Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0095800 |
| Transcript ID | LotjaGi2g1v0095800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of Vps4 activity in the MVB pathway protein; TAIR: AT1G34220.2 Regulator of Vps4 activity in the MVB pathway protein; Swiss-Prot: sp|Q54I39|IST1L_DICDI IST1-like protein; TrEMBL-Plants: tr|I1MNZ8|I1MNZ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0095800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:31369890..31375709) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAAAAAGTTTTTTGTTTTTTAGATAAGCTACAAATTAAAAAGTAAATGAGAAAAATAAAAAATCCTAGAGCTGAGT TTCATAGATCCTTCTTGAGAAATCAAATCAGAATCCTTGCTCGTTAAGGAAGAAAGACCCACCCCAACCAACACATAACC CTTTGATTTTCTCCTCCGTTAATTTATCATCTCTTTCCTTTCCTATACACTCACCGCACCTCTGTTTTCTGTAAACGCGC TGCAATCTTCGGTTTCTAGGTTTTTCTGAGAAATTCATCTTCATCGAAACTCGCGCCATGTCGATGCTCGATTCCTTCTT CAGCAAGGGTTTTAAAGCTGCCAAGTGGTACTGTTTACAATAGATTTCGTTTTATCAGCGTTTTTTAATGCTTTAATTCC ATGGATTCGGCAATTTTAAACTGAGGACTACACTTTGTTATAATTTTGTTTATAAAGTCAAAGTAATAGATTGTTACAAT TTCATAATTTGTTCTATATTGTTTGGGTATGAATTATGGGGACTGAGTTTCAGTAGTTAATTTTTTCCGGGCAAGATGGT TTGCTTACAAATGTATGTTTGCACTTTCAGCAAAACTCTGCTGAAACTGACAATCCCGCGGATAAAGTTACTAAGAAACA GAAGAGAGATTCAGTTGAAGAATATGCGACGCGATATTGCCAAGCTACTTGAGACTGGCCAAGAAGCGACAGCTCGTATT AGGGTAAACCTGATTTGCTTAGGATGTTGTCTTGTGTCGTTTGTTTGTGTTTGTGTTTCAGAATTTTAAACCACTGCCCT ATGGTTGATTTATATTTTATTTTGTATATCAATGTTCTTAAGATGGTGATCTGTGCAGGTAGAACATATTATTAGAGAAG AGAACATGATGGCTGCTCAAGAGATCATTGAACTCTTCTGTGAACTTGTTGCTGTTCGTCTTCCAATAATTGAGTCTCAA AGGTATGCTACATATGATATGGAAATCTGGCTTTGACTAGAATAGTTGTTGTCTGAATTTGTTTGATATGCCAATATGAT TCACATTCAAGCTAGCCATTTACATAACATGTATTGATGAAACTGTAGGTATGCTATCCAACTTAATTCGAAGTGTAACC AACTTACCATGTCTAACGCAACTTAATATCTAGTAACTACGGAGGACCAATTTGTTTTGTAGATTTTAAACAACACAACC AAAAGTCACTTCTTATGAGTTGTTTGGTGACAAGCTAAAAAATGATGATTAATATTCTCAGCATATCTATTCAGTATTTT CCAATTCTATTTAAATTACATCGCATGAATTGTTAATTCATCTCGCACGATAGCTTGACTCTTGATCTGGTGAGAATTTT CAAATGTTCAACTAGCATTTGCCTAAATATTCTTAACATTGGTTTTGTAGAATATAACTTAGTCTCTTGCCATTTGATTA AATGGATAAATGCTTCAAACGTAGTTTTGTGATTTCAAAGTGTCTGTGAAACTCAAAGGAAATTTCTACCGCAAACTATG AAAGGACTGATGCTCATTGGTGTCTGGAAGATCACGTGTCGACAATAATAAAAAGTGTTTTTTGTAGAGATGAGAATACT GAGGCGAGTGAGTGAATCAGTGGATATGCAAGAAAATATAAAATTACACTCAACTCTATTCAAAACAAAGTTAGAATAGC ACATATAGAGATGGAAACTTTTGTAAGGTGGTCTGGTCACCAATAGAGACTCCTGTGAGAAAAGTGGATCAAATTGCATA TATTTCAACTAAATGAGGTAGAGGATGATGAAAGAAAAAATTCCAAGAACACCAGAAAAAGTTCTTGCTCTGTTTGGTTT