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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081500 |
| Transcript ID | LotjaGi2g1v0081500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cystinosin like; TAIR: AT5G40670.1 PQ-loop repeat family protein / transmembrane family protein; Swiss-Prot: sp|P57758|CTNS_ARATH Cystinosin homolog; TrEMBL-Plants: tr|A0A072TV48|A0A072TV48_MEDTR Lysosomal cystine transporter family protein; Found in the gene: LotjaGi2g1v0081500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22179037..22184786) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAACACAATTCATGCCTTAAACTCCTAGTTTTGTGTTATTTTGAACATTATTCAATTTCACTCATCATAACAAACAA TATTCGAACACTACACAGCAATAACCCACACATCAATAACTTTTGGGATTGGTGTGGGTTCCTAATTTCTTGTTCTAAAA ATCAACATCAATGGCTTCTTGGCGTTCTGCTCCACTTCATGTGTCATATGATGTTGTGGGTTGGATTGCCTTCATCTGCT GGTCTGTGAGTTTTTACCCTCAGATTCTCTTGAACTATCGCAGGAAAAGGTATGTAACTCTAAAAATCATTCATTTTTAT TTATTTATTTATGAAAATACATGTATATTGTGAGAGGTAATAGGAGATAATCTTACCCTTACAATCACAAAAAAATGACC GACATCATCAAGTGCAAAGATCAACTGGCACGATATTATGTTTCAAGTTCCTATAAATGTAGTTTTATTAATTGGTTAGG AGAGTTTTGATGTTCGTAGAGGTTTACAGGGTTTGAAGGTACGTTAGATCTATGTTTTAAACAAAAACAAGGACCAATTT TTTTTATTCAAATCCAAGTTTAGTATCTATCATGGTTATATGTAAAGATTAATACCACTCCTCTAGCTTATTTGATTTGA GTTTTCCTTTGTGGTTTAGCGTTGTGGGGATGAACTTTGATTACATGGTGCTAAACTTGGTGAAGCAAACATGGTATTTC GTCTACAACTTGTCTCTGTATTTCAGCTCTACTGTTCAGAAGCAATACCATGACAAATACGGTATCAAAGAGGTTAGTTC TAAATCTGAAGTTTGAAATATTCAATTCAAGTGAGAGTTCCATGAGAATTAGGAATGTTATACTCACTCTTTTGACATAT TCTTCAACTTCTGTTTTATGATTTTGTATTTTCTGAAAAATTAAAATTAATTAACATTTTTAATTTTAAATTGATTACTT TAAAAAATGTATTCATTTATTAAAAAATAAATCAGTCATAAATAACATATGGAAGAATGTTTTTTTTTTTGATAAGCACA TATGGAAGAATGTATTGTTTACTTCTCTTTCTCTTGAGACGTATTTTTTCTCAACAAGTCATGTCTACAAATAAATCTTT CATTAAAAAAAAAACACTTGGAAATCTGTATTTTTTTACTTGGTAGTTAGTTACTCTGTTTTTTCAAAAGGCATTGCAGG TTTTCCTCTCTTGGACAAATAACAAATTTTTTTTGAACGTGACAAATAACAAATTTGAAAGCTAGAATTGTGTATTATAA AGTGACAACTCATATCTTTTGAGCAACAATTTTTTTACTCAAACCGTATCTCATTCTCTTTTCAACTAATAAAATTTTGG CATATTAATAAAAAAACAAATGTGCAAGTTTGTAACAGCCTCGTGTCTTTTTTAATTAACACGATAATATTTCATTGGTG AAATATCAAATAAAGACTACATTTAAAGACTCAAAGATGTTTATCCCCTTTTAGGTTTTTTTGGATTGTATCCCCTTTTA ATATTGCTATTAGCTTTGAGAAGAAAATGAGTTTGTATAATACTTTCATTTTACAATATATTCTACTATAATTATTTTTT