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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0097600 |
| Transcript ID | LotjaGi2g1v0097600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70; Found in the gene: LotjaGi2g1v0097600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:31884530..31887162) extracted from Lotus japonicus Gifu genome v1.2.
CCCGCATAGAATTTTTCGGGCTGCTCAAAGGTTATTAATATTTCTTAAAAAAAAAAACAGACTAGAAAGAAATCAAAACT CATGTTGACATAATATCTCCCTCTCTACTAGCATTCAATCTTCTTAAGTCTAAACCATCTCGTTTCTAGTTTGTTCCACT AGGAAAATTTAAAGAATTCACATTCTCCATACTCACTTAGAACATAGAAGTGAGAAAATCATGTTCTCTGCACCACATTG GGGAGATGGTTGCAAAAGCATCAAAGGGTTTCCTCTCCAAGTCATAAAAGGGAGGTGGTTCATGATGTTTGCATCATTCA TGATCATGTCAGTATCAGGGGCTAGCTACATGTTTAGCCTCTACTCCAGAGAAATCAAGTTTGTTCTAGGATATGATCAA TCCACTCTCAATTTGTTAAGTTTCTTCAAGGACTTGGGTGCCCTCATAGGCATTCACTCAGGTGTAATAAACGAGGTCAC ACCTCCTTGGGTTGTTTTATCAATTGGTGGGGTTCTAAATTTTTTTGGGTATTTTATGATTTGGCTTGCTGTGAGTAAAA AAATTACAAGACCCCACCTGTGGCACATGTGTTTATACATTATTATTGGAGGCAATTCTCATTGCTTTACCAACACTGCA GTTATGGTGACCAGCGTAAAGAATTTCCCTGGGACCCGGGGCATTGTCTTAGGCATTGTAGGTGGGTATTTGAGTTTGAG TACAATAATCTTCACTCAACTATACTACACCTTCTTTGAAATCAACTCCAAATCTCTACTTTTACTCATGGCATGGCTAC CAACTGCTACCTCTTTAATTTTCCTACCAGTTATCAAGAACCACAGGAGTATTCAACAGCCAAATGACTCCAAGGTTTTC CATAGGTTCATCTACATGATACTTGTTTTTGCAGGGTTTCTCATTGTTATAATCATTGTACAAAAATGTTTTAACATCAC CCAGAGGGAGTATTATGTCACTTCCACTGTGATGCTTCACCTGCTTACCCTTCCACTTACTGTTGTTATTGTGGAAGAAT ACAAGATTTGGAAGAGCAAACAAGAACATATCAATTGTGAAAATCCTCCAAGCCCCACGGATATAGCAGCAGCAAGAACA ACAACAACAACAACAAAGCCTAATCAAGTGAAGTCTGAGCAGGCTCCTCATGCAGAACAAACTATCCAAAACGGATTTTC CTGGTGGCAAAACATACTCAGGCCACCGAAAAGGGGTGAAGATCACACAATACTTCAAGCTATTTTTAGTCTTGATATGG TGATTCTTTTCTTAGCAACTATATTTGGGTATGGTGGCAACCTGACTGTGTTAAATAACATGAGTCAGATAGGAAAGTCC TTAGGATATCCTGCACATACTATAACCACATTTCTCTCCCTTATGTCAATTTGGATTTTTCTCGGTAAAATTTCACAAGG GGTTATCTCAGAATTTATGATTGACAAATTTAAAGCCCCTAGGCCTCTCATGCTCACGATACTCCTTGTATTGTCTTGTA TTGGTCACCTGTTAATTGCATTCAATGTTCCAAATGGTCTTTATGTAACATCAATTGTTATTGGGTTTTGCTTTGGGGCA AACTGGCCAATACTTTTTTCCATCGTATCTGAATTGTTTGGTCTTAAACACTACTCAACATTGCATAATGTTGGGACAAT AGCCGTTCCAATTGGGTCATACTTTCTCAGTGTGAGGGTGGCAGGGTATCTGTATGACAAGGAAGCCATGAAGCAAATGG AAGCATTGGGGCTACAAAGAAAACCAGGAGAGGAATTGAACTGCAATGGGGGCGAGTGCTACAAATTGGCTTTCATAATA ATCACTGCAGTTTCCATGCTCGGGGCGCTTGTGTCATTCATTTTGGTGCTTAGGACTAAACAATTCTACGAAACTGATAT ATACAAGAAATTCAAAGAAGAATCTCGAACTGCGGAAACTGAAATGGTTGTCCCTAGACAAGAATGAACCACCTGCTTCT ACAGATGAAGGTTAGATATCTTCTGCAAGGAAATGGTAAAAGAAAAATTTGAGAAGCAGAGCAACAGCAAAAGAGGACAA