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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0093900 |
| Transcript ID | LotjaGi2g1v0093900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT5G39660.1 cycling DOF factor 2; Swiss-Prot: sp|Q93ZL5|CDF2_ARATH Cyclic dof factor 2; TrEMBL-Plants: tr|A0A0K8K650|A0A0K8K650_CAJCA Dof protein; Found in the gene: LotjaGi2g1v0093900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:29803378..29806852) extracted from Lotus japonicus Gifu genome v1.2.
CCCGGTGACATTTTCCCAAAAAGATTAGAAAAAGAAAAAGGACAACACTCTTTTCTATGAATAAAGGGTAAGAAAAAATG ACGTATCAAGTAGAAAAAGGGAAGGGGGAAATGGTAAAAAAAAATTAAAAGCTTAAAAGGATGATAGTCTGTCTCTGATG GCTCATGTTCTTTGTGCTTTTTGCAGGGTGACTTTTTCTTCAGTGTGTTTTGTGGGGTTTTTAGTGCAAACTTTTCACCC TTGAAAAGTTCTGTGGGAACAAAAGCCTCTTTTTCTCTGTCTCTTTCGATATCTTATTTTTTTTTTTCTCTCTATTGTAT CTATCTATCTATCTATCTATTAGGAGCTTCACAATCTTCAGCAACAGCAATAACATTAACATCATGAGTGGTGAAGGGAA CATGTGTGGTAAGGATCCGGGTTTCATGCTTTTTGGTAGGAGGATTCCAGTGCCGGAATATCAGATTCCGGCGAGCTCTC AAATGGGTTGTCAGATTCAATCCAATTCTGCAATCATGGTACATACTCACATGTCATGCTAAAGATAATTTTTTTTCCAC CTACCTTCTTTTTGTTTTTCATTTCTAGCATATATAGAGAATTAGAGATAGCACATGTTTGAGTACATAATAGAAAAAAT GATCCTGAGACTGTCTTGTGAATTTGGCTTACATAGCTTCCATAGTTATTTATTTTTAGATATACCCTTTTACTAGAATT AAGTTTCAAGCTTCGGTACATTCTGAAATTGTTCCTAAATATTTTTTTCGACATGTTTGTTGGAAACAAAATTACCAATC TAATTCATTTCAGATTCATGTAAATAAAGGCGGGTCTTAATTCTATGAAATGAAGCTAAAATTTTTCATTTTGTCTAAAC TTGTAATTGACTATTTATCTGTATGTTCTTCTTCACACACAAATTTGTTTTTGTGGATAATAGATGTGTATACACAGAAA TACATACATATATAATATGTAAATTTTCCAAGTTTAGACTAAGGTTATTGAAGTTGTCTTCAGAGTGTAGTTTCGTTTCT GGTGTGAAATAAGTGTTCCCGCATTTGTAAAAGTGGGCTATACTGCTCAAGGACGTATGACATAAAATATGATTCACTTA TACAAACACTTGAATTCACGTTCCTTCTTAATTGTATTAGAACCTGTTTCCTTTTTCCTTATCAGCTATTCAACTGCTGG AATCAAAAGAATTTGGTTTCCGGTATGAACTGCATTTTTGAAGTAGTCCTTCTGTTCTGTACAGATCCTTGTCTTGGTGA TTCTATCATCAAACTGAAAAATAAAAATCACTTTCAGTCAAAACTGAACATTGAAAGGTGCTTTTTCTGGGTTCCAATGC ATTTATTGAATTCATTTTGTAATGCTTGATCAATTGTACATAAATTTGGTTCTCTGAAATATGATATGCTGATTTGTGAA ACAAACCGAAATTGACACATATTAGTAAAATAGAATATAGGATATGGTTATCCTTAGGGACGGAACAACATGTTAGGAAA