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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0073700 |
| Transcript ID | LotjaGi2g1v0073700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein; TAIR: AT5G61930.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial; TrEMBL-Plants: tr|I1L9Q1|I1L9Q1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0073700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:19228220..19232277) extracted from Lotus japonicus Gifu genome v1.2.
AGTTTGGTACCCCACCTATTGGGTTTCCCACCCCACTTTATTCAATACGGGATTTAAAGTTCCGTATTCAATACGGAATT TAATATTCCGTATTTTTTTAATATGCAATGAATGGTTGAAAATGTGCCACATATGCTCAAATACAGTACGGTTTTTTAAG TTCCGTATTATTCATATTAAATACGGAACTTTAAATCCCGTATTCAATAAAGTGGGGTGGGAAACCCAACAGGTGGGGTA CCAAACCCAACTCCCCTCTCCCTCTCTCGCCGGCGCCGACTACTCCGCCGTGGGTTCTGCTTCTTCAGACCGACGACGGC CACCGAATTCGAGTCACTTCCCCACTCACTCTTTATTGCAGTCCATTCTCTCACCTTTGTATTCTCCACATTCACACTGT CTTCTCTTCCTGTAGTTCGAGGACCTTCTGCTTGTGGTTGCCGTCGCCGTATCGTTCGATTCGGTAAGTTTTTCTTCTTT CGTGTTCGTTCAATGCATTCAAACCTGAATTCACTTCCTTCGTATTCGGATTTTGAGACCAATTTCTAGGGTTTAACTCA TTTATCTTGTGATTGTGCTTTGAATGCTCTAATTCCAGATCAGCCCGAAAAACCATGTTATTCTTGAGGCTTGCTTTATA TATCTATCAATTGCACCGTGTATTGGTTAACTATAAGAATTTTCAGTCCAGTAAGTTAGAAAGAGGATGGATTTGGTGTT TGGTACTTGGTTTCAATATGGAGCAAGGTTCAGATAACTAGAATTATTAAAATCACCCATTTCCTCTAACTACTTTAGAT TAGTGTTTTATGGTTAATTGGCAAATTCTGATAGATGTCTTCTTTGGGAACTTTATGTTTATCTTAGCTTTCTTCTTTAT GGTCAAGAAGATGTTTCTCCACACAACAATCAGCATCTCCAGGTATATATACTGCTGATGTATTTTCCATATCTCATACT GTTACGGGCCCATCCTCCAGGCCCAAAATTACCAGTCTATGTAAGACAGAAGAAAGGTGCAGTGCACTTAATTCTGTTAC TGATTTGGATACCTAGCACATACTTGAAATGAAGAAGGAACAATTGCTTAACATCCTTTTAATTTTGCAGAAAAAGGGAA CAATATGTTTGTTTGAAGAATGATTAATAAATTATCCGTTAGGAATCTCATGAATCTATCACCATCGAATTATATAGATT TTATTTTTGGTTTGAAGTATAGAACAGGAGAAGATATGGAGAATAGTTTCTAGAGTCTTGAGTTATGGCAGTACTGTTTA AGTTGTGAATAAATTGTATTTATGAAGTTATGGGTGAGATTTGATATGAAATTTTCAATGTGATGTAGTTCAGATGCACA AGTAGTCAAGTAGGAACTGACAGTAATTATGTGTATAATAATTTTCCTAACAGGTTCATAGATGCTACCAAGTTTTAGTT TTTAAACCTTGTAATCAAAGGGATAGAAAAAAAGGGGATGGTATACTAAATGGAGAGGAAGCATATGAAATTTTTAATCT ATAAGAAGATCCTTGAACTATCTAGTTTTGTGGCTTCAATAGCATGGAAAGCTTCTCTTGCAAATGTCTCAATAAAAATG ACTTCTATTCATCAACCTGAGAAATGAATATTTATTTTGAGTTTCAAATTAAGCTGCACCATTTGAACCTATGACAGTCA AATGAATTGAATAAATTTTTATCCTATTTTTCTAACTTGTTCTAATTTTTATCCTAGTTACATTTTCTTTGAAATCCTGA