CACTGAAAATTACTTTTTGATATAGTCCAACAGTGCCAACTGATCCATCTAGGTGACCTCAGCTTACTGGATAAAACTTT GTTGTTGTTACTTTTTTGCAACTGCAGCCTTTATTACTGCCTTTGTAATTTCATGTTATTGGCATGATTTTTAGCACTTT CTGGCTTCAACCTTTATGATTTACAACTTTCTACGGCTATCGAAAGAGTTATGATATATACACACCTCTCCACTTCTTTT CCACCTCCATTCTATCTATTTCTCTCTTCTTTATCAATCAAATCACATATCACATCTTTATTTTCTCTCTCCTTTCTTCC TATCTCTCTCTTCTTCCACCTCTCCACACCTCAAAAGTGAGGTGTTAAGATATAATTATCCCTATCGAAATTGCCTCAGT TATCATGATTATTGGCTGTGTGAAGTGTAAACACCACTATCGTAGTTAACCAACTTATTTTCTTCCCTCATAATCAAATA GTATATCCACAATTTTCTACAAGTGATATCTGTCTTTGATGGTTATCTAATGTAATGTATGAGCAGCCACCACACTCACC ACTCTTTCAATCACCCTTCACAATTTCACATGCTATAAGACAGTTCTGCTGCTTTTGTTTTCCTTTGTTAGCTTGGAATT TCACATTACAGTCTTAGGCTTTTCAGTCACTGTATGTGAATAACCAGTAACAGCCATGCTCACCACTCTTTTAGTCACCC TTCTCATGCAATAAGTCCATTTTACAGTTTTTCTTTCCTTGGCTTGGAAATTTATTCATGATTAAAAAACATGTCTCTCC CTTACTTCGGGAATTTGGATAGGATTGTTTTCAGCTTCTTTACAGTTTTATTAGAATGTTCATGTTACTTCACCTAAGAA GTTAAGTTTTTAGGATAATTGGTTCATGACAATGTATCAGAGGTCTAGAGTTTGTTCCTTCTCACCACATTCTCCTATTT AAAATAGTTGAATTTCAGTATAATATGAGTTGACTGTCTGCATTGTCTACACTTAGGGTTTCCTTGCTTCTTGAGAAAAC CAGAGGAGAGATAACATGGGAGTGAAAACAGTGAAAATTACGTTACCCCTGTGCGGCCCACAATCGAAAATGATAGGAAA GGAAATCTGTGTGGTAGGTTTCACTGTTGAAGAAACATATGCACTCTCTAGCTTCTTATAAAGAACCTCATAGTATGTTC GTTGAATTTGCTTATTCTTCTTTTAGAAAAACAAATAACAAGAAAACTAATCTGTAAATATTTTTTTCATATAGCACCAT GGTTGTTGCCTCAACACGCTTCATATTCCTGTATACCCCTACCACTCTTTTGCACCCACCCACCACCCCAATTCTTTTGT TTCTTTAGATGTCCATTATTATGTCATTTATTTGAAAAAAAAGTAACATCCTTGTTTCTGAGGCGTGCATGCCTACCAAA TGAAGTGATAGGAGGGTCAAACTTGGAAAGAAAATATATTCTGTGAAGAACCGTGCATATGCTTTACCATCAACTAATTT TCAGAATATTTACATCAGTATTAGGATACTTGTACTATCTATTATCAGTATTGCTGGGCAGACTACGGAATTTGCTTGAT TTTATGTATTTGTGAATATAACAAGTCAAAAAAATGTGTTAAATGGATTTTTGTTGTTGTTCAGGTAATCTTTTTCTCAC AAGTGCATATTATGATTAGGACCCAATTGTTGTTGTTTCTGAAGAATAAAAAGTTTACCATTATTCTCTAATTATGCATC AAATTTCTCAATTTTATTCAGGGAATGTCCCCTAGACTTGAAGGAAGCCATATCTAGTATATGTTTTGCAGCACCAAGGT GTGCTGATCTGCCAGAGTTGTTGCAGGTTCAGTTGCAATTTGCTACCAAATATGGGAAGGAATTTGTATCTGCTGCTACT GAGCTCAGGCCGGACTGTGGTGTTAATCGCCAGGTTCCATGAGTTTTACATGCTATACATAATTTTTTTTTTTATTCTTT TGTAGATAAAACATCTTATCCCAAAAGTTATTTTCTTGTATGACATTCTCCATGGACTTTTTTTAATTGCACAGTTAATA GAGCTTCTGTCAATCCGTGCTCCCTCACCAGAAAAGAAACTTAACCTTTTAAAAGAAATTGCTGTTGAGCACGACTTAGA TTGGGATCCAGCTGCTTCAGAAACTGAGTTCTCTAAAAAACATGAAGACTTATTGGTAAGTATTACACTGTAAGAACTTG CTATGATTTTCTAATTTTGTTCTTCTACACGCTATTGTCTTACATTACATTCCTCTCCTTGTCAGAATGGCCCCACCCAA