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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0073900 |
| Transcript ID | LotjaGi2g1v0073900.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter 5; TAIR: AT5G38380.1 zinc transporter; Swiss-Prot: sp|Q9N2V2|NAS30_CAEEL Zinc metalloproteinase nas-30; TrEMBL-Plants: tr|A0A072U7P6|A0A072U7P6_MEDTR Nodulin MtN21/EamA-like transporter family protein; Found in the gene: LotjaGi2g1v0073900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:19246839..19250025) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCGTTCCTATTTTTGCTGGTATCCTATCAGCACTCAGGAGAGTGATTGCGAGGCGTGTTTCAATCAAGGTGGTAAC ACTCATGTAATATGCAGTTAGTAATTCCTCTTTGGTACGAGGTGCGTTATGTGTACCATAATAACTAACCATGGACATCT TTTCTTTTCAGAATCAACTTAAAAAGAGACTCCATGCTTTAACTATTGCCTCTGCGACATGTTTTATGTTTCCTATTGCC ATGTGGGACATAATCATAGTGAGTTCTATTACGAAGAACATTTCATTTTAAGGTCTATATTAGGATAGATTTATGTCGAT GTAAAATTCTTCTTGTCTTGTTTTGTGGTTTTGGCTTGATTTATGTTTGACAATTTCTCTAACCATGTTCCACCTCCTTT GGGTCCTTCAGGGATCACCTTCTGACAGCAACGGAAAACTCCCATTCTCTGCCTGGGCCTTCTTTAGCACTATTCTCTTT GGAAATATTTTGATATTCTATGTTGACAGTATTGCAGAAGAGAGGTATGCCATGATAGTATTGCCATAAGTGATGGTTGA GTGAGAAAAAGGAAGGTTCTTTTGCATTTTGGCTGGCTTCTTATGCTCTATAGATTATCAGATGAGGTTCTATATTTTAA CTATTAACAATTTCATCCCAGTAATAACATTCTTATTTTGAAATTGGCTTCAACTATCGGTTTTATGAAATACTTATCTC AAAATTGGTGACTTGAAGTTTGTTATAATAGGTCAAATTTAAATTCAAGTTCATCTAGTAAGATCTAAATTGGATTTGAA AGTTCTGTATGTTGCAAGATAAGATAATGCATGAGATTTGATGATTTGGATCACTTTGGAGATTGCACATAATTTGGATC ACTTTGTAGATTACTGAAAATTCATACTTCATAATGTAGATTGCACATGGTTTTCTCCTCACCAAGGCATTTGATGGTGG CTAGTGCATGCATCATCATCATGGAGATTGTGTACAAGATGGATTTTTCTCTTACAGGCTTTGTGATTTGCTGCTTAATA TTAGGTTTTGGTACGTCTAGTGCTTAGCTTTGAATATTAAATTTTCTCTTCAAATTTTATTTTCAATGGATTTTTGGTAG AGCTTAAGTAGCCATGAATTCATTATCATGCCTTTTCTATTTTATTTTTTTTCATTTGGATTGCAATTCAATTAGTGGGG TAAATGTTAAAAGTAGCTACTTAAGTATGATTGGTAGTTGTCAGACTCATTAAATCCTAAGATTTCATTTATAGTTTTTG TTTCTAGTTCTCACTTTTGGTGGTAAAACTCATTGATGATGCGAAATGAAGCTAACTCATATTGACATCTACAGCCATCT GTTTTTTAGTTTCCTTTGATTTTCTGCCGATGATTGTCTTAAGGGTGTTTCAATCTTTGCCTTGTAGATAGGTCTAGCAG ATAGCTGGCAGCTGCATTCCTAGTTTTTCTCATTTGATTTTTTTTAAGGATACCATATCATGTCCTTAACTGTACTTGTG CTTTGACTGCTTTCTTTCTTTCCGTTCTCTTTTATAACATAATTTTCGTTAGAAAATATATCAGAGAAGAAAGTTTTATT TCTCTGATTTTGATTGAAAAATACAATCACTCATTTAAAGGCCGAATAGGCTCTATATAAGGAAACCAATTGATAGAAAC TCAATCAGATTGAGGTAAGAAAAGGGAAGAACTGAACAGGTAGTAGATACAAAGAACAGAAAGAAACTGAATATGCTTCT CTTATTAAAAGAATGAAATGTAGAATACAACTCTAGCCTTCGAGAGTCTAAAACTCTCCCAAACTGATCCAATTTCCAGA ATGGATCTTCTAACAGTTCTTACCATTCTTAAAGGGAGAGCTAACTCTACAGTTACAACCGATTTTCCCCTAACTAACAA CCTCTTATTACTACAGATTCTCTCCTAAGTAACTGACTGTTATTACAATGAGAAGTCTCTAACTAACAAACAGGTCTAGT ACCTCAGGCCCACATAAAGTCGCCAAACATCTTTCACTTACTATTCCTCCTATGATAAACCTTTGCAATCTAAGGTGTAT