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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0066500 |
| Transcript ID | LotjaGi2g1v0066500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain; TAIR: AT1G23220.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm; TrEMBL-Plants: tr|A0A0L9T8D0|A0A0L9T8D0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0066500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:15616063..15620747) extracted from Lotus japonicus Gifu genome v1.2.
GAGTTGCCACTGCTCTAACCAGATTGGTATTCACAATCTGACTCTAACAAGCAAGAGAGGAAAAGGGTTGGTTGGAGAGT GATGAGAGAGTGAGTGAGTTTAAGCACACATGGAAAGAGGAGCAGAGAAGGAGTTAGATAGAAGGAGCAAGTTTCTACAC AGTTTGATACAGAACAAGAAGAAAACCAACACAGAACAACATGATGATGGTGATGATAGCACTAGCAGCAGCCTCAACAG GAGCAACGTTCATGTCAGAGCTTGTGATATGCCTCTCCCTTTGCAGAATCATGCTTTCCAATGCGCGCGTCAACACCTCG ATTCTATGCCTGCCAAGAAGCTTGGCAGTAAACTTCTGGCACTGGCACTTAAGAAGGTTCACTTTTTTTTTCTAGGAAAT TTTGATTTTTCCAAATTCTGTTTCTAGGTTCTGATTCTTTGATGCATGTTGATTTGGAAACTTTTGGTGTTATGGAAAAT GGTTAGATGTTGGAACTGGTTCTGTTTTGATTGGATATAAAATTAGTGTCTTTTTGTTGTTTGTTTATTTGTTTCTGTTT TGATGTTCAATCTTGCCTCTTTTACATGTCTAGCACAAGTTTCATAGTTAAACTAAACAAAAAAACTAGCTTAGTCAGTG GCTAACCAACTTTATGTGCAAATTTTGATCTTGGGTGTTGATATCAGGTCAATTGATGTGTCTGATTCCTTTTTGTTTCA GTCAGTTAGCTAGAACTAAGCTTGTTTCTATCAGGTGATTATTCATTGTGTATATATTTTTAGGATAAAGATATTCTCAA ATGATGTCTCATTCCTTATCCCGCCAATGGGATTGTGTCATGTGATGTCAATCAAAAACCACTCATGTGAGGTTATAAAT GTCATGTCCATGTATTTTTCAATAATTGACATGTCATAATTTCATCGGTTGGAACAGGAAATGAGACACCATTTTGTGAC AGAGGTTCTTGATCCCTATTTTTACCATGATTTTGAATGCCGATAGTATCTTTCAAGCACACATGCTCTAAATGTTTGTT TTATTGAGTGGACATCTTTTCCTAATATGTGCAATTCCTTTGTAAATGTTCTTGTGGTGTTTAGAATAGTGTTTTTTTAT TTCTTGATTCTTAGAATCTTAGTTCATCAAATTTCCAATTGACTGTGGTACTTTGCCAAACAGTGGTTTTTCAAAACGTT TTAAGTTCAGAGAGGTTTTTTTTTTGGTCCAAATTGTAGACTTATGGTTGAACTCTTCATTGTGATCATAAAAGTTACAA CTTTACAAATTCTTTGTGACTTTCTGTTCTATGTTAACCACAAACCACTTTAACTTCAAATCCTCTTGGAGAAGTCTCTG AACATATATTCATGCTTAAAAGGCTTTATGGTAGGTTCCATGGAGTTAGTTATCTTTTGGTTCTGTCTCACCTTCCTTAT AAGGTACACTGATAACACACATATTCGCAGCTTATAAGACTCCCCCACAGGAATTTTCTGGTATATAACTATATATGATT ACTTATACTAGAAATTTAAGTTCTCTTTTCCATCTGAATCTCAATGATCTGATTTGAGTTCTTTTAATATAGGTATGCTG CTGGTAAATAGTGTATTAGGATTCCAGAACTGTTTCAAAGTTCTTCAAACCTGTTTCTTTTGTGTTTTCTTTTCCCCTTT