TTAAACAACAATACCCCATCGTTTGAACTTTGGAGGATGTTATTGTATCAATCCCAATTCTTAGCCATTACTGCCACCTC TAATTTACCTTATTTTTATGTATTTTTCTCTTTTTATTGCATCACATGACATCATATATTAAACTATCACTTATCTTCTT ATTTACTCTTTCTGTTTGGAAAGTATACCCCCAAAAGTGGATCCTTTACGGTTAGATAATAATTTTGAGGATCTGATTAC TAAGACTACTTCATGAAATTTGTAGCTTCAGTAGAGAAGGGGACTTATTAATATTTTTGTGTGCACAATTACACCTGAGG TTCACTTGAATGTGAACCTATCTCTTGCTGTAGTCAAACAAACTAACTAACTAACAGAACCCCTAACTGCTTCTCTGTAT TCAATAATTCTGAGTTCTGACTACTAATATAACGCTTTCCTGAGCAAATGATTCAAGTTTAAGCTACAAAGTCAGCTACT TATAATTTCAAATTTAGACACATCAAGAATGCAAGGATTGGGTTTTCAAGAAAATCAACTTGAAGAAATCAAG
CDS sequence (LotjaGi2g1v0097600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCTCTGCACCACATTGGGGAGATGGTTGCAAAAGCATCAAAGGGTTTCCTCTCCAAGTCATAAAAGGGAGGTGGTT CATGATGTTTGCATCATTCATGATCATGTCAGTATCAGGGGCTAGCTACATGTTTAGCCTCTACTCCAGAGAAATCAAGT TTGTTCTAGGATATGATCAATCCACTCTCAATTTGTTAAGTTTCTTCAAGGACTTGGGTGCCCTCATAGGCATTCACTCA GGTGTAATAAACGAGGTCACACCTCCTTGGGTTGTTTTATCAATTGGTGGGGTTCTAAATTTTTTTGGGTATTTTATGAT TTGGCTTGCTGTGAGTAAAAAAATTACAAGACCCCACCTGTGGCACATGTGTTTATACATTATTATTGGAGGCAATTCTC ATTGCTTTACCAACACTGCAGTTATGGTGACCAGCGTAAAGAATTTCCCTGGGACCCGGGGCATTGTCTTAGGCATTGTA GGTGGGTATTTGAGTTTGAGTACAATAATCTTCACTCAACTATACTACACCTTCTTTGAAATCAACTCCAAATCTCTACT TTTACTCATGGCATGGCTACCAACTGCTACCTCTTTAATTTTCCTACCAGTTATCAAGAACCACAGGAGTATTCAACAGC CAAATGACTCCAAGGTTTTCCATAGGTTCATCTACATGATACTTGTTTTTGCAGGGTTTCTCATTGTTATAATCATTGTA CAAAAATGTTTTAACATCACCCAGAGGGAGTATTATGTCACTTCCACTGTGATGCTTCACCTGCTTACCCTTCCACTTAC TGTTGTTATTGTGGAAGAATACAAGATTTGGAAGAGCAAACAAGAACATATCAATTGTGAAAATCCTCCAAGCCCCACGG ATATAGCAGCAGCAAGAACAACAACAACAACAACAAAGCCTAATCAAGTGAAGTCTGAGCAGGCTCCTCATGCAGAACAA ACTATCCAAAACGGATTTTCCTGGTGGCAAAACATACTCAGGCCACCGAAAAGGGGTGAAGATCACACAATACTTCAAGC TATTTTTAGTCTTGATATGGTGATTCTTTTCTTAGCAACTATATTTGGGTATGGTGGCAACCTGACTGTGTTAAATAACA TGAGTCAGATAGGAAAGTCCTTAGGATATCCTGCACATACTATAACCACATTTCTCTCCCTTATGTCAATTTGGATTTTT CTCGGTAAAATTTCACAAGGGGTTATCTCAGAATTTATGATTGACAAATTTAAAGCCCCTAGGCCTCTCATGCTCACGAT ACTCCTTGTATTGTCTTGTATTGGTCACCTGTTAATTGCATTCAATGTTCCAAATGGTCTTTATGTAACATCAATTGTTA TTGGGTTTTGCTTTGGGGCAAACTGGCCAATACTTTTTTCCATCGTATCTGAATTGTTTGGTCTTAAACACTACTCAACA TTGCATAATGTTGGGACAATAGCCGTTCCAATTGGGTCATACTTTCTCAGTGTGAGGGTGGCAGGGTATCTGTATGACAA GGAAGCCATGAAGCAAATGGAAGCATTGGGGCTACAAAGAAAACCAGGAGAGGAATTGAACTGCAATGGGGGCGAGTGCT ACAAATTGGCTTTCATAATAATCACTGCAGTTTCCATGCTCGGGGCGCTTGTGTCATTCATTTTGGTGCTTAGGACTAAA CAATTCTACGAAACTGATATATACAAGAAATTCAAAGAAGAATCTCGAACTGCGGAAACTGAAATGGTTGTCCCTAGACA AGAATGA
