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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0075000 |
| Transcript ID | LotjaGi2g1v0075000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Delta(7)-sterol-C5(6)-desaturase; TAIR: AT3G02580.1 sterol 1; Swiss-Prot: sp|Q9ZT29|SC5D_TOBAC Delta(7)-sterol-C5(6)-desaturase; TrEMBL-Plants: tr|I3S5C2|I3S5C2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0075000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:19623659..19625981) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTCTTGCAAATATCTGTTGCTATGAAAGCGATGCCTTGGTACAGTTTGCTTCCAACTATTTCTGAGTACCTGACAGA AACTGGCTGGACTAAGTCCTTTCCCAGAATATATAATGTTGGTTGGGTTTCCTACATTGTGTGTTTAGCAATTTATATGA CTATTGTAGAGTTTGGTATTTATTGGATGCACAGAGAACTGCATGACATAAAACCACTCTACAAATATCTTCATGCTACC CATCACATCTACAATAAACAGAACACTCTCTCCCCATTTGCTGGTGAGTACATTAAATATTCAACACTGCAATCATAGTT ATGCCAATCTGAACTCTATTCGTATATTCAGATATTTCTTCATCTTTAACTATCCTTGCTATTTTCATGAGAAATGTTTT TGTCTATTGTTGGGTTATTCAATAATTTATGCATATGATGTGGTAGATGATACTTGTTAGATGATACCTGCTTATATGAT AGAGCTTTTAGTCAAACTGGCTCAATATCTGATTTTGAGGCAGTGTTTTGCTAGTGAACCTTCAAGTTAATCACTCATAC TATCACTCTATCATTAAGAGGTGTTGGAGTGTCGGATATTTTTCCAACACTGGTACCTGTGACACTGCTTATTAGTTGTC AAGTTAGAAAATGATTTTTAATCAGCTATGACATTTAGCTGACATGCCTTGGACACTTAGCCAACACTGGAATAAGGCTT GACATGAAGGACATTACTCTCGTAGAAAACTCTAATTTTGTTATTTAAAAATAAAAGGTAAAGCCTGAAAATTGTGAAGA AAGGTCTCAACACACTCAATTGAAATGCTACTCTTCCTCTATTCGTCCTCCCTGCACTTTTTAGGATAATATTCTTTTCA ATTACATCAAAGTTCAGGGATTTGGACAGGCAATGATCTTAATTGAGAAATTTTGGGGGAAGGTTTTGGAAGCCCTTCCA AAATTGTCCTAGTTTTTATCTTTTGTTTTGCCTAATGACCTACTTAGCCAGAATATGCAGCAGTGAACTAATGACAAGGC ACATCTGGAAATGGAATTGAAAATCTTCCACTTATATTTTTCTGATTTTTTTTTAATAGAGTATCTTCTCCCCTGTCTTT CACAAAGAAGCTAGACAATTTTTTTCCTTTTTTGGTTTATTATGCCAAATAGTTAGAAAAAAGGTGGTATGTCAGACCAG ACCACTACACCACCCAAAACAGTTGTAAGATCCATTAATGCAAAGATACAAATGGAGCAATTAAAATCACAGATACTTAT TATGGTGAATAGTTGTAGGTGAGTACTATATCTTATGTGAAAATACATGGCATGTACAAATCACCAATTTGGAATCTCTT GTGCATGTCATCCGTCGCGATGATGCTATTTTACTTTCATTTTAGTGGCTGATAAGTAGCTGTGTTCATAAACCATAAAG TACTAATACTAAAACACTTGGTACAATATACAAACAAAACCTTTGTTAAGTAAAATTTATGTGAGTTTATTTTTTTCCAT AGAAATGAATGCCTCTCATTTTGCTTGCTTGAAGAAACCTTTCTCTATTTTGGTGACAGGAGATTGTTCTTTTAATATAT GTTAATATGTTTCATTTGTATGTTATGTCATATGCACTTAGGTTTTGAGAGCTACAATAAATTTGATTTACTCTTCCATG GTTTCCTTATTAATATCACTTTGATATTAGATGTCACTTGTTTTGTCCTGTTATGAACCTTCACATAGGAATAGGATCTA GTCATAGGTCTGGACACAGGAATTCTTCTTGCAACCTATATTACGAAAGAAGCATACCGTCTTTGATCGAGCCCCTTCTA ATTGTATGGTAATTTAGAGAATATTTGATTGTTCTGTCAAGTTCAAGTCTGCTTCTCTTGTTCAATATAGGTCACAAGAA GAATTTATATGTACAGATGCGTGACTAGATCCTACGTCAAGGTTCTTAACAGGTCCAGAGTGCCATTCCCATCAGATGAA GGGTATACTAACTTTTCCAACGAATCTCAGGTTTGGCGTTTCACCCTCTTGATGGGATCCTTCAGGCACTACCGCATAGC CTTGCTCTGTTTGTTGTCCCAATCCATTTTACTGCACATTTAGCCCTCATATTCATTGAGGGTATTTGGACTGCAAACAT TCATGATTGCATTCATGGAAAAGTGTGGCCTGTTATGGGTGCTGGTTACCACACCATTCATCATACCACTTATCGGCATA ACTATGGCCATTACACCATATGGATGGATTGGATGTTTGGGACACTTCGCGACCCCGAGGAGGATGAAGACAAGGCGATG TGA
CDS sequence (LotjaGi2g1v0075000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTTGCAAATATCTGTTGCTATGAAAGCGATGCCTTGGTACAGTTTGCTTCCAACTATTTCTGAGTACCTGACAGA AACTGGCTGGACTAAGTCCTTTCCCAGAATATATAATGTTGGTTGGGTTTCCTACATTGTGTGTTTAGCAATTTATATGA CTATTGTAGAGTTTGGTATTTATTGGATGCACAGAGAACTGCATGACATAAAACCACTCTACAAATATCTTCATGCTACC CATCACATCTACAATAAACAGAACACTCTCTCCCCATTTGCTGGTTTGGCGTTTCACCCTCTTGATGGGATCCTTCAGGC ACTACCGCATAGCCTTGCTCTGTTTGTTGTCCCAATCCATTTTACTGCACATTTAGCCCTCATATTCATTGAGGGTATTT GGACTGCAAACATTCATGATTGCATTCATGGAAAAGTGTGGCCTGTTATGGGTGCTGGTTACCACACCATTCATCATACC ACTTATCGGCATAACTATGGCCATTACACCATATGGATGGATTGGATGTTTGGGACACTTCGCGACCCCGAGGAGGATGA AGACAAGGCGATGTGA
Protein sequence (LotjaGi2g1v0075000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLQISVAMKAMPWYSLLPTISEYLTETGWTKSFPRIYNVGWVSYIVCLAIYMTIVEFGIYWMHRELHDIKPLYKYLHAT HHIYNKQNTLSPFAGLAFHPLDGILQALPHSLALFVVPIHFTAHLALIFIEGIWTANIHDCIHGKVWPVMGAGYHTIHHT TYRHNYGHYTIWMDWMFGTLRDPEEDEDKAM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 191 | 191 | 2.5E-109 | – | |
| PANTHER | 1 | 191 | 191 | 2.5E-109 | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 42 | 63 | 22 | - | – | |
| Pfam | 50 | 179 | 130 | 1.4E-19 | ||
| Phobius | 64 | 191 | 128 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0075000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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