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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0099200 |
| Transcript ID | LotjaGi2g1v0099200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70; Found in the gene: LotjaGi2g1v0099200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32612851..32615228) extracted from Lotus japonicus Gifu genome v1.2.
GCTCAAAGGTTCTCAAAATTTATTAAATAAAACACATGAAAGAAAATCCAAACTTATATATGTGCTTTCCCACACTACTA GCATTCCAGCTCCATAAGTCTAAGCCATCCCGTGTCTCCAAATTCACGAAAATGATGTTTTGTGCACCACATCCAGGAAA TAGTTGTAAGAATTTCAAAGGCTTTGCTCTCCAAGTCCTACAAGGGAGATGGTTCATGATGTTTGCATCATTTATGATCA TGGCAGTATCAGGAGCTAGCTACATGTTCAGCCTCTACTCCAGAGAAATCAAGTTCTCTCTCGGGTATGACCAATCCACT CTCAATTTGTTAAGCTTCTTCAAGGACGTGGGTGCCTACATAGGCGTTCTCTCTGGTCTAATCAATGAGGTAACGCCTCC TTGGGTTGTGTTATCAATGGGTGCTGTTCTAAATTTTTTTGGGTTTTTCATGATTTGGCTTGCGGTGGCAAAAAAAATAG CAAATCCCCGCCTGTGGCACTTGTGCTTGTACATCGTTATTGGAAGCAATTCTCATTGTTTTACCAACACTGCAGTTATG GTGACCAGCGTAAAGAATTTCCCGGGCATCCGCGGCATTGTATTAGGCATTTTGGGTGGGTATGTAAGTTTGAGTGCAAT AATCATCACTCAATTGTACTATGCCTTCTTTATAAATGACTCCAAATCTATGATTTTGATCATGGCATGTCTACCAACAG CCACTGCTTTGATTCTCCTACCAGTTATAAAGAACCACAAGAGTATTCAACAGAAAAATGACTCCAAAGTTTTCTATAGG TTCATCTACTTGGTACTAGCTCTTGCAGGGTTCCTCATGATTATGATCATTTTGCAAATATCTTTCAACTTCACCCAGAG TGAGTATTATGCCACTACCACTGTGATGCTTCTCTTACTTACCCTTCCACTTGCTGTTGTTATTGTGGAAGACTGCAAGA TTTGGAAGAGCAAACAGGAACTTATCAATTGTGAAAATCCTCCGAGACCCGTGGATACAACAACAAAATCTAATGAATTG AAGTCTGAACAAACTATCCCTGAAGGACTTTCCTGTTGGCAAAATATTTTGAGGCACCCGGAAAGAGGTGAAGATCATAC AGTACTTCAAGCCATTTTTAGCCTTGATATGGTTATTCTTTTCTTTGCTACTGTATGTGGATTTGGTAGCAACCTGACTG TGTACAATAACTTGAGTCAGATTGGGAAGTCCTTAGGATATCCTTCATATACTATAACCACATTTGTCTCCCTTATGTCC ATTTGGATTTTTCTCGGTAAAATTGCACAAGGGGTGCTCTCAGAATTTATGATAACAAAACTGAAACTCCCTAGGCCTCT CATGTTCACGATAGTCCATGTATTGTCTTGTATTGGTCACCTTTTAATTGCTTTCAATGTTCCAAATGGTCTATACGCAG CCTCAATTTTTATTGGGTTTTGCTTGGGAGCAAGCTGGCCAATAATTAATTCCCTCATATCTGAATTGTTTGGTCTTAAA CATTACTCAACATTGTACAATGTTGGGACAGTAGCAAGTCCAATTGGGTCATACTTACTCAATGTGAAGGTCGCAGGGTA TCTGTATGACAGGGAAGCTAGAAGGCAAATGGCAGCATTGGGGCTACAAAGAAAGCCAGGAGAGGAATTGAACTGCAATG GGAGTGACTGCTACAAGTTGGCTTATATCATAATCACTGCAGTTTGCTTATTTGGGGCGCTTGTGTCATTCATTTTGGTG CTTAGGACCAGACAGTTCTACAAAACTGACATATACAAGAAATTCACAGAAGAACCTAGGACTGCTGAAACTAAAATGGT TATCCCTGGAAAAGATTGAACAACTTACTGCAACTGAAATGGTTATCTCTTACACTCACTGCAGATGTAAGGTTTTAGGG GAAACTGTGTTGTCCTTTACTAGTATAGTTTACTCGTTAATGTGTTGCGTATAAAAAATGTATTCATACCTCTTCTACTG CTACAATAGTGAGAGATAACCTCACGACACCAGGCATCAGAGCTGATGGTACGACTCTGATTACGCGTGAAGATGAGACT TACATTTAAGGGGAGATTATTGAATCTTCAAGTGTAATAAAAAATTAAAATAAATAAACATGTTCATATTGGATGAAAAA GGAAGTGCTCTACAACATATAAATGATATATACGTACCTCCTACTCAAAATGGTGTGCCCTTTGTTTTTGTAGTTAAATC TTTGTCCAATGTAGTTGGTTTATAAAAATATACGTACCTCTTACTGCAACCTCTATGAATGAGTGGAGGTTATTGTAGCG ATCTCAATTCTTATCCCCTACCACAACGTCTATTATCAAGTCATGTATTATATCTATC