TTTTTTAGCAGGTCAAAATTGCCGCTTCCTGATGAAAAACACAATGAAGAGTTGTATTCTTCTCATGATACACCCAATGA AGAACAACATGTTTCTGATTCTGATTCTGACACATTTGAATTTCCTGAAGTTCCTAAGGCCTCAGTCCAGCCGAGTGCAA ATTTTGTCAGAGCTCAAGAATCAGTTATACAGATGCATCCCATTGAAGTTGATAATCATTATTCATCAGACCATTCTGGA GATTTTGAAGATGTAAAGCAGGATCAAGTTGAAGAAAGATCAAGGGTTCAGAAAGATGAACCCCATGCTTCATTTGGTAA AACGGAGAGTAAACAGTTTGTGCCTTTCATCTCCCCTCCATCAGTATCATCTGGATTCATCTCCCCTCCATCAGCATCAT CTGGATCACATACCGTGAGACATAGTGACTCAGCCCCCTCCTCGTCAAGAGGAAAATCTGAAGCCAATGTGGACTTGCAG GATGTGTTAGCTGCTGCCCATGCTGCTGCTGAATCTGCTGAACGCGCAGCAGCTGCAGCTCGCTCAGCGGCTAGCCTTGC TCAAGTCCGCATTAACGAGCTTACCAAGAAGAAAAGTAGTGAAGATATACCAGATAGCAGCTCTGAGAACCCATTTTATG CTGGTGGTGATAATGAATCTAGAACAGAAAGGGGACACTCCACTGAGCAAAATACTGCGGGTATGTCTGATGTCTTTGTC CGAGAGGATCACGAACTTCACCAGGACCATTATGCTTCCCCAGGTTCTCATTCATCAAGTTTTCCTTCATTTGACACCCT GAAGGAAGATTTCAACACTTCTTTACCTGGTGATCATGTATTGGGTGACGATTCCTCTAATCACCAGCCTAAGAGATTAC CCTCAATGGATGATGACCCATATTTCTCATACCCCAACTTATTTTCCTCCCAAAACTCAAATGTTGGATCTCAGGATCAT GCAGATAATAGCCGTTCCACTCATGATCTATGATAGGAATTATCTCGTTCAATCACACATTTCCTTATATGACACTGAAG TCTTGCTCTTAAGTGTTTTCTATGCTGCTATAGAATCTACCTTATTTTTTTGTTTTCTTCTTAAAGAGCATGCAATTCCT GGCTTTATTTTCTGCATATAATCTATATATATATGTAAAGGAGACTTGAGGTTTTGCATGTATTAAATGCATTAAACCAT AAAGCTCCCATACATTTATATTAAATATATTAAAAAATAAAAAAATATTAAATATATTGAAAACTGAAAAAAAAATTAGA AAACTATTCAACTACTAAAATAAAATAACAACATTCATAAACTTAAAATTGACTTGGGCTTTGCATTAGATAAATATTAA AAATTAAAATTAAAAAATAAATATTTATTAATAAATAATCTATATATATATGTAAAGGAGACTTGAGGTTTTGCATGTAT TAAATGCATTAAACCATAAAGCTCCCATACATTTATATTAAATATATTAAAAAATAAAAAAATATTAAATATATTGAAAA CTGAAAAAAAAATTAGAAAACTATTCAACTACTAAAATAAAATAACAACATTCATAAACTTAAAATTGACTTGGGCTTTG CATTAGATAAATATTAAAAATTAAAATTAAAAAATAAATATTTATTAATAAATAATTTAG
CDS sequence (LotjaGi2g1v0095800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGCTCGATTCCTTCTTCAGCAAGGGTTTTAAAGCTGCCAAGTGCAAAACTCTGCTGAAACTGACAATCCCGCG GATAAAGTTACTAAGAAACAGAAGAGAGATTCAGTTGAAGAATATGCGACGCGATATTGCCAAGCTACTTGAGACTGGCC AAGAAGCGACAGCTCGTATTAGGGTAGAACATATTATTAGAGAAGAGAACATGATGGCTGCTCAAGAGATCATTGAACTC TTCTGTGAACTTGTTGCTGTTCGTCTTCCAATAATTGAGTCTCAAAGGGAATGTCCCCTAGACTTGAAGGAAGCCATATC TAGTATATGTTTTGCAGCACCAAGGTGTGCTGATCTGCCAGAGTTGTTGCAGGTTCAGTTGCAATTTGCTACCAAATATG GGAAGGAATTTGTATCTGCTGCTACTGAGCTCAGGCCGGACTGTGGTGTTAATCGCCAGTTAATAGAGCTTCTGTCAATC CGTGCTCCCTCACCAGAAAAGAAACTTAACCTTTTAAAAGAAATTGCTGTTGAGCACGACTTAGATTGGGATCCAGCTGC