CATTGTCAGTATTTCTTACTCTCCTTTCCTGATCCTTGCATTATTAATTAGACTTCCTCCAATCATAATTTTCTCTTTTC TTCATTTCCCAAAATATCTTTCCTCTTCATACTTATAATAGGTACCTGGGTGGTCAACTTGTAAATGTCATGGATTCATT ATGTATAGGATGTCCTCCCTAGGCCTCCATACAGAGAAAGTTCCTTGGCTTGGTGCTAGCCACCTGACCACCTCTTATTA ATGACCCCAAGCAAGTAGACAAGTTGGATAGTGCAAAAGTATCCAAACAGGACCGATCTTGTACTCTTTGGAAAGATATA TGTTTGAATATATTGATAGGAAAAATGATTGTATAGGGTAATGTTGTGAAATTCAATTATGAAATTCCATAATTGGTCAT TTCCGCTGCAAAAGCGAATTGATTCTAAAACTTTCAAAACGTGCCACCAAATTTTTTATACTATACTTCAAAAAAAAAAA AATCATACTAGCTACTACTGTACTGAAGGTTGTCAGACTCGTGAGTCTAAACAAACTCGTTTTGGGTAGGTAGACTCGAC TCGTAGACTCGACAAGACTCGAGTCTACCAAACCTTATAAGCAAACCAATATATCGTGGGAGTGATAGAAAATAGGTAAC ATCCATCTTGTCAAATCATGGTACTAATATACACATACTATAATGGCAAGGTATGGACATTCTCAGAGCTAGAAAGGGTA GGATATTGCCTCAAGGAATGGATTGTTTTACACAAATTTTAGGGAGTTGCAAACAGAGAAAGGATACCATGCAATACTTG AATTTAGGGTGAATCACAAAGATTAAAAAAGACAGTAGAGTCCAAACAATCAAGTGATACTTGAGCAATTTTATTTAGAA GAATCAACTTCAACAAAGTGCCCTTGCTGAAATGGTGGGAAGACTTTTTTCTTTTTTGGAAGATTTAAGATCAGGTATAG TATAGGTAATTATGCTTACACTATGAAGCCGAAAAGTGAACAAACAATTCAGAGACGCGAGAGAGGAGAGGAACGCGAGA AAGAAATTTGAATTTAGGTTTAGTTTTGGGGATTTTTAACTTTAAAAAAAAAAAAAAAACCTTGACTCAGTGACTCGGTC GAGTAAGACCGAGTCATATCGAGTCTGGCAGCGAGTCGACTCGTTTTTCCTAACTCGCAAGTCTACCGAGTCAGCGAGTT AACTCGCGAGTCTAACAACATTGCCTGTACTACACTAAGATAATTGACTGTACTACACTAAGATAAACATGAAAGCAGAA CTTGGAGTCTTGGATCAAAAGTGATAGACTCAAATTGCAATACCTATTTGTTTCAGATTCAGTCACGCACATGCTTTATG CATGATGGTGTGAAATCATTGATGAGGAGCATAGGATTTGGTGGTTTATATAAAATGATGAATATGGGGTAAGGGTAACC ATCCTTATGAGTTTGGTACCTTTGTGGTCCCCTTAAGGTGGCAGCACTTTTTATGGCAACTCTCTATCTGAGCATGTTGG AATTAGGAAATCTGACAACTATGTTTATTAGGTATGTTGGTTGTAAAAATTTAATACTCCCTCCCTCCGTTACTATTTAA CTGTTCACTATGGGTAGAGGCACACATATTAAGGGTGTAATTAATTTTGTTAATTTTTAGAAAAATTGAGGATTGTTTTC CTAATTTACCCTTTAAAGTGTGTGTTATCTCTCCTCATTTATTGTTCTGTTAAGGGCATTATATGTAAAAACATCATTTA ATGCTCTCTTGAAATGTTAAGTGAACAGTTAAATAAAAACAAAAAAATTTCTTCAAGGTTGACAGTTAAATAGGAACGGA GGGAGTAAATCGTGAGTTGATCTTTCACCAACAAAAAGGTGATTTAGTAGGTCACTTTTATGCTCAAAATGTTACTTGGT CCCTTATTTTATAGACAGAGCTTTCTTTGTTGGCAGATGATATGAAAGCTATAATTTCAGGATTCCTACTGCACTAACTG CAAGCATAACTTGTTTGTCTTTTATAAAATGTATATTTGGGATATTTTAATGAATGATGGTATCTTTGGGACAAGTATGG CTTGTGCAAGATTCTTGGTTGGTTCTTGCTCCATCTATTTCCCTCACAGTATGAGCATATTTTTGTTTTCATTAGAGTTG