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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0096900 |
| Transcript ID | LotjaGi2g1v0096900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70; Found in the gene: LotjaGi2g1v0096900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:31725304..31727721) extracted from Lotus japonicus Gifu genome v1.2.
CTAATTTGTTCCCCTAGAAAGAAAAAGTCACACTTCATATTCCCTTAGAACTGATAAGTTGCTGCTATCTGTTTAAACTT GAAAGAAACAAAGACGTGAGAAAATGATGCTCTATGTACCACATCCTGCAGGTGGTGTAAGTAGTAGCAAAAACATCAAA GGCTTTGCTCTTCAAGTTCTTACAGGTAGATGGTTCATGATGTTCGCATCATTTATGATCATGTCAGTATCAGGAGCAAG CTACATGTTCAGCCTCTACTCCATAGAAATCAAGTCTTCTCTTGGATATGACCAATCCACTCTCAATCTGTTAAGCTTCT TCAAGGACTTGGGATCCAACGCAGGCATTCTCTCAGGCCTAATCAACGAGGTAACGCCTCCTTGGGTTGTCTTATCAATT GGTGCGGTTTGTAACTTTTTTGGGTATTTCACGATTTGGCTTTCTGTGACCAAAAAATTTGCAAAGCCCCACTTGTGGAA CATGTGCTTGTACATCTTCATTGGAGGAAATTCTCATTGTTCAACCAACACTGGAGTTTGGGTGACCAGCATAAAGAACT TTCCTGGTATAAGGGGTGTTGTCATTGGAATTTTGGATGGTTACCTCTGTTTGAGCGCCATAATCATCACTCAACTCTGC TATGCCTTCTTCCAAAACGATTCCAAATCTGTGATTTTGATCATGGCGTGGCTACCGACTGCTACCGCTTTAATTTTTTT GCCGGTTTTCAGGAACGGCAGGAGGTGTGTTCAACAGAAAAAAGACTCCAATGCTTTCTACATGTTCATCTATTCGACAC TAGCTCTGGCAGTGTTCTTCATGATGATAATCATTCTGCAAAAATGTTTCAAATTCACTCGGAGCGAGTACTATGTTACT ACCGCGCTGATGCTTCTCTTGCTCATCCTTCCAATTGCTGTTGTCATTGCGGAAGAACACAAGATTTGGAAGAGCAAACA AGAACACATCAATTATGAAAATCCTCCAATGAAGTCTGAACAGGTTCCCCAAAAAGGAGTTTCCTGTTGGCAAAACATTT TCAGGCCGCCGGAAAGGGGTGAAGATCATACAATACTTCAAGCCATTTTCAGCCTTGACATGGTAATTCTATTCCTTGCT ACTATATGTGGATTTGGTAGCAACTTAACCGTGGTAAACAATTTTAGTCAGATTGCTAAGTCTTTAGGCTACCCTGCACA TACCATAACCACATTCATCTCCCTCATGGCAATTTGGATATTTCTTGGTAAAATTGCACAAGGGGTTGTCTCAGAGTTTA TGATAACCAAATTCAAAGCCCCTAGGCCTCTCGTACTCACAATACTCCTTGTGTTGTCTTGTATTGGTCACCTTTTAATT GCATTCAATGTTCCAAATGGTCTGTATGTAGCCTCCATTGTTGTTGGGTTTTGCTTTGGGGCAAACTGGCCAATACTTCA AACCATCGTATCTGAACTATTTGGGCTTAAACATTACTCAACATTGGCCAATATTGGGTCAATGGCGAGTCCAATTGGGT CATACATGCTCAGTGTGAGGGTTGCAGGGTATCTGTATGACAGAGAAGCCAGAAAGCAAATGGCAGAATTGGGGCTAAAA AGAAAGGTAGGAGAGGAATTGAACTGCAATGGGGGTGAGTGCTACAAATTGGCTTTCATTATAATCACTGCAGTTTGCAT GCTTGGGGCGCTTGCCTCATTCATTTTGGTGCTTAGGACTAGACAGTTTTACAAAACTGATATATACAAGAAATTCACAG AAGAAGCTAGAACTGATGCTGAAACTGAAATGGTTGTGTCTCTGAACAAGATTGGACTACCTCCTACTTCGGATGAAGGC TAAATATATATCCCCAAGGCCAACAGCTGCAGCGTCTACAGTACGTACGGTATCATTATTCAGCAGTGTCTAATGTAGTG GTCTGTAAACATTAGTAAATGAAGGTTCTTGTCATGTTACTAGTATCTAAGCCCGTGCTTTGCACGGTTATTATGTTACC AGAATTTTTTTTTAAACAACATATTCCTTACATATGTAATATAACAACTCATGATTGTGAAGTTGTGGACAACAAACCAG