTCCCCCTAAACCCGATTCTTCTTCTTCTCCTCC GCAACAAATCAACCCCAATCCCCCAAAACCACCTTCTTCCGCCGCCGGAAAACCCCCAATTTCCTCTTTACCGCGAAACA GGCTCCGCCGTCGACTGCCACAACCCTCCGTCATCCGAATGGAACGCATCGTCGGCACCGGAAGCTTCCGAGACGGCGAA CCCGAGCCCAGAGATTCAGACGTAAGGAAGACTATTTTTGACTTGTTCTTGGGGCAAGCATTTGAAGGGCCGGTTGAGAA GAAGCTGAGAGAAACAGGAGAGTGGGTGGCTGCCAATAGCGAGGCCAGATTGCGTTCCGCTGGAAAAGGGACTCTAATGT TCATGTTTGTGTGGATGCTACCAATTTGGGCTATATTACTCATATTAGCTACTGGAACCATCAAGTTACCATTCAGTAGC CCTTTTCTTGATGAGATCCTCTTGTGA
Protein sequence (LotjaGi2g1v0065100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYCLSIKKPIVASSTLPPKPDSSSSPPQQINPNPPKPPSSAAGKPPISSLPRNRLRRRLPQPSVIRMERIVGTGSFRDGE PEPRDSDVRKTIFDLFLGQAFEGPVEKKLRETGEWVAANSEARLRSAGKGTLMFMFVWMLPIWAILLILATGTIKLPFSS PFLDEILL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 131 | 131 | - | – | |
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 3 | 167 | 165 | 1.2E-46 | ||
| MobiDBLite | 20 | 44 | 25 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 132 | 154 | 23 | - | – | |
| Phobius | 155 | 168 | 14 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosynthetic electron transport in photosystem I | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. | ||
| Cellular component | NAD(P)H dehydrogenase complex (plastoquinone) | Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool. |
Expression pattern of LotjaGi2g1v0065100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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