Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0082000 |
| Transcript ID | LotjaGi2g1v0082000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT1G80960.1 F-box and Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9SAG4|FB93_ARATH F-box protein At1g80960; TrEMBL-Plants: tr|A0A1J7HGR4|A0A1J7HGR4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0082000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22643737..22645745) extracted from Lotus japonicus Gifu genome v1.2.
TCCGAGGCAACTCTCGCATTCTTCTCTTACAACCCTTGAACACAAGAGCCGGAACCCAAAAAGAGTGAAAAGATGAAAGA TAGGGTGTTGAAAGCTGAAGAGAAACGAGATTTTATCAGCAAGCTTCCTGATGAAATCTTGAGCATCATAATTTCTTACC TTCATGTTGATGAAGCTGTTAGATGCAATGTTCTCTCTAAGAGATGGGAAGGTATGTGGAAACTAGCTCCACACATGGAA TTCGATGCAAAGCACATGATCAAGCCATTATCCCAGCTTCTTCATAAGAGGAAATCTCACAAATTACCTTGTTTCCATCC TGATCCATCCAAGAACAAACAAGTCTCAAGGTATGGTCTTAAGATACTCCAGCTGATGTCTCATCACTCTGGTGACATAT CAAGTTGTCGTTTCGTGCACTTCAGAAAGAGTATTTTGTTTGGGGGAGTGGAGGCTTGGGTTGAGTTTCTGGTTGAAAAC AAGGTAGGGTTTACAAATCTGATCCTTCAGTGTGAACCTGATCACTATGGAGAAATTGCTGAAAAATGTTTCTCCAGAGA TGAAATTTGTAAGCCTGATTTCTCACCCGGGTTGTTTAGTGGTTTGTGCTCACTTGAATTGGTTAATTACACAATTGACT CTTGGGCTGCATTTGAGGGCTGCATCAACCTCAAGAATCTTAAATTGGAGAGGATTTACTTGGATGACATAAGCCTAAGT GGGATTTTAGAAGCATGTAAAGGCTTGGAGAATTTTAGTTTGGTTGAGTCCACTGGGTTTCAGACACTCATCATTGTGAA ATCAAGCATTAGAGTTTTACAACTCCAAGCTTTACTTTTGGATGAGGTAGAAATTAATTGCCCCAATCTTGAAGTGCTGC AGCTTGATTCTGTAAAATGTCCACTGCAGCATTTAATTATTAATGCTCCAAGCCTGAGGACTTTTCATTCTTACTGCTAC TCCATTTTTGCAAGACTTCTTCCCATTAATGAAGGTAGATATGTTCTGAAAACCCATGAGATTTTTGCACACTGCAACAG TTCTCTTTCGGTAAGTTCGCTTCATTATAACTCTCTAATTTCTTAATTTTCATGTCAACATTTGCATATATAAATGTCGA TTCCAAGTTGAGGTGTTTTAAAACGTGTGCGATTCTAGCTAGTTTGGATGGAACATGTTTGGGTTTCTACTAGTAGGATT GATTCATGCTATTAAACTGGTTTTTATACTAATTATCCCTTCTTCTTTATTCCATAGGAATCTCCAAATGGTAATTTCCT TCAAAATCTGTCAAACATGTCAATGGATTTGAATTTGAACCGCATAAGTGAAGTCATGGATCTATCTTTGGTCTTGAGAT TATGTACCAATTTACAAACACTGGAAGTTGCTCTGCCGGTATGTTATGTAATGTTTGATTGAAAATTTTATCTCAATGTT TCACTGTAAATGAATCTGTAACACAAAGTTCTACTTTACAGGATTTGACTCATAAAAACTCTGATAATGTTAGCTCTGAT GATTGTGCAACACCATACCCTATATCGATGCTTTTGGAGTCGTGCCATTGTATTCATAAGATGCTGAAGTCTGTGTACAT AAGAGGGTTTAGAGGGAAAGAACATGAAATGGAATTTGTGAAGTATATAATAACAAGAGCAACCATGATGAAAAAGATTA CAATAGAATCAAAGAACTCAAAGAGAGAGGCTGAAAGTTTGCTATCACTTCCCAAAGCTTCCCGCAATCTCTGCATCAAT TTGAAGATCAATGTCAATCCTATGAAATAGTTTGTTGATGAAGATCAAAATAGGCTATATATGTACACAATTGTCAAGTT TATCTGTCATGTACATTAAAGTCTAAATTGTGAGCACTGTTATGCATGTAAAATATGTTGTCAACTACTTGAAGGATCTT GCTTAGCTTAATGTATGTAAAATATGTAGTCAACTACTTGAAGGATTATTCTTGCTTAGCTTTTCTTGAAACGTTAATGT ATGGCTGAG