TTCAGAAACTGAGTTCTCTAAAAAACATGAAGACTTATTGAATGGCCCCACCCAATTTTTTAGCAGGTCAAAATTGCCGC TTCCTGATGAAAAACACAATGAAGAGTTGTATTCTTCTCATGATACACCCAATGAAGAACAACATGTTTCTGATTCTGAT TCTGACACATTTGAATTTCCTGAAGTTCCTAAGGCCTCAGTCCAGCCGAGTGCAAATTTTGTCAGAGCTCAAGAATCAGT TATACAGATGCATCCCATTGAAGTTGATAATCATTATTCATCAGACCATTCTGGAGATTTTGAAGATGTAAAGCAGGATC AAGTTGAAGAAAGATCAAGGGTTCAGAAAGATGAACCCCATGCTTCATTTGGTAAAACGGAGAGTAAACAGTTTGTGCCT TTCATCTCCCCTCCATCAGTATCATCTGGATTCATCTCCCCTCCATCAGCATCATCTGGATCACATACCGTGAGACATAG TGACTCAGCCCCCTCCTCGTCAAGAGGAAAATCTGAAGCCAATGTGGACTTGCAGGATGTGTTAGCTGCTGCCCATGCTG CTGCTGAATCTGCTGAACGCGCAGCAGCTGCAGCTCGCTCAGCGGCTAGCCTTGCTCAAGTCCGCATTAACGAGCTTACC AAGAAGAAAAGTAGTGAAGATATACCAGATAGCAGCTCTGAGAACCCATTTTATGCTGGTGGTGATAATGAATCTAGAAC AGAAAGGGGACACTCCACTGAGCAAAATACTGCGGGTATGTCTGATGTCTTTGTCCGAGAGGATCACGAACTTCACCAGG ACCATTATGCTTCCCCAGGTTCTCATTCATCAAGTTTTCCTTCATTTGACACCCTGAAGGAAGATTTCAACACTTCTTTA CCTGGTGATCATGTATTGGGTGACGATTCCTCTAATCACCAGCCTAAGAGATTACCCTCAATGGATGATGACCCATATTT CTCATACCCCAACTTATTTTCCTCCCAAAACTCAAATGTTGGATCTCAGGATCATGCAGATAATAGCCGTTCCACTCATG ATCTATGA
Protein sequence (LotjaGi2g1v0095800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMLDSFFSKGFKAAKCKTLLKLTIPRIKLLRNRREIQLKNMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEIIEL FCELVAVRLPIIESQRECPLDLKEAISSICFAAPRCADLPELLQVQLQFATKYGKEFVSAATELRPDCGVNRQLIELLSI RAPSPEKKLNLLKEIAVEHDLDWDPAASETEFSKKHEDLLNGPTQFFSRSKLPLPDEKHNEELYSSHDTPNEEQHVSDSD SDTFEFPEVPKASVQPSANFVRAQESVIQMHPIEVDNHYSSDHSGDFEDVKQDQVEERSRVQKDEPHASFGKTESKQFVP FISPPSVSSGFISPPSASSGSHTVRHSDSAPSSSRGKSEANVDLQDVLAAAHAAAESAERAAAAARSAASLAQVRINELT KKKSSEDIPDSSSENPFYAGGDNESRTERGHSTEQNTAGMSDVFVREDHELHQDHYASPGSHSSSFPSFDTLKEDFNTSL PGDHVLGDDSSNHQPKRLPSMDDDPYFSYPNLFSSQNSNVGSQDHADNSRSTHDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 518 | 516 | 5.4E-155 | – | |
| PANTHER | 3 | 518 | 516 | 5.4E-155 | ||
| Gene3D | 5 | 194 | 190 | 1.1E-73 | ||
| Pfam | 18 | 181 | 164 | 4.5E-58 | ||
| Coils | 32 | 59 | 28 | - | – | |
| MobiDBLite | 221 | 251 | 31 | - | – | |
| MobiDBLite | 221 | 245 | 25 | - | – | |
| MobiDBLite | 277 | 361 | 85 | - | – | |
| MobiDBLite | 277 | 311 | 35 | - | – | |
| MobiDBLite | 319 | 360 | 42 | - | – | |
| MobiDBLite | 399 | 535 | 137 | - | – | |
| MobiDBLite | 457 | 475 | 19 | - | – | |
| MobiDBLite | 509 | 526 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi2g1v0095800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…