TGGATTTTATATATATTTTAAAATTAATCTTCAAACATATTTTAATTAAAAATCTAGTTAGAAAAACACAAAACAAAACA ATGTTTATCATGGTTTTTTTTGGGACCAATAGAATTATTGAGCTATTTGATACGTTTGATTTGATCATTAAGTGGGTCAT TAATAATTTAAGTATAACATTGCGGAGAGCTAAACTTTTAATTGTTGGTCCATTTCAGATGATACCTGTGGCAGTAAATG ATGTTGCCTTCTCAGCGCATGCTATTCTACTTAGTGCAGTTCCTGTATTCCAAATTGCAATCTATGAAGTACTATTTTAT TCTTTTTCATTCACCTCTCACTCATTGTATTTGTACTTGCTTAGAATTCTAAACTAAAAATTGCACTAATTTTCCATGTA TGTAGCGTGGAAATCAGAAAGTTTCAAAAATTGCCATTGGAATCATGGTGATTATGTGGTCAAGTATAGCAGTTTGTTTC TTCATAGCTTTGCCTAAACATCATTGGCTCTGGCTTGTCTCCATCTTGAAGTATGTTACCTCTACTCCTTTGTTTTATGG TCAATATATTAGCATTAATTAAATTCAATGTGGTTCTTAATCTGTTATTATATCAGTTGCATTCAAAACCCTGAACAATT AATTAAACAGGAGAATTCTACTGTATATTACTTGTTGAATTTGAATTTAAATTGTAATATGCACAATTAGCTAGCATGAT TCTAACTTATGTTGAAATTGACTGTGTTGCAGTGTAATGCAAGTTATTTTGACAGTTATAAAATATGTTCCCCAGGTGAA TGATTTATCTTAATTTGCATATTTTCTTTTTAGTTTTTAATTTCAATGTTTGCTTTTGTGGCTTTTGATATAATGATTAA GAGAAATGCTTGCAATACGCTCTTTTAAAGACACTCTTCAACACACTTCACATGATTATTAGAGGATGTATGTAACTCTT AGATAAATAGTTCAATTTTGATATCCAAATCAGATAACCTTGAGTGAACCATTCCTTCAAATCCTTCCACAAAAACAATG CTTTGCCTAATTGATCACAGAATTCATGAACCAAGAGTGCACCAAACTGTTGCACCTTTCCCAAGCATTATAGCTAGGAT CGAAGCTCGTTGGGTGCTCAATGTTTCCATCAAGAAATTTGTATTTATTCTTCGAAATTATAGCACACTTCACTTCTAGC CCAAGATTAGTAGTTTCTTCCATTGAGCAGGGGATTCTTCTATGGAGCCGCATGGATCCATCATGTTTCCTATGATGGAT CCATGATCGGAGAACCTCCTCTACCTGTTTGTGCAGGTCCTCCACCTCTGATTTTTCTTCAACATTGCTCTAAGCAAAAG AGACATATGTTCAATGTGACTGAAAAGTAATTTTTTATTCAACAGAACTAAATTGATTACACTGGTTCTACTTATACTCC AATATGCTATGCTAAGTACAATGATCCATTACTAACTATGGTGCCTACTAGGGTGGGCAACTTTTTTTCTGGTCCACCGG TGGACCATGGTTAACCACCATTAGATCTAAGAATCTTGAAATATTTTTTAATTGAATGGTTAGGATTGGTTGGATGATGA AGGGGCAAAAACGGTAATTGACAACCCCTCCAATTAACCATCTCCTCCATTGAAACATAGTGAGTCTTCAATCATCTTCT TCTTATGAAGCCACTATCTTAGCCACCATCAACCCTTAAATAATTTCTAGAAAACACCATAATCCTCCCCATTGATTCTT CCACCTTCTCAATACCCCACGCATCTTCTTCTTCTAAAAAAGTCACAATTTTCTTCATCCATCATGACCAATACACTAAA ACACCATAACCAGTAACTTCTACCCTTCCATCTTCTTTCATCCCTCAGCCTTCACCATAACCAGTGAACCTTAGCCACCA TCACTGCCTTCAACCTCGCACATTTCCATCTCCAGCACCCTCTACCTTCCCACCTTCCCACCTTCACCTCCATACCCTCA TTACGAAACCCAGAAATAGAAACCAGAGAAGAAAAATTGAATCTTTCTTAGTTGAAAAACAAAAACAAGACATTCAGAAG ATAGACAAAACTCAAAAACCCAGAAACAACAACAAAAGAGAAGAAAGATTGATTTTTTTTTGAAACCCACAAAAAATAAT TACCAGGAAAGTTGGAACTCAAACTCGGAAACAGGAATAAGAGAGAAGCTAGATTGAATCCTTTTTAGTTAAAACCCAGA