TTGGTACTCACGGTTACGAGATTTTTTTTGCTTAATAGAATAGTATTGAAATGTTATATTTGCGTCCCTAAATATGTATA TTGTCTCTTTCAATTAGTCATAGTTAATTTTATTTAATGTGCTTAATTTTCACTCCCGTACCGACTTATTCTGGTTCCGT CTCTCATTATCCTGAAGGAGTAAAGGCCGGCGCACATAGGAAACTGTAGTATATTCAAAGGAGATTAAAGTTCTAATGAT TACTGCTATGCTATGTGGTATGTAATTCCTGTGTTGTGGAAAATTTATCTAACATGATGGTTGTGTTCCTTGATTTTGTT TCTAGTCTATTCCAATGTTTGATGTCAAATTTTATTCTTCTTGACTTGTAACTGACTAGGTCTTAAATTTCAGAAAACAG AAGCTGAAATGCCACATACTGCAAACTCTGAGCAACCAGAAAATTCTTCTTCTGATTTAAGGGATAGCAGAGAAGAGTCC CTGCATCAGGAAAATCGATCGAAACTGAACACCAAGCCTGTGGAAGACAGTACGGAGACTAGCAGTGCAGATCAAGCTAA AGCTCTTAAGAAACCGGACAAGATTATTCGCTGTCCACGATGCAACAGTTTGGAGACTAAATTTTGTTATTTCAATAACT ACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCCGGTGGAGCGACAAGAAATGTTCCG GTCGGTGCCGGGAGAAGGAAGAACAAACACGTAGCTTCTCAGTACCAGCAAATTATTGTATCCTCTGAGGGAATTCCAAC CACCAAAGACTCTTCTAGGCACCAAGTTTTCTCTGCTCTTGAATCTTCTGCGGTTTTAAGGTCTTCCACGGACAACTGTA CCGTGTTAAAATTCGGTGTAGATGGTTCTCTCAGTGAATCTATGGATTCAATGCTTAATCTTAGAAACCAGAAAAGAAGT TTTGATGCAAGCGCTTCTTTCAAATCTTTAGAGAATGGGGAGGATGAGGTCTCCTTATGTGGATCTTCGGTGACGATGAA TGCTTTTACTCAGGGAAATGAACTGTCGGAACATATCACACCAAAACCTTTGCAGTGTTACCCTGTTCCTCCATGGGTGC AACCTTTGAATCCAGGTAGGAACATGTGTAACCCTTATAGCACCGATCTCACGGCAGTGAATTGGTGTCCCGCAGCGTCA ATGGTGGCGTTTCCCTCAATTTGCCCCCCAAGCATTCCCATGCAATTTGTTCATGGACCATTCTGGAATGGAACATCTTT ATGGGCTTCTGGAAATGGAACAGTATCAATAGGTTCAAATGGTTGCCTTTCACCTTCTTCCTCTACTAGTAACAGCTGCT GCTCAGGCAATCGCTCGCCAACCCTTGGCAAACACACTAGAGATGCAGCTTTCACAGATGAAGTGAAATCAGAAATGTGT GTTCTGGTTCCTAAGTCCCTAAGAATTGATGATCCAAATGAAGCCTCAAAAAGTATTAGAATCTAAAGGTGAAGGGAAAG ACTATATATTGGCGGGTGTGTCCAATCTTGGAAGCTAACCCTGTGGCCAATTCTGGTGCTGATGCATTTCAGAGGAGCAT ATATTAAGTTTCTTAGCTTCAAGTTTTCATTTGGTAGTCCCAGTCAGATAGATAATCTTGTGCATACTACTTGGTTCACT TGCAGAAAAATCTGTTTTGCAAGTAGTATTAGAATCATTTGTGTTATTTCATTTCAATGGTGTACTTAACGATGAAGGTC CTTGAAATTGCAAGTTCAAAAATAAGAAGTGATTGCATCACTAATAATTGTTGGATTTCAGTCTCAGAAATCACCAAGTA GCAATTGATTATCACAAACAATTGTAGGATTGGAATGCAATCAGTAGGAAAGAACGAGAATCAAGAATCACTCTTGATTC TGATACCAGAACTGAACACGATGAGAACAAGAGAG