CDS sequence (LotjaGi2g1v0082000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGATAGGGTGTTGAAAGCTGAAGAGAAACGAGATTTTATCAGCAAGCTTCCTGATGAAATCTTGAGCATCATAAT TTCTTACCTTCATGTTGATGAAGCTGTTAGATGCAATGTTCTCTCTAAGAGATGGGAAGGTATGTGGAAACTAGCTCCAC ACATGGAATTCGATGCAAAGCACATGATCAAGCCATTATCCCAGCTTCTTCATAAGAGGAAATCTCACAAATTACCTTGT TTCCATCCTGATCCATCCAAGAACAAACAAGTCTCAAGGTATGGTCTTAAGATACTCCAGCTGATGTCTCATCACTCTGG TGACATATCAAGTTGTCGTTTCGTGCACTTCAGAAAGAGTATTTTGTTTGGGGGAGTGGAGGCTTGGGTTGAGTTTCTGG TTGAAAACAAGGTAGGGTTTACAAATCTGATCCTTCAGTGTGAACCTGATCACTATGGAGAAATTGCTGAAAAATGTTTC TCCAGAGATGAAATTTGTAAGCCTGATTTCTCACCCGGGTTGTTTAGTGGTTTGTGCTCACTTGAATTGGTTAATTACAC AATTGACTCTTGGGCTGCATTTGAGGGCTGCATCAACCTCAAGAATCTTAAATTGGAGAGGATTTACTTGGATGACATAA GCCTAAGTGGGATTTTAGAAGCATGTAAAGGCTTGGAGAATTTTAGTTTGGTTGAGTCCACTGGGTTTCAGACACTCATC ATTGTGAAATCAAGCATTAGAGTTTTACAACTCCAAGCTTTACTTTTGGATGAGGTAGAAATTAATTGCCCCAATCTTGA AGTGCTGCAGCTTGATTCTGTAAAATGTCCACTGCAGCATTTAATTATTAATGCTCCAAGCCTGAGGACTTTTCATTCTT ACTGCTACTCCATTTTTGCAAGACTTCTTCCCATTAATGAAGGTAGATATGTTCTGAAAACCCATGAGATTTTTGCACAC TGCAACAGTTCTCTTTCGGAATCTCCAAATGGTAATTTCCTTCAAAATCTGTCAAACATGTCAATGGATTTGAATTTGAA CCGCATAAGTGAAGTCATGGATCTATCTTTGGTCTTGAGATTATGTACCAATTTACAAACACTGGAAGTTGCTCTGCCGG ATTTGACTCATAAAAACTCTGATAATGTTAGCTCTGATGATTGTGCAACACCATACCCTATATCGATGCTTTTGGAGTCG TGCCATTGTATTCATAAGATGCTGAAGTCTGTGTACATAAGAGGGTTTAGAGGGAAAGAACATGAAATGGAATTTGTGAA GTATATAATAACAAGAGCAACCATGATGAAAAAGATTACAATAGAATCAAAGAACTCAAAGAGAGAGGCTGAAAGTTTGC TATCACTTCCCAAAGCTTCCCGCAATCTCTGCATCAATTTGAAGATCAATGTCAATCCTATGAAATAG
Protein sequence (LotjaGi2g1v0082000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDRVLKAEEKRDFISKLPDEILSIIISYLHVDEAVRCNVLSKRWEGMWKLAPHMEFDAKHMIKPLSQLLHKRKSHKLPC FHPDPSKNKQVSRYGLKILQLMSHHSGDISSCRFVHFRKSILFGGVEAWVEFLVENKVGFTNLILQCEPDHYGEIAEKCF SRDEICKPDFSPGLFSGLCSLELVNYTIDSWAAFEGCINLKNLKLERIYLDDISLSGILEACKGLENFSLVESTGFQTLI IVKSSIRVLQLQALLLDEVEINCPNLEVLQLDSVKCPLQHLIINAPSLRTFHSYCYSIFARLLPINEGRYVLKTHEIFAH CNSSLSESPNGNFLQNLSNMSMDLNLNRISEVMDLSLVLRLCTNLQTLEVALPDLTHKNSDNVSSDDCATPYPISMLLES CHCIHKMLKSVYIRGFRGKEHEMEFVKYIITRATMMKKITIESKNSKREAESLLSLPKASRNLCINLKINVNPMK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 50 | 49 | 4.8E-9 | – | |
| SUPERFAMILY | 11 | 85 | 75 | 4.97E-12 | ||
| ProSiteProfiles | 12 | 48 | 37 | 8.809 | ||
| PANTHER | 14 | 468 | 455 | 1.4E-56 | – | |
| PANTHER | 14 | 468 | 455 | 1.4E-56 | – | |
| Gene3D | 169 | 474 | 306 | 2.4E-9 | ||
| SUPERFAMILY | 172 | 370 | 199 | 1.7E-5 | – | |
| Pfam | 401 | 441 | 41 | 1.0E-10 | ||
| SMART | 402 | 468 | 67 | 0.0068 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0082000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…