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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0070000 |
| Transcript ID | LotjaGi2g1v0070000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein VAR3, chloroplastic; TAIR: AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein; Swiss-Prot: sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplastic; TrEMBL-Plants: tr|A0A072VGP2|A0A072VGP2_MEDTR Zinc finger (Ran-binding) family protein; Found in the gene: LotjaGi2g1v0070000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:17027986..17033117) extracted from Lotus japonicus Gifu genome v1.2.
AAATTATACAACACAGTTTCCACTCTTCCAGCAATATTTAAATTGAATTGATACGGGTGGTTCCGGGTCAAGTAGTGGAA CTAAACTCAAACAAACAGGACCGAACGTGGAACACTGAATGAAACGCAATATGATCCGAAACCTATTGAAACATGGTCAC CACCCACGTTGGGCTCGCGCGTTTCTCAGCTCCTCCCCACTCTCTCACAGCGTGGCCAGTCCAGCTTCGAAGCTAAACGA GGTTGAAGAAGAATGGAGATGGAAGAGGGAAGAATCAGAACCCGCGGTTCAGGTCTCGCATCCTTGGCCCGAATGGGTCG GTTTGATGGAGTGCTTGCTCAAGAATGGATACTTCCATGCTGAAGGAAACCCCTTCAAGAATGCTGATATAGGAGCCAAA GAGGCCAATGTTATTAGAACTGCGTGCTTGAATTTTGGGAGAGACCACTTTGATCTTGTAAGGTAACAAAAAAATAAAAT TTGAAGTGAAAAATTATCTGGGGTTTTGTTATTTTGAGGTTTTAATTGTCTAGTTATTGGTTTGTTGTGTTTGCAAAAGG CTTTGCTAAGATATGTGGGCAAGGTGTTTGTTTTAGCTTAGAAAATGAAAAATGATAATGATAAAAAAGGTTCTTTTTGC TGGTTGCATTGTATAACATGATATGGGGTTTTGTAATGTTGGAGTCATTGATTTGGAGAGAGATTTATAACTTCATCCCA GAGTTCAACTTGTGAGGATTACTGTTAAGAAATAAAAATCTGGGGTTTTGCTTTAATTTTGGGGTTTTTGTTGTTTAATT TTTTGTCTTTTTGTGTTTGCAAAGAGGCGTGCTTGGCTGTGAATATGGTGTCTAGGGTGTGCATTGTGCAGGTAAGGTGT TTGAGTTTACGACTATATGACAGTGGAATGGTTGTTTGAATTAACAAACTACCATGGAATGGAGTAACGGACTAAAAGAA CTGTCGTGACGAAGGAAATCAAATTATACTGATATTCGTAGAATGAATTGGACTCTTGAAATTAAGATAGAATTATGGAA TTAGAGGAATTCTAGAGTGGGAAGGCAAAGAAGAATAATAAATGTAGGGAGTAAAGGAAGGTTTATAAAGAGATCCAATT CTCAGTGTTTTGCCTAGCCTCCTTTAACCCCTTCTATTCACACCTTAAATCTGCATAATCAGGAGCCCTCATTCTGGATT TTTCAGCTGTCAAAAACTGATCTTTGTCGCCAATGCTGATCTCACCAGCTATAACTGAGTTATCTGGCTGAATAATGTAG TATGCGTAATAAACAGTTAGCATGGAGGATTTTAATTTCAAAGCTGAATAATGTAGATATTTGATTTTGCTGTTGTTAAT AATTTTGGTATATTGGATGTGCAAGAACCTAGGTATAGAATGACAGAATGCGGGCTAATTGTTGATTGAACATTACACCA TCATCATACACAATTCATAAAGATTTTGGCTGTTACCAATTCAGCATTGGCTTGTTGGCATCATAAATTTTTTAGTTAAT TGAATATTTCATGGCATGTGACTTGTAGTTCACTCCTATGTATGTGTATGGGCTCAAGGAGGGAGGAACATGTGTTTCAG ATGATGTTGGTATAACTCACTTATTGTAGAGGCTGTGAGGATGTAACATTACTTTGTTAATTTTGAGCTTCTGTCATCTT AAAGAACGAAAATGTTGAAAAGAACAGTGTGCATGAAAGTAAGGATTAGAATGGATGTGGGCATTAGTTCTTACTTGATG