TTTTCTCCCCTGATATTCTTGACAACTGTTTGTAGAAAGGGTAGAGACTACTGTTCAGAACTTCAGAGCTGAATTTGGAG ATCTGCATGTGTGGGTACCTACCTCCTCTTAACTAAATGTGACTGGGTCCATTTAGTTATATGTTAATGAGATTGTTTAA TAAGTGAAGTGTGATTGTGATCTGATAGTGCCTCAAGGAATATGTTGTTGTACAAGCTCTTCTTATCTTCTTTTGCTCAT TCTGTAGGTTGCCTCCGTAGCAGCTCTTTAACTTTTTTTTTTTAATCTCCATTATGCATCAAGATGTTGTTGTGGTTCCC TCTTAAATTCTACAAATTATAATAAAATTGTTTGGGTTGCTCTTCAGCCATTGGATTGTGCTAGTTGAATTTCTTTGATA CTAGAAAATTTTATTTTCTTGGTGTTTATGCTGTAAAACAAATTCGGAATTGTACGAAATGTGCATATGATTTGATACTA AAGAATCAGACAACTTGTTTATTTTCATGTTGCCATGCATTTGTGAAACTAACAGCACTCAACACTCCGGTATTTACAGT CACGCCGCTGTTCCCGCTCGCCCTCCACCTGCATATGTGCCTTTTCTACATGAGAAATGATGCTGCCAAGACATGTTCAA ACTGTTCGCTATATGCTTGAGAGACTTATTCCTGTGGCACAGCTTAGAGGTATAAATACACATTTCTGTGTTTGGTACTC AACTGTGTCAGCTTGCAATGATCTTCCAAGAAACCTCAAAATGTCTGAGAGGAAACCACTGGTGACAAGTTTTAATGAAC TAAAGCGCCAAGCTAGACGCAAGAGAAAGGAGAGACAAAATGTGCATGAGATTCTTTTGCAACCTCCTGAAAATGGCTTG TTGGTTAAGCAATTAATTCCTATTGCTCATCAAGTTTATGCTGCCAGATCTGAACTATTGTCCAGTGTTTCAAGACTTGT CAAGCACATTGCTATTTATACATGCAACTTATGTGGAGATGTTCATGTTGGTCATCCACCACATAATATTAGAACATGTA ATGTTAGAGGAAGCCCATCAAGCAAAGAACATAGTTGGGTCAAAGGAGGTATTGGCCATGTACTGCCACTTGTAGAGTCA TTTCATTTGTATGATAGAATAGGGAGGGCCGTTTCACACAATGAAATGCTTGAAGTGGACCGAATTCCAGCCATTGTTGA ATTGTGTATCCAGGCAGGTTTTGACATACCTGAGTACCCTACCAGAAGAAGGGCCTTCCCTGTTTATTGTGTTGCTGGTA GGATAATTGATTTTGAGAAAAGATTTCCAAAAGAAATTTCACTTGGCAAAGATATAGATGCATGTGGGTTTTGGTGTAAG AAGAGATTGAATGAAGACACCAATTCGTTAGCAATGCATGGTGATGATATTCAAGCTATTGCTGTCCGAGGCATGAAAGC CTGGGAGAAAATGTGCTCAGGAGCTTCAAAACTTATGGACACATATGCTGTCCAAACATGTGGATATTGTCCAGAGGTAC AAGTAGGACCTAAAGGTCACAGAGTACGAAATTGTCAAGCTTTCAAACACCAGATGAGGGATGGGCAGCATGCATGGCAG GAGGCTACAATTAATGATTTGGTACCTCCTGTATACGTCTACCACATTGGAGATCAGCAATCCGGGAAGCCTTTGGTACA TGAACTTAAAAGGTACTATGGTATGCTGCCTGCGGTGGTTGAGCTATTTGCACAGGCTGGGGCGACAGCTGAAAAGAATT ATGCACATTCAATGAGGGAAGATGTTGTCGTCCCTGAAATGGACGAGGAAAAGTTGGTTGTTTAAATCCATTGGTTGAAT GACTTCCTATAAATGGAGGAACCATTTAGATATGGAAGAGGCTAAATATTAAAAATTAAGCTTTAATTTCTTTCAAATAG AAACAAGTTGTTTATGCTGGGAAAGAAGATGAAGGATTTGTAATTTGGTTATTAGGATAGTAATAGGATGTGAATAAGAA AGAAAATTGGAATAAACAATCTAGTGTTCTGTTGGCAACTTAAGGTGTTGTCTTGATTATATGAAACACTTCTGTTTGAC ACGCACCGGAGACCAATAAACTTGGATTCCTTTGTTGAAAAAAATGCATTTGTGAAACTTAATATGAGATACAAGGTTCA TGTAAAATGAAAATTTTAAGAAAGCTAGTCATAGTTAATGCATTATATGCTTGTGGTGAATTAAATGTATTATTTGGTTA CCACAATAGAAAGTAAAATGATTGATAGTGAATCAAAGTAAAATGTCACAAGCCTTAT