AGCTTTTTAAAAAGGGCTCTTCTTATATAAAAAAGAAAAATTGTTACTCAGTGGTTCAAAAGATCTTTGTAGACACCAGT GAGAAATGTTGATAACATAGTTCTTAATATTGTGAAAGAGGGGTAGAGGGGGGTTAAAATGGATGTTGAAAGATATCATT AAAAGAAACCTCATGGTTATTAATATCCACAAAATTTGGTTCACTTAGTGGAATAGGACTTTTGTTGTACTCACTTGATG ACTTGTAGGTAGATTTCATACTGATATTACTTGAAATGTTTAGGATTATTGTTGGCTATTGTCTTTGTTCTCTTTTTTCC CTTCAAAAGAATGATTTATTGTGCGGAATTCTGCAAAATAAATAAATAAAAAGAAAAACATCTAAGTACCACACTATTAT ATTTTTATTGGAGGGACATGGAAGGAGACTGGAAAGTTATACATACTGATTTCAAAATGCTAATTTTTAGATGGAAAGTG ACTTTAGGGAATATTTTTCCCGTTGTTTTCTAAATTTTGTTACATGGTATGAACTACTTGGATGGCTAATTAACAATAGA AACTTGTTGGTTTTACAGGAATTTGATTCTTCATATGGTCCTGCTTGGCACTGCATTGTGGGTACTAGCTTTGGTTCCTA TGTCACACATTCTGTTGGTGGGTTTTTGTACTTTTCCATTGATAAGGTTTTTATCCTTCTCTTCAAGACAGCTGTTCAAC CATTGAACCATTGATAACTTCCACAGTTATGAGTTATGATGCCTCCTTGGGAAATTAAATTTTGAAATTTCATATTAGCT GATATGTTGTGAAGTTATAAATTGAAACATTTAAAGACACTTGTA
CDS sequence (LotjaGi2g1v0066500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAGAGGAGCAGAGAAGGAGTTAGATAGAAGGAGCAAGTTTCTACACAGTTTGATACAGAACAAGAAGAAAACCAA CACAGAACAACATGATGATGGTGATGATAGCACTAGCAGCAGCCTCAACAGGAGCAACGTTCATGTCAGAGCTTGTGATA TGCCTCTCCCTTTGCAGAATCATGCTTTCCAATGCGCGCGTCAACACCTCGATTCTATGCCTGCCAAGAAGCTTGGCAGT AAACTTCTGGCACTGGCACTTAAGAAGGAATTTGATTCTTCATATGGTCCTGCTTGGCACTGCATTGTGGGTACTAGCTT TGGTTCCTATGTCACACATTCTGTTGGTGGGTTTTTGTACTTTTCCATTGATAAGGTTTTTATCCTTCTCTTCAAGACAG CTGTTCAACCATTGAACCATTGA
Protein sequence (LotjaGi2g1v0066500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERGAEKELDRRSKFLHSLIQNKKKTNTEQHDDGDDSTSSSLNRSNVHVRACDMPLPLQNHAFQCARQHLDSMPAKKLGS KLLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSVGGFLYFSIDKVFILLFKTAVQPLNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 140 | 137 | 8.5E-71 | – | |
| PANTHER | 4 | 140 | 137 | 8.5E-71 | ||
| MobiDBLite | 21 | 42 | 22 | - | – | |
| MobiDBLite | 24 | 38 | 15 | - | – | |
| SMART | 42 | 133 | 92 | 9.0E-37 | ||
| Gene3D | 42 | 134 | 93 | 3.9E-31 | ||
| SUPERFAMILY | 45 | 133 | 89 | 3.66E-27 | ||
| Pfam | 47 | 133 | 87 | 2.0E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi2g1v0066500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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