AAAAATAGAGACATGTCATGCATTGATCTGTGCTATCAAATAGAAGACGGAAGAAGAAAAAGAATCAGAAGAGAAGTTGG AAGACAGATCTGTGTGAGGTTTTGATTTTTGATTTGTGCACACTTTTAATTTTTTATTCAGACGTTGGTTGAGAACTTGG AAGAAATAGAGAAGTGAATGAGTGTTTGGCTTTTTCTTCAAGCATTGAATGGGGGTTACGGTTTTGATTAAACACTTTAC TTGATTTACCATGAAGTAATGTTGTGTTGTTGCATTCATGTACTGTCCAGACGGAGAAGGACATGTGCAAGGAGAGTGAG GAAAGTGGGAGGAAGAAGGAGATGAAGGGGTAAAGTCTGAAGTACCCTTGTTAAAAAGTCAATTCTACCCCTGGTGCACC GGTGGACCAAAAAGAAAGTTGTCCACCCTAGTGGACACCACTAACTATCACCAATTCGTTATAACAGACTATAACTAGCT CTCCCGTCAAAAAGACTATAACTAGCTCGAAAACTGAAATGGAAAGTAAAACTAGCACTAACAGAATTGAACTACTATCT AACGGTTAAATGCTGTAATGATTGAATTATTATTTAAAAGTCAACACATTTTTCTCACTTTTTAAAAGAATATAATCAAT ATATTGACTTTGCAAAAATCCTTTGTCTGCATGGACCATGTAAAACTTTCTACACAAATTCAATTGGTTGTTTGTAAACT GATTTTAACACATATATAAGAACCATATTGTAAATCACATATGCTCTTTTATAACAACTAAAAACATGATTATGGACCAA GCTAGTTTCTAAGATGGTCAACCATAGATTTTTAATATTTTCAGAATGGACCAGGTTTATTCTTACTTTTGCAGTTAGCA CAAAACAATTTGTTAGTTATTGATGTTCAATTTGTGTTATAAATATAGGCAGTGATGAACTTCTTGAGAAAAAGCACAGA AGGATGGAGTGTTGGTTTTACTCTGCTGGATTTTGCTGGATCAGTAGCAACCTATGGACAAATGGTTATGCAATCAATTG ATCAAGGTCTGTTATCTCCTTTACTAGACGACCTTAATAGCTCTATCAATTTGCAGTTTGAGCTTAGAACTGATAAATTT CACAATATTTATAAATCTATTTGATTTCCAGGTTCTTGGAAAAACGTCTCTGGTAATATAGGGAAAGTGCTGGTTGCTCT GGTAAGAATAGTGAAACATTCTCTACTTCTCTGAGATATACTTTTCTTACATGTTTCCTTCCATTTTAAACATTCCCCAT TTTTGCTAACTAAAGAAGCTGGCGGACACTTCTTCAATGTTGTTATTTTGATCTAAGAATTTTAACTTCTTCTTACATTC TCCATGATTGATTGTTTATGTTCAAATAAGTTGCTTTAATTTGATGGAATAATTGACCATTGCAGGTGTCTATCCTTTTT GACATCATCTTCATGTGCCAACACTATCTGCTCTATCCTGCAAAACATAACAAATCAGAGACCTCTACTGAGCTTGAAAA TTCCAAGCCTGTGGATCAACCACAACCAGAGCATGTTTAAGGTGTAGATCCTCTTGGAGTGAACCCATCTAATTATTGTT GAAACAACAGAGTTATCCAAGAGAAACAGAGAAGCAAAGATCATTAAGTTGGTTCTGCTCTTCATTAGGTTGATTTGTAA GATTCGCGAGAAATTTCACCTCTTGTAAATATTTTAAATCTTTGTCTAGCTACAATGTCGTCATTTGATTATAAGATTAG GATCATGTGGTTTTGGTTTTCAGGTTTATTAGAATTCTCTATGATAACAAGATTATTTCTAGAACAAGTTGTCCTTTAGT TTTTTTAACCCTTTGGTTTCAAATTATACAATGTAAAGACCATGTCATATGCGGTTAATTTAAATTTGGC