CDS sequence (LotjaGi2g1v0093900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACATACTGCAAACTCTGAGCAACCAGAAAATTCTTCTTCTGATTTAAGGGATAGCAGAGAAGAGTCCCTGCATCA GGAAAATCGATCGAAACTGAACACCAAGCCTGTGGAAGACAGTACGGAGACTAGCAGTGCAGATCAAGCTAAAGCTCTTA AGAAACCGGACAAGATTATTCGCTGTCCACGATGCAACAGTTTGGAGACTAAATTTTGTTATTTCAATAACTACAATGTC AATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACCGCCGGTGGAGCGACAAGAAATGTTCCGGTCGGTGC CGGGAGAAGGAAGAACAAACACGTAGCTTCTCAGTACCAGCAAATTATTGTATCCTCTGAGGGAATTCCAACCACCAAAG ACTCTTCTAGGCACCAAGTTTTCTCTGCTCTTGAATCTTCTGCGGTTTTAAGGTCTTCCACGGACAACTGTACCGTGTTA AAATTCGGTGTAGATGGTTCTCTCAGTGAATCTATGGATTCAATGCTTAATCTTAGAAACCAGAAAAGAAGTTTTGATGC AAGCGCTTCTTTCAAATCTTTAGAGAATGGGGAGGATGAGGTCTCCTTATGTGGATCTTCGGTGACGATGAATGCTTTTA CTCAGGGAAATGAACTGTCGGAACATATCACACCAAAACCTTTGCAGTGTTACCCTGTTCCTCCATGGGTGCAACCTTTG AATCCAGGTAGGAACATGTGTAACCCTTATAGCACCGATCTCACGGCAGTGAATTGGTGTCCCGCAGCGTCAATGGTGGC GTTTCCCTCAATTTGCCCCCCAAGCATTCCCATGCAATTTGTTCATGGACCATTCTGGAATGGAACATCTTTATGGGCTT CTGGAAATGGAACAGTATCAATAGGTTCAAATGGTTGCCTTTCACCTTCTTCCTCTACTAGTAACAGCTGCTGCTCAGGC AATCGCTCGCCAACCCTTGGCAAACACACTAGAGATGCAGCTTTCACAGATGAAGTGAAATCAGAAATGTGTGTTCTGGT TCCTAAGTCCCTAAGAATTGATGATCCAAATGAAGCCTCAAAAAGTATTAGAATCTAA
Protein sequence (LotjaGi2g1v0093900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHTANSEQPENSSSDLRDSREESLHQENRSKLNTKPVEDSTETSSADQAKALKKPDKIIRCPRCNSLETKFCYFNNYNV NQPRHFCKNCQRYWTAGGATRNVPVGAGRRKNKHVASQYQQIIVSSEGIPTTKDSSRHQVFSALESSAVLRSSTDNCTVL KFGVDGSLSESMDSMLNLRNQKRSFDASASFKSLENGEDEVSLCGSSVTMNAFTQGNELSEHITPKPLQCYPVPPWVQPL NPGRNMCNPYSTDLTAVNWCPAASMVAFPSICPPSIPMQFVHGPFWNGTSLWASGNGTVSIGSNGCLSPSSSTSNSCCSG NRSPTLGKHTRDAAFTDEVKSEMCVLVPKSLRIDDPNEASKSIRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 53 | 53 | - | – | |
| PANTHER | 3 | 362 | 360 | 9.0E-142 | – | |
| PANTHER | 3 | 362 | 360 | 9.0E-142 | – | |
| MobiDBLite | 14 | 37 | 24 | - | – | |
| Pfam | 58 | 114 | 57 | 2.0E-30 | ||
| ProSiteProfiles | 60 | 114 | 55 | 28.118 | ||
| ProSitePatterns | 62 | 98 | 37 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0093900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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