ATGATACAGCAACTTGTTCAACACATGCCACCACAAACTAAGTGAAATAGCAACGGATGTCCAGTGCAATTCGAGACTCA AAGCCTTCATTTCTTAACCTTTTTTTTCCTAGTTCCTTTTCTCTGTATCTAAAATTGTTTCTACCTATTAATTATTCATT CCTTCTACTATTTCATCAAAGAAATCATCAAGATGCACTGTTATAGTCTCTCAGTAACTCTTCACGTTATTAACTTTTTC TTGGATATCACCACATTGTGTTTCATAACCTGCTATTCTCTCGAACTCCACTTTCAATTCTTCCATCACAAATCACAATA TTCGCTTTTGGAAATCAA
CDS sequence (LotjaGi2g1v0096900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCTCTATGTACCACATCCTGCAGGTGGTGTAAGTAGTAGCAAAAACATCAAAGGCTTTGCTCTTCAAGTTCTTAC AGGTAGATGGTTCATGATGTTCGCATCATTTATGATCATGTCAGTATCAGGAGCAAGCTACATGTTCAGCCTCTACTCCA TAGAAATCAAGTCTTCTCTTGGATATGACCAATCCACTCTCAATCTGTTAAGCTTCTTCAAGGACTTGGGATCCAACGCA GGCATTCTCTCAGGCCTAATCAACGAGGTAACGCCTCCTTGGGTTGTCTTATCAATTGGTGCGGTTTGTAACTTTTTTGG GTATTTCACGATTTGGCTTTCTGTGACCAAAAAATTTGCAAAGCCCCACTTGTGGAACATGTGCTTGTACATCTTCATTG GAGGAAATTCTCATTGTTCAACCAACACTGGAGTTTGGGTGACCAGCATAAAGAACTTTCCTGGTATAAGGGGTGTTGTC ATTGGAATTTTGGATGGTTACCTCTGTTTGAGCGCCATAATCATCACTCAACTCTGCTATGCCTTCTTCCAAAACGATTC CAAATCTGTGATTTTGATCATGGCGTGGCTACCGACTGCTACCGCTTTAATTTTTTTGCCGGTTTTCAGGAACGGCAGGA GGTGTGTTCAACAGAAAAAAGACTCCAATGCTTTCTACATGTTCATCTATTCGACACTAGCTCTGGCAGTGTTCTTCATG ATGATAATCATTCTGCAAAAATGTTTCAAATTCACTCGGAGCGAGTACTATGTTACTACCGCGCTGATGCTTCTCTTGCT CATCCTTCCAATTGCTGTTGTCATTGCGGAAGAACACAAGATTTGGAAGAGCAAACAAGAACACATCAATTATGAAAATC CTCCAATGAAGTCTGAACAGGTTCCCCAAAAAGGAGTTTCCTGTTGGCAAAACATTTTCAGGCCGCCGGAAAGGGGTGAA GATCATACAATACTTCAAGCCATTTTCAGCCTTGACATGGTAATTCTATTCCTTGCTACTATATGTGGATTTGGTAGCAA CTTAACCGTGGTAAACAATTTTAGTCAGATTGCTAAGTCTTTAGGCTACCCTGCACATACCATAACCACATTCATCTCCC TCATGGCAATTTGGATATTTCTTGGTAAAATTGCACAAGGGGTTGTCTCAGAGTTTATGATAACCAAATTCAAAGCCCCT AGGCCTCTCGTACTCACAATACTCCTTGTGTTGTCTTGTATTGGTCACCTTTTAATTGCATTCAATGTTCCAAATGGTCT GTATGTAGCCTCCATTGTTGTTGGGTTTTGCTTTGGGGCAAACTGGCCAATACTTCAAACCATCGTATCTGAACTATTTG GGCTTAAACATTACTCAACATTGGCCAATATTGGGTCAATGGCGAGTCCAATTGGGTCATACATGCTCAGTGTGAGGGTT GCAGGGTATCTGTATGACAGAGAAGCCAGAAAGCAAATGGCAGAATTGGGGCTAAAAAGAAAGGTAGGAGAGGAATTGAA CTGCAATGGGGGTGAGTGCTACAAATTGGCTTTCATTATAATCACTGCAGTTTGCATGCTTGGGGCGCTTGCCTCATTCA TTTTGGTGCTTAGGACTAGACAGTTTTACAAAACTGATATATACAAGAAATTCACAGAAGAAGCTAGAACTGATGCTGAA ACTGAAATGGTTGTGTCTCTGAACAAGATTGGACTACCTCCTACTTCGGATGAAGGCTAA