CTTTTGAATTTGTTTTAGAAGAAAGACAGTGACAAACATTTGTGAATTAAAGGACGATAGGAACACTTCAAGATCATCTA CAATGTCCCGGTCGTTACAAACCTAGCGAGTTTCAGGCTTCCGTGTATACCATATCCAGTCCTATGAGTATTTTCTTTTT AAAACATCATCATATCAAATACAGAAAACTGTAGAGTCAGAGCTTTATGCCATGTCTTAAAGGGGGTGTATTTTTAAACG TTACTAGCTGTCATTAGCACAGCATAATGTTTTCCACTCTTAAGGTTATAACTTGTAAGAGAAGAAGCTTAGTTTAGTGT GGATTTAAAGATTTATGAGTTTATTGTTGATGGACATAAGTCTATGAAGGTTTCACGCTTTTTTAAAATTATTGTTATTT GAAGTATCAGTGGTAATTTATGCACAACAGTTTTTTTAATTCCTTCTTTCTGGGTTAAAGATCTTTTTTTCCCCGAAATG ACTTTTTTTGACAGGGTTTTGTCTCGAAAAGATATAGCATCTACTGTAGTATTTGGATGTCCAAGCTTAGATAGGAAAGT GATCAACTCTGGAAAGCGTCTGAGAGCATATTTGGGCATTGATGAGGGAAATGTAGGTGATGACCAAGTTTTCCTTAGTC ATTTATTCTTGTTGATTATGTACTTAAAATTTTCTTTCTTCTCTATGTCCAGCAATTTTTTTCCTTACCTTCATTCAATA ACTAGAAACTTCATGGACTGGTGCTTCGACCAGGTGTGCAGCTCGTGCAATTTGAGAGGGGACTGTGAAAGGGCCTTTGT GAACGCACGTGAAGATGAAGGTGGAAGAACTGTGGATGTTATGCGTATTATTTTAACTTATGGGCTTGACTCAATTATTG CTTCGGTGGAGAACAAGCCATGTCTGAAGAAACAGGTAACAGAATCTGTGAGAAGACTGCTGAAAGAAATAGTTGACCAC AGTAATGAAGACAAAAATTCTAATTTTCCAGACACCACAGAGGCTGTCAATGAACAAGTCCACCCCAATCTGCAAGCCAA AGGCAAAAAAAATGTTCCAATGAAGCAGGGCGACTGGATTTGCCCCAAGTAGCTTAATTTCCATCCACTAGTTATTTTTT GTTATATATCTTGCGAGTGAACAATCAATTCTGTCCGTGAAAAATGTCGGGTCAGTCCCTTTAGTCCCTGAAAGATGGAA ATAACCTTTTTGTCCCTCCAATGAAAAAGGTGATCAATTTAACCCTCTTGCAACATTAATTTAGTTTCTGAAAAGGACTA AAACTATCGCCTTTTTTCATCTTTGAGGAACAAAAGAGTGATTTTCAGCTTTCAGGGACTAAACTGCCTCACAAAAAGTC TAATGGGGGACCAAATTGAGTGCTCACTTTATATCTTGCAGTAACTTCTCCTTCACTTTCTTACATTTCCATTTCATACT TCCATTGGCTAGATGCAATTTCCTCAACTTTGCTAGAAACATCAGGTGCTTGCACTGTGATTGCTTTTGTGAGGAAAAAA TCAAGCAGTTGAAAGAGGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCAATAAGTAATGGCTGTTCATA TTATGTAGCTTTATATAACTAGTATTTAATTTCTAATTAAAGCCATTAATTTGATTTCTGCAGATGCAACTTCCTAAATT TTGCAAGGAACACAAGATGTTTGCTATGCAAAGAGAACCCTTCTAATCGTCAAATTAATCCAGGGGAGTGGGAATGTGAC TCGTACGTTCTCTTTAAATATTTTTATCTTGCTTGAGTTGTTGTAAATGAGGACAAAACTTACCTGCAGTACTATACATG TTTATTAATTTGGTTATATTAGGGTAAATTGCACTTACCTCCTAGGAGGTTTATCATTATTGCACTGACCTCCCCTCTAT TTTGCAAAATGCATTGACACCCCTCTTTCATATATCATTTAGAATAATAGAGGGGTGTCGAGTGTTGTAAAGATGAATCA TAAGGGAGGTCAGTGCAATAGTGATAAATCTCAGGGGAGGTTAGTGTAAATGTTCCCAATAAAGTAAGGGTGGTTAGTGT CTTGTTAAATAATAGAGGGGGAGGGTCAGTGTAACAATGATAAACCTTATGGGAGGTCAGTGCAATTTGCCCTAAATATA ATAACTTCCCCCTTTTCAACCCACATGTCATGTTCTAATAGGACAACCCTATAAACATGTATAGAACTGTCTCTAAGTTT TGTCAATGACCTGTCTTTTTGTATTATGTGGTACTGAAATGGAAATATTGTTTGTGTAGCTGCAACTACATTAACTTCAG