CDS sequence (LotjaGi2g1v0081500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTGGCGTTCTGCTCCACTTCATGTGTCATATGATGTTGTGGGTTGGATTGCCTTCATCTGCTGGTCTGTGAG TTTTTACCCTCAGATTCTCTTGAACTATCGCAGGAAAAGCGTTGTGGGGATGAACTTTGATTACATGGTGCTAAACTTGG TGAAGCAAACATGGTATTTCGTCTACAACTTGTCTCTGTATTTCAGCTCTACTGTTCAGAAGCAATACCATGACAAATAC GGTATCAAAGAGATGATACCTGTGGCAGTAAATGATGTTGCCTTCTCAGCGCATGCTATTCTACTTAGTGCAGTTCCTGT ATTCCAAATTGCAATCTATGAACGTGGAAATCAGAAAGTTTCAAAAATTGCCATTGGAATCATGGTGATTATGTGGTCAA GTATAGCAGTTTGTTTCTTCATAGCTTTGCCTAAACATCATTGGCTCTGGCTTGTCTCCATCTTGAATGTAATGCAAGTT ATTTTGACAGTTATAAAATATGTTCCCCAGGCAGTGATGAACTTCTTGAGAAAAAGCACAGAAGGATGGAGTGTTGGTTT TACTCTGCTGGATTTTGCTGGATCAGTAGCAACCTATGGACAAATGGTTATGCAATCAATTGATCAAGGTTCTTGGAAAA ACGTCTCTGGTAATATAGGGAAAGTGCTGGTTGCTCTGGTGTCTATCCTTTTTGACATCATCTTCATGTGCCAACACTAT CTGCTCTATCCTGCAAAACATAACAAATCAGAGACCTCTACTGAGCTTGAAAATTCCAAGCCTGTGGATCAACCACAACC AGAGCATGTTTAA
Protein sequence (LotjaGi2g1v0081500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASWRSAPLHVSYDVVGWIAFICWSVSFYPQILLNYRRKSVVGMNFDYMVLNLVKQTWYFVYNLSLYFSSTVQKQYHDKY GIKEMIPVAVNDVAFSAHAILLSAVPVFQIAIYERGNQKVSKIAIGIMVIMWSSIAVCFFIALPKHHWLWLVSILNVMQV ILTVIKYVPQAVMNFLRKSTEGWSVGFTLLDFAGSVATYGQMVMQSIDQGSWKNVSGNIGKVLVALVSILFDIIFMCQHY LLYPAKHNKSETSTELENSKPVDQPQPEHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 259 | 259 | 3.1E-134 | ||
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 1 | 259 | 259 | 3.1E-134 | – | |
| Gene3D | 11 | 72 | 62 | 5.7E-5 | – | |
| TIGRFAM | 12 | 243 | 232 | 1.4E-60 | ||
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 15 | 36 | 22 | - | – | |
| Pfam | 15 | 69 | 55 | 3.7E-17 | ||
| SMART | 26 | 57 | 32 | 1.1E-6 | ||
| Phobius | 37 | 47 | 11 | - | – | |
| Phobius | 48 | 68 | 21 | - | – | |
| TMHMM | 49 | 71 | 23 | - | – | |
| Phobius | 69 | 87 | 19 | - | – | |
| TMHMM | 86 | 108 | 23 | - | – | |
| Phobius | 88 | 111 | 24 | - | – | |
| Phobius | 112 | 122 | 11 | - | – | |
| TMHMM | 121 | 143 | 23 | - | – | |
| Phobius | 123 | 142 | 20 | - | – | |
| Phobius | 143 | 147 | 5 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 168 | 21 | - | – | |
| Pfam | 152 | 207 | 56 | 1.3E-13 | ||
| SMART | 165 | 196 | 32 | 8.6E-8 | ||
| Phobius | 169 | 179 | 11 | - | – | |
| Phobius | 180 | 202 | 23 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 203 | 221 | 19 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 222 | 243 | 22 | - | – | |
| Phobius | 244 | 270 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0081500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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