CTTCAATTCTCTATCACCAATCTGCTCTAAAAAAGGACAGAATAATCAGAAATCAGATTTTATTATAATCTGTTACTGAC TTAGATTTTATTACACAAGTCAAAAGTAAACATTAGGAAAGAATCACACAAAATCAAACTTAATGACACCCAAGATGCTT TTCTAACAAGTTTGCTCATTCAGAAAGAAAAGGATGAAGTGATATAAATACTTGAAAATTTAACTTAATACTTTTTGTGA ACAGTGATACTTAGCTTCTCAGATTCTATATACATAGGTTTTATCCCCTGGAATTTATTTCCTGGAAAAAAGGTTAAATC TATTTTAAACTTAGTTGATCTTTAACACCATGCATGTGGAATTCTTGAGTTTCACTGGTCATTTGTCGCTTTTTCTTATT AGGTCTTTCATAAGAATGAGGTTCAGTATTGTTACTGGTGTCTTGACTCTTGGAAATATTGAATGTCTATCCACTTTATC TCTAGCCAATGTGTAGGACTTCTAATACACCCCGTCATGCCTAGAGTTGGACATCTGGAGCGTGGAATTTGCAGGACTGG ACATCTGTTTTGTCCACTCTTCTGATGTTTGATTATTTTTCTAGGACTACTAGAATAAGTGCATGTAATTTAACTTATTC TGAGGAAGGAATCACTATTCCAACTAAGCTCTTGAAAACAATTTGTAACCATATATGCACTGAACTCAATTTTCCAATAT TAGTTATCCATTATATTGGATTCCCTCTGCCTTACTGTTTTAAAGAGTTTTCATTGCGGAAGACAGTTTATTGTTATTAA TACAGCAGAAATATGCAGTACAATGATGCATACATATTCTCACAATCGGTTTTGTGAAATCTGAAAAGATTTTTAAAACT GTCGACTGCATATTGGCATACTTTGGTGTGCATTGTTCTTGCTTTCCTTTCTTGTTTCTATTTTTCTCCTTTTAGTAGTT TATCCTGAATGCTCATTGCAATGGAATTTGGTAGGGATATATCAAGCAACTTCACTGGAGCGCAATAGAAAAGATTCTAC CCGAAATTCTGATTTATCAAATGGAGAATTTGATGATCAAATCCAGATGTCGTCGCTACCTACTTAA
CDS sequence (LotjaGi2g1v0073900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCGTTCCTATTTTTGCTGGTATCCTATCAGCACTCAGGAGAGTGATTGCGAGGCGTGTTTCAATCAAGAATCAACT TAAAAAGAGACTCCATGCTTTAACTATTGCCTCTGCGACATGTTTTATGTTTCCTATTGCCATGTGGGACATAATCATAG GATCACCTTCTGACAGCAACGGAAAACTCCCATTCTCTGCCTGGGCCTTCTTTAGCACTATTCTCTTTGGAAATATTTTG ATATTCTATGTTGACAGTATTGCAGAAGAGAGATTGCACATGGTTTTCTCCTCACCAAGGCATTTGATGGTGGCTAGTGC ATGCATCATCATCATGGAGATTGTGTACAAGATGGATTTTTCTCTTACAGGCTTTGTGATTTGCTGCTTAATATTAGGTT TTGGGATATATCAAGCAACTTCACTGGAGCGCAATAGAAAAGATTCTACCCGAAATTCTGATTTATCAAATGGAGAATTT GATGATCAAATCCAGATGTCGTCGCTACCTACTTAA
Protein sequence (LotjaGi2g1v0073900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVPIFAGILSALRRVIARRVSIKNQLKKRLHALTIASATCFMFPIAMWDIIIGSPSDSNGKLPFSAWAFFSTILFGNIL IFYVDSIAEERLHMVFSSPRHLMVASACIIIMEIVYKMDFSLTGFVICCLILGFGIYQATSLERNRKDSTRNSDLSNGEF DDQIQMSSLPT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| PANTHER | 1 | 171 | 171 | 6.7E-97 | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 33 | 15 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 34 | 53 | 20 | - | – | |
| Phobius | 54 | 64 | 11 | - | – | |
| Phobius | 65 | 84 | 20 | - | – | |
| TMHMM | 68 | 87 | 20 | - | – | |
| Phobius | 85 | 103 | 19 | - | – | |
| TMHMM | 94 | 116 | 23 | - | – | |
| Phobius | 104 | 137 | 34 | - | – | |
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 138 | 171 | 34 | - | – | |
| MobiDBLite | 148 | 171 | 24 | - | – | |
| MobiDBLite | 156 | 171 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0073900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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