AAGAAACATGGCTTGCTTGAAATGTGATCATAGACGACCTAAGATGTCAAATGCTTCAAACACTCCTCAACAAGAGCAAG AAGTTAAAAACAACCACAAGAATAGAAAATTCGTGGAAGATCGGCGTGATAGTAGTGACGAATCATCAACGATGTCAGAA AGAAAGAACAGGAATAGAGAGCGGAGATTTGTGGAGGATGGAACTGAAAATCACAAGTGCTTAAATAGTTCGAATTATCC TGTTCAAATTTTAGATTTTCCTATTGCTGGAGGTAAGTCTGAGTTGTCTGAGCCACTAAGGAGAGAAGAATATAAGAATA AGGCTCTAAAAGAGAGCAAAATGCATTTGTGGCAAAGTGAATCAGATGATGAGTTTTGTTCTGCTCATAACTTGAGTACT GATGATGAGTTTTGTTCTGCTGATAACTTGAGCACTGATGATGAAGAGATGGCCGAATGGTTTGGAAATAATAAGAAATA AAGGTATGATTGCGGAATGAGTATATCTTTGATCACATGTTTTGATATTTGTATGAAGCATAACTTATGGTCCAACCTTA TGTCAACATATATATATAACACACTTGTGACTTGTGAGGCTTTTCACATCATGTTATTGCAATTGTCTGAAGGATGGGAA GAATAGGTTGCAGTTTAAATTTTGGATTTTATGCTTTAACTGGCCTTCGCTTTGAAAATATTCAAGTTTCCTTGTGAAGA TCAATCACAAACTTCAAAATGGTTTGCAATGTTGGAATTTTAGCTTGTAAATTCTTAAATTTCCACATAAGGATGTGTAA CATGCAATATTTTTTGTTTGCTCCTTTGGCCACCAGTCTCCATGGGGAAAAGGAGCCCCACGTGACTAATCTGGCTCGGG ATACGGGAGTGATGTCCCTGGCCACAAAGGTTTTTATTTTTGACCTCAGAGGGGATCGAACCCGGGCTAGAAGCCTAGGT GAAATCCCTTAAGGAAATGCACATTCACCACTTGTGTCACCCCTTGTGTTGTGTAACATGCAATATGATATTTTGTTATT TTAAAACTTAAT
CDS sequence (LotjaGi2g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGCAATATGATCCGAAACCTATTGAAACATGGTCACCACCCACGTTGGGCTCGCGCGTTTCTCAGCTCCTCCCC ACTCTCTCACAGCGTGGCCAGTCCAGCTTCGAAGCTAAACGAGGTTGAAGAAGAATGGAGATGGAAGAGGGAAGAATCAG AACCCGCGGTTCAGGTCTCGCATCCTTGGCCCGAATGGGTCGGTTTGATGGAGTGCTTGCTCAAGAATGGATACTTCCAT GCTGAAGGAAACCCCTTCAAGAATGCTGATATAGGAGCCAAAGAGGCCAATGTTATTAGAACTGCGTGCTTGAATTTTGG GAGAGACCACTTTGATCTTGTAAGGGTTTTGTCTCGAAAAGATATAGCATCTACTGTAGTATTTGGATGTCCAAGCTTAG ATAGGAAAGTGATCAACTCTGGAAAGCGTCTGAGAGCATATTTGGGCATTGATGAGGGAAATGTGTGCAGCTCGTGCAAT TTGAGAGGGGACTGTGAAAGGGCCTTTGTGAACGCACGTGAAGATGAAGGTGGAAGAACTGTGGATGTTATGCGTATTAT TTTAACTTATGGGCTTGACTCAATTATTGCTTCGGTGGAGAACAAGCCATGTCTGAAGAAACAGGTAACAGAATCTGTGA GAAGACTGCTGAAAGAAATAGTTGACCACAGTAATGAAGACAAAAATTCTAATTTTCCAGACACCACAGAGGCTGTCAAT GAACAAGTCCACCCCAATCTGCAAGCCAAAGGCAAAAAAAATGTTCCAATGAAGCAGGGCGACTGGATTTGCCCCAAATG CAATTTCCTCAACTTTGCTAGAAACATCAGGTGCTTGCACTGTGATTGCTTTTGTGAGGAAAAAATCAAGCAGTTGAAAG AGGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCAATAAATGCAACTTCCTAAATTTTGCAAGGAACACA AGATGTTTGCTATGCAAAGAGAACCCTTCTAATCGTCAAATTAATCCAGGGGAGTGGGAATGTGACTCCTGCAACTACAT TAACTTCAGAAGAAACATGGCTTGCTTGAAATGTGATCATAGACGACCTAAGATGTCAAATGCTTCAAACACTCCTCAAC AAGAGCAAGAAGTTAAAAACAACCACAAGAATAGAAAATTCGTGGAAGATCGGCGTGATAGTAGTGACGAATCATCAACG ATGTCAGAAAGAAAGAACAGGAATAGAGAGCGGAGATTTGTGGAGGATGGAACTGAAAATCACAAGTGCTTAAATAGTTC GAATTATCCTGTTCAAATTTTAGATTTTCCTATTGCTGGAGGTAAGTCTGAGTTGTCTGAGCCACTAAGGAGAGAAGAAT ATAAGAATAAGGCTCTAAAAGAGAGCAAAATGCATTTGTGGCAAAGTGAATCAGATGATGAGTTTTGTTCTGCTCATAAC TTGAGTACTGATGATGAGTTTTGTTCTGCTGATAACTTGAGCACTGATGATGAAGAGATGGCCGAATGGTTTGGAAATAA TAAGAAATAA
