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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0080800 |
| Transcript ID | LotjaGi2g1v0080800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Defensin fusion; TAIR: AT4G30074.1 low-molecular-weight cysteine-rich 19; Swiss-Prot: sp|P82733|DF183_ARATH Defensin-like protein 183; TrEMBL-Plants: tr|I3SMS4|I3SMS4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0080800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:21498886..21499510) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGACAAAACAAAGAATTTTACTCTAATGGCGAACCATCTCAAAAACTCTTTAAATTTCTCTGTCTTCTTGGTTTTT GTTCTTGTTGGTTAGTATCTTGTATAATATTATCTTGATGCTTAAATATATATGATTTGCATTCCCACTAACCATTTTCT TTATTATATATATAGTGCAATCAACAGTGGAAGGAGGAAGCATATGCTCACAAGTTACGAGTAAATGTGATTCCAATCAA GCTTGTGACAATTTTTGTAAATTTTTTATGGGTGATAAGAGCCCAAAAGGGATTTGTGATGTTAAGTTTAGCACGTGCAC CTGTTTCTTCGATTGCGGGCCTCCCCCACAACCTGGAACTTCAAGGATGTGCAGCAGGGAAATTGGACTTTGTAGTGATC AGTGCAAGTCAGATTGTGAAAGCAAAATTAATAATAGCCAAGGGTATTGTGATGCTAGATATGGTGCCAACTTGTGTGTT TGCAAATATAATTGTTGATCAGGTTGAATGTGAGATCTGAACCCACAACATCCTTATTCTATGAGAAAACCCATGCCACT AATGTTGTCGGTATTGGAACAAATATATTTTTTGAATTGAAATAAATACAATATTATTTCAAATG
CDS sequence (LotjaGi2g1v0080800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACCATCTCAAAAACTCTTTAAATTTCTCTGTCTTCTTGGTTTTTGTTCTTGTTGTGCAATCAACAGTGGAAGG AGGAAGCATATGCTCACAAGTTACGAGTAAATGTGATTCCAATCAAGCTTGTGACAATTTTTGTAAATTTTTTATGGGTG ATAAGAGCCCAAAAGGGATTTGTGATGTTAAGTTTAGCACGTGCACCTGTTTCTTCGATTGCGGGCCTCCCCCACAACCT GGAACTTCAAGGATGTGCAGCAGGGAAATTGGACTTTGTAGTGATCAGTGCAAGTCAGATTGTGAAAGCAAAATTAATAA TAGCCAAGGGTATTGTGATGCTAGATATGGTGCCAACTTGTGTGTTTGCAAATATAATTGTTGA
Protein sequence (LotjaGi2g1v0080800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANHLKNSLNFSVFLVFVLVVQSTVEGGSICSQVTSKCDSNQACDNFCKFFMGDKSPKGICDVKFSTCTCFFDCGPPPQP GTSRMCSREIGLCSDQCKSDCESKINNSQGYCDARYGANLCVCKYNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 127 | 127 | 3.0E-22 | ||
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 127 | 100 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0080800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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