CDS sequence (LotjaGi2g1v0099200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAAAATCCAAACTTATATATGTGCTTTCCCACACTACTAGCATTCCAGCTCCATAAGTCTAAGCCATCCCGTGT CTCCAAATTCACGAAAATGATGTTTTGTGCACCACATCCAGGAAATAGTTGTAAGAATTTCAAAGGCTTTGCTCTCCAAG TCCTACAAGGGAGATGGTTCATGATGTTTGCATCATTTATGATCATGGCAGTATCAGGAGCTAGCTACATGTTCAGCCTC TACTCCAGAGAAATCAAGTTCTCTCTCGGGTATGACCAATCCACTCTCAATTTGTTAAGCTTCTTCAAGGACGTGGGTGC CTACATAGGCGTTCTCTCTGGTCTAATCAATGAGGTAACGCCTCCTTGGGTTGTGTTATCAATGGGTGCTGTTCTAAATT TTTTTGGGTTTTTCATGATTTGGCTTGCGGTGGCAAAAAAAATAGCAAATCCCCGCCTGTGGCACTTGTGCTTGTACATC GTTATTGGAAGCAATTCTCATTGTTTTACCAACACTGCAGTTATGGTGACCAGCGTAAAGAATTTCCCGGGCATCCGCGG CATTGTATTAGGCATTTTGGGTGGGTATGTAAGTTTGAGTGCAATAATCATCACTCAATTGTACTATGCCTTCTTTATAA ATGACTCCAAATCTATGATTTTGATCATGGCATGTCTACCAACAGCCACTGCTTTGATTCTCCTACCAGTTATAAAGAAC CACAAGAGTATTCAACAGAAAAATGACTCCAAAGTTTTCTATAGGTTCATCTACTTGGTACTAGCTCTTGCAGGGTTCCT CATGATTATGATCATTTTGCAAATATCTTTCAACTTCACCCAGAGTGAGTATTATGCCACTACCACTGTGATGCTTCTCT TACTTACCCTTCCACTTGCTGTTGTTATTGTGGAAGACTGCAAGATTTGGAAGAGCAAACAGGAACTTATCAATTGTGAA AATCCTCCGAGACCCGTGGATACAACAACAAAATCTAATGAATTGAAGTCTGAACAAACTATCCCTGAAGGACTTTCCTG TTGGCAAAATATTTTGAGGCACCCGGAAAGAGGTGAAGATCATACAGTACTTCAAGCCATTTTTAGCCTTGATATGGTTA TTCTTTTCTTTGCTACTGTATGTGGATTTGGTAGCAACCTGACTGTGTACAATAACTTGAGTCAGATTGGGAAGTCCTTA GGATATCCTTCATATACTATAACCACATTTGTCTCCCTTATGTCCATTTGGATTTTTCTCGGTAAAATTGCACAAGGGGT GCTCTCAGAATTTATGATAACAAAACTGAAACTCCCTAGGCCTCTCATGTTCACGATAGTCCATGTATTGTCTTGTATTG GTCACCTTTTAATTGCTTTCAATGTTCCAAATGGTCTATACGCAGCCTCAATTTTTATTGGGTTTTGCTTGGGAGCAAGC TGGCCAATAATTAATTCCCTCATATCTGAATTGTTTGGTCTTAAACATTACTCAACATTGTACAATGTTGGGACAGTAGC AAGTCCAATTGGGTCATACTTACTCAATGTGAAGGTCGCAGGGTATCTGTATGACAGGGAAGCTAGAAGGCAAATGGCAG CATTGGGGCTACAAAGAAAGCCAGGAGAGGAATTGAACTGCAATGGGAGTGACTGCTACAAGTTGGCTTATATCATAATC ACTGCAGTTTGCTTATTTGGGGCGCTTGTGTCATTCATTTTGGTGCTTAGGACCAGACAGTTCTACAAAACTGACATATA CAAGAAATTCACAGAAGAACCTAGGACTGCTGAAACTAAAATGGTTATCCCTGGAAAAGATTGA