Protein sequence (LotjaGi2g1v0097600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSAPHWGDGCKSIKGFPLQVIKGRWFMMFASFMIMSVSGASYMFSLYSREIKFVLGYDQSTLNLLSFFKDLGALIGIHS GVINEVTPPWVVLSIGGVLNFFGYFMIWLAVSKKITRPHLWHMCLYIIIGGNSHCFTNTAVMVTSVKNFPGTRGIVLGIV GGYLSLSTIIFTQLYYTFFEINSKSLLLLMAWLPTATSLIFLPVIKNHRSIQQPNDSKVFHRFIYMILVFAGFLIVIIIV QKCFNITQREYYVTSTVMLHLLTLPLTVVIVEEYKIWKSKQEHINCENPPSPTDIAAARTTTTTTKPNQVKSEQAPHAEQ TIQNGFSWWQNILRPPKRGEDHTILQAIFSLDMVILFLATIFGYGGNLTVLNNMSQIGKSLGYPAHTITTFLSLMSIWIF LGKISQGVISEFMIDKFKAPRPLMLTILLVLSCIGHLLIAFNVPNGLYVTSIVIGFCFGANWPILFSIVSELFGLKHYST LHNVGTIAVPIGSYFLSVRVAGYLYDKEAMKQMEALGLQRKPGEELNCNGGECYKLAFIIITAVSMLGALVSFILVLRTK QFYETDIYKKFKEESRTAETEMVVPRQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| PANTHER | 9 | 585 | 577 | 0.0 | – | |
| PANTHER | 9 | 585 | 577 | 0.0 | – | |
| SUPERFAMILY | 24 | 561 | 538 | 2.22E-29 | ||
| CDD | 24 | 549 | 526 | 1.75652E-101 | – | |
| Pfam | 25 | 270 | 246 | 1.5E-79 | ||
| TMHMM | 26 | 48 | 23 | - | – | |
| Phobius | 26 | 45 | 20 | - | – | |
| Phobius | 46 | 64 | 19 | - | – | |
| TMHMM | 61 | 83 | 23 | - | – | |
| Phobius | 65 | 84 | 20 | - | – | |
| Phobius | 85 | 89 | 5 | - | – | |
| TMHMM | 89 | 111 | 23 | - | – | |
| Phobius | 90 | 111 | 22 | - | – | |
| Phobius | 112 | 154 | 43 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 155 | 179 | 25 | - | – | |
| TMHMM | 156 | 178 | 23 | - | – | |
| Phobius | 180 | 184 | 5 | - | – | |
| Phobius | 185 | 202 | 18 | - | – | |
| TMHMM | 185 | 204 | 20 | - | – | |
| Phobius | 203 | 222 | 20 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 223 | 240 | 18 | - | – | |
| Phobius | 241 | 251 | 11 | - | – | |
| Phobius | 252 | 271 | 20 | - | – | |
| Phobius | 272 | 343 | 72 | - | – | |
| TMHMM | 343 | 365 | 23 | - | – | |
| Gene3D | 344 | 565 | 222 | 1.6E-14 | – | |
| Phobius | 344 | 363 | 20 | - | – | |
| Phobius | 364 | 382 | 19 | - | – | |
| TMHMM | 380 | 402 | 23 | - | – | |
| Phobius | 383 | 401 | 19 | - | – | |
| Phobius | 402 | 421 | 20 | - | – | |
| Phobius | 422 | 441 | 20 | - | – | |
| TMHMM | 423 | 442 | 20 | - | – | |
| Phobius | 442 | 446 | 5 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 447 | 469 | 23 | - | – | |
| Phobius | 470 | 480 | 11 | - | – | |
| Phobius | 481 | 505 | 25 | - | – | |
| TMHMM | 481 | 503 | 23 | - | – | |
| Phobius | 506 | 535 | 30 | - | – | |
| TMHMM | 536 | 558 | 23 | - | – | |
| Phobius | 536 | 557 | 22 | - | – | |
| Phobius | 558 | 588 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0097600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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