Protein sequence (LotjaGi2g1v0096900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMLYVPHPAGGVSSSKNIKGFALQVLTGRWFMMFASFMIMSVSGASYMFSLYSIEIKSSLGYDQSTLNLLSFFKDLGSNA GILSGLINEVTPPWVVLSIGAVCNFFGYFTIWLSVTKKFAKPHLWNMCLYIFIGGNSHCSTNTGVWVTSIKNFPGIRGVV IGILDGYLCLSAIIITQLCYAFFQNDSKSVILIMAWLPTATALIFLPVFRNGRRCVQQKKDSNAFYMFIYSTLALAVFFM MIIILQKCFKFTRSEYYVTTALMLLLLILPIAVVIAEEHKIWKSKQEHINYENPPMKSEQVPQKGVSCWQNIFRPPERGE DHTILQAIFSLDMVILFLATICGFGSNLTVVNNFSQIAKSLGYPAHTITTFISLMAIWIFLGKIAQGVVSEFMITKFKAP RPLVLTILLVLSCIGHLLIAFNVPNGLYVASIVVGFCFGANWPILQTIVSELFGLKHYSTLANIGSMASPIGSYMLSVRV AGYLYDREARKQMAELGLKRKVGEELNCNGGECYKLAFIIITAVCMLGALASFILVLRTRQFYKTDIYKKFTEEARTDAE TEMVVSLNKIGLPPTSDEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 12 | 571 | 560 | 5.3E-303 | – | |
| SUPERFAMILY | 12 | 214 | 203 | 1.26E-9 | ||
| PANTHER | 12 | 571 | 560 | 5.3E-303 | – | |
| CDD | 28 | 529 | 502 | 3.02357E-103 | – | |
| Pfam | 29 | 275 | 247 | 3.5E-80 | ||
| Phobius | 30 | 54 | 25 | - | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 55 | 65 | 11 | - | – | |
| Phobius | 66 | 87 | 22 | - | – | |
| Phobius | 88 | 92 | 5 | - | – | |
| Phobius | 93 | 115 | 23 | - | – | |
| TMHMM | 94 | 113 | 20 | - | – | |
| Phobius | 116 | 158 | 43 | - | – | |
| TMHMM | 123 | 140 | 18 | - | – | |
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 159 | 183 | 25 | - | – | |
| Phobius | 184 | 188 | 5 | - | – | |
| Phobius | 189 | 212 | 24 | - | – | |
| TMHMM | 190 | 209 | 20 | - | – | |
| Phobius | 213 | 223 | 11 | - | – | |
| TMHMM | 222 | 244 | 23 | - | – | |
| Phobius | 224 | 244 | 21 | - | – | |
| SUPERFAMILY | 232 | 541 | 310 | 2.62E-23 | ||
| Phobius | 245 | 255 | 11 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 256 | 276 | 21 | - | – | |
| Phobius | 277 | 323 | 47 | - | – | |
| Gene3D | 323 | 545 | 223 | 2.0E-15 | – | |
| Phobius | 324 | 349 | 26 | - | – | |
| TMHMM | 328 | 350 | 23 | - | – | |
| Phobius | 350 | 360 | 11 | - | – | |
| TMHMM | 360 | 382 | 23 | - | – | |
| Phobius | 361 | 381 | 21 | - | – | |
| Phobius | 382 | 401 | 20 | - | – | |
| Phobius | 402 | 421 | 20 | - | – | |
| TMHMM | 403 | 422 | 20 | - | – | |
| Phobius | 422 | 426 | 5 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| Phobius | 427 | 449 | 23 | - | – | |
| Phobius | 450 | 460 | 11 | - | – | |
| Phobius | 461 | 485 | 25 | - | – | |
| TMHMM | 461 | 483 | 23 | - | – | |
| Phobius | 486 | 515 | 30 | - | – | |
| Phobius | 516 | 537 | 22 | - | – | |
| TMHMM | 516 | 538 | 23 | - | – | |
| Phobius | 538 | 579 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0096900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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