CDS sequence (LotjaGi2g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTGCCAAGACATGTTCAAACTGTTCGCTATATGCTTGAGAGACTTATTCCTGTGGCACAGCTTAGAGGTATAAA TACACATTTCTGTGTTTGGTACTCAACTGTGTCAGCTTGCAATGATCTTCCAAGAAACCTCAAAATGTCTGAGAGGAAAC CACTGGTGACAAGTTTTAATGAACTAAAGCGCCAAGCTAGACGCAAGAGAAAGGAGAGACAAAATGTGCATGAGATTCTT TTGCAACCTCCTGAAAATGGCTTGTTGGTTAAGCAATTAATTCCTATTGCTCATCAAGTTTATGCTGCCAGATCTGAACT ATTGTCCAGTGTTTCAAGACTTGTCAAGCACATTGCTATTTATACATGCAACTTATGTGGAGATGTTCATGTTGGTCATC CACCACATAATATTAGAACATGTAATGTTAGAGGAAGCCCATCAAGCAAAGAACATAGTTGGGTCAAAGGAGGTATTGGC CATGTACTGCCACTTGTAGAGTCATTTCATTTGTATGATAGAATAGGGAGGGCCGTTTCACACAATGAAATGCTTGAAGT GGACCGAATTCCAGCCATTGTTGAATTGTGTATCCAGGCAGGTTTTGACATACCTGAGTACCCTACCAGAAGAAGGGCCT TCCCTGTTTATTGTGTTGCTGGTAGGATAATTGATTTTGAGAAAAGATTTCCAAAAGAAATTTCACTTGGCAAAGATATA GATGCATGTGGGTTTTGGTGTAAGAAGAGATTGAATGAAGACACCAATTCGTTAGCAATGCATGGTGATGATATTCAAGC TATTGCTGTCCGAGGCATGAAAGCCTGGGAGAAAATGTGCTCAGGAGCTTCAAAACTTATGGACACATATGCTGTCCAAA CATGTGGATATTGTCCAGAGGTACAAGTAGGACCTAAAGGTCACAGAGTACGAAATTGTCAAGCTTTCAAACACCAGATG AGGGATGGGCAGCATGCATGGCAGGAGGCTACAATTAATGATTTGGTACCTCCTGTATACGTCTACCACATTGGAGATCA GCAATCCGGGAAGCCTTTGGTACATGAACTTAAAAGGTACTATGGTATGCTGCCTGCGGTGGTTGAGCTATTTGCACAGG CTGGGGCGACAGCTGAAAAGAATTATGCACATTCAATGAGGGAAGATGTTGTCGTCCCTGAAATGGACGAGGAAAAGTTG GTTGTTTAA
Protein sequence (LotjaGi2g1v0073700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLPRHVQTVRYMLERLIPVAQLRGINTHFCVWYSTVSACNDLPRNLKMSERKPLVTSFNELKRQARRKRKERQNVHEIL LQPPENGLLVKQLIPIAHQVYAARSELLSSVSRLVKHIAIYTCNLCGDVHVGHPPHNIRTCNVRGSPSSKEHSWVKGGIG HVLPLVESFHLYDRIGRAVSHNEMLEVDRIPAIVELCIQAGFDIPEYPTRRRAFPVYCVAGRIIDFEKRFPKEISLGKDI DACGFWCKKRLNEDTNSLAMHGDDIQAIAVRGMKAWEKMCSGASKLMDTYAVQTCGYCPEVQVGPKGHRVRNCQAFKHQM RDGQHAWQEATINDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATAEKNYAHSMREDVVVPEMDEEKL VV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 402 | 401 | 6.0E-212 | – | |
| PANTHER | 2 | 402 | 401 | 6.0E-212 | – | |
| Pfam | 39 | 225 | 187 | 9.6E-63 | ||
| ProSiteProfiles | 122 | 206 | 85 | 22.284 | ||
| Pfam | 264 | 380 | 117 | 1.1E-25 | ||
| ProSiteProfiles | 294 | 380 | 87 | 26.428 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi2g1v0073700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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