Protein sequence (LotjaGi2g1v0099200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKENPNLYMCFPTLLAFQLHKSKPSRVSKFTKMMFCAPHPGNSCKNFKGFALQVLQGRWFMMFASFMIMAVSGASYMFSL YSREIKFSLGYDQSTLNLLSFFKDVGAYIGVLSGLINEVTPPWVVLSMGAVLNFFGFFMIWLAVAKKIANPRLWHLCLYI VIGSNSHCFTNTAVMVTSVKNFPGIRGIVLGILGGYVSLSAIIITQLYYAFFINDSKSMILIMACLPTATALILLPVIKN HKSIQQKNDSKVFYRFIYLVLALAGFLMIMIILQISFNFTQSEYYATTTVMLLLLTLPLAVVIVEDCKIWKSKQELINCE NPPRPVDTTTKSNELKSEQTIPEGLSCWQNILRHPERGEDHTVLQAIFSLDMVILFFATVCGFGSNLTVYNNLSQIGKSL GYPSYTITTFVSLMSIWIFLGKIAQGVLSEFMITKLKLPRPLMFTIVHVLSCIGHLLIAFNVPNGLYAASIFIGFCLGAS WPIINSLISELFGLKHYSTLYNVGTVASPIGSYLLNVKVAGYLYDREARRQMAALGLQRKPGEELNCNGSDCYKLAYIII TAVCLFGALVSFILVLRTRQFYKTDIYKKFTEEPRTAETKMVIPGKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 58 | 58 | - | – | |
| PANTHER | 41 | 603 | 563 | 1.1E-299 | – | |
| PANTHER | 41 | 603 | 563 | 1.1E-299 | – | |
| CDD | 57 | 568 | 512 | 2.19239E-96 | – | |
| Pfam | 58 | 303 | 246 | 5.1E-78 | ||
| SUPERFAMILY | 58 | 580 | 523 | 2.09E-25 | ||
| Phobius | 59 | 78 | 20 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 79 | 97 | 19 | - | – | |
| Phobius | 98 | 117 | 20 | - | – | |
| Phobius | 118 | 122 | 5 | - | – | |
| TMHMM | 123 | 145 | 23 | - | – | |
| Phobius | 123 | 144 | 22 | - | – | |
| Phobius | 145 | 187 | 43 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 188 | 212 | 25 | - | – | |
| Phobius | 213 | 217 | 5 | - | – | |
| Phobius | 218 | 235 | 18 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 236 | 255 | 20 | - | – | |
| TMHMM | 253 | 275 | 23 | - | – | |
| Phobius | 256 | 278 | 23 | - | – | |
| Phobius | 279 | 283 | 5 | - | – | |
| Phobius | 284 | 304 | 21 | - | – | |
| TMHMM | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 362 | 58 | - | – | |
| Gene3D | 363 | 584 | 222 | 1.0E-12 | – | |
| Phobius | 363 | 390 | 28 | - | – | |
| TMHMM | 367 | 389 | 23 | - | – | |
| Phobius | 391 | 401 | 11 | - | – | |
| TMHMM | 399 | 421 | 23 | - | – | |
| Phobius | 402 | 420 | 19 | - | – | |
| Phobius | 421 | 440 | 20 | - | – | |
| Phobius | 441 | 460 | 20 | - | – | |
| TMHMM | 442 | 461 | 20 | - | – | |
| Phobius | 461 | 465 | 5 | - | – | |
| Phobius | 466 | 488 | 23 | - | – | |
| TMHMM | 466 | 488 | 23 | - | – | |
| Phobius | 489 | 499 | 11 | - | – | |
| Phobius | 500 | 524 | 25 | - | – | |
| TMHMM | 500 | 522 | 23 | - | – | |
| Phobius | 525 | 554 | 30 | - | – | |
| Phobius | 555 | 576 | 22 | - | – | |
| TMHMM | 555 | 577 | 23 | - | – | |
| Phobius | 577 | 607 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0099200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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