Protein sequence (LotjaGi2g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRNMIRNLLKHGHHPRWARAFLSSSPLSHSVASPASKLNEVEEEWRWKREESEPAVQVSHPWPEWVGLMECLLKNGYFH AEGNPFKNADIGAKEANVIRTACLNFGRDHFDLVRVLSRKDIASTVVFGCPSLDRKVINSGKRLRAYLGIDEGNVCSSCN LRGDCERAFVNAREDEGGRTVDVMRIILTYGLDSIIASVENKPCLKKQVTESVRRLLKEIVDHSNEDKNSNFPDTTEAVN EQVHPNLQAKGKKNVPMKQGDWICPKCNFLNFARNIRCLHCDCFCEEKIKQLKEDNNHLPLKKGDWICNKCNFLNFARNT RCLLCKENPSNRQINPGEWECDSCNYINFRRNMACLKCDHRRPKMSNASNTPQQEQEVKNNHKNRKFVEDRRDSSDESST MSERKNRNRERRFVEDGTENHKCLNSSNYPVQILDFPIAGGKSELSEPLRREEYKNKALKESKMHLWQSESDDEFCSAHN LSTDDEFCSADNLSTDDEEMAEWFGNNKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 33 | 5 | - | – | |
| Phobius | 34 | 509 | 476 | - | – | |
| PANTHER | 37 | 243 | 207 | 3.7E-184 | – | |
| PANTHER | 37 | 243 | 207 | 3.7E-184 | – | |
| Coils | 206 | 226 | 21 | - | – | |
| Gene3D | 249 | 288 | 40 | 3.8E-9 | – | |
| PANTHER | 250 | 282 | 33 | 3.7E-184 | – | |
| PANTHER | 250 | 282 | 33 | 3.7E-184 | – | |
| SUPERFAMILY | 251 | 282 | 32 | 1.39E-5 | ||
| ProSiteProfiles | 258 | 281 | 24 | 9.247 | ||
| Pfam | 258 | 282 | 25 | 5.7E-6 | ||
| SMART | 260 | 284 | 25 | 0.014 | ||
| ProSitePatterns | 262 | 281 | 20 | - | ||
| Gene3D | 293 | 330 | 38 | 7.3E-9 | – | |
| PANTHER | 293 | 508 | 216 | 3.7E-184 | – | |
| PANTHER | 293 | 508 | 216 | 3.7E-184 | – | |
| SUPERFAMILY | 295 | 328 | 34 | 6.8E-6 | ||
| Pfam | 302 | 326 | 25 | 6.1E-6 | ||
| ProSiteProfiles | 302 | 331 | 30 | 9.484 | ||
| SMART | 304 | 328 | 25 | 2.3E-5 | ||
| ProSitePatterns | 306 | 325 | 20 | - | ||
| SUPERFAMILY | 328 | 364 | 37 | 1.18E-5 | ||
| Gene3D | 331 | 370 | 40 | 1.3E-7 | – | |
| ProSiteProfiles | 335 | 364 | 30 | 9.642 | ||
| SMART | 337 | 361 | 25 | 1.3E-5 | ||
| Pfam | 337 | 359 | 23 | 1.2E-5 | ||
| ProSitePatterns | 339 | 358 | 20 | - | ||
| MobiDBLite | 365 | 419 | 55 | - | – | |
| MobiDBLite | 378 | 419 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0070000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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