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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0099600 |
| Transcript ID | LotjaGi2g1v0099600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nodulin-like / Major Facilitator Superfamily protein; TAIR: AT2G39210.1 Major facilitator superfamily protein; Swiss-Prot: sp|F4I9E1|NFD4_ARATH Protein NUCLEAR FUSION DEFECTIVE 4; TrEMBL-Plants: tr|O81120|O81120_LOTJA Nodule-specific protein Nlj70; Found in the gene: LotjaGi2g1v0099600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32889190..32891892) extracted from Lotus japonicus Gifu genome v1.2.
GCTCAAAGGTTCTCAAAATTTATTAAATAAAACACATGAAAGAAAATCCAAACTTATTTATGTACTTTCCCACACTACCA GCATTCCAGCTCCATAAGTCTAAGCCATCCCGTGTCTTCTTTATTAACTTGCTAGCTATATCTTGAAACTTAGAAAATGA TGTTTTGTGCACCACATCCAGAAAACGGTTGCAAAAACGTTAAAGGCTTTGCTCTCCAAGTCCTACAAGGGAGATGGTTC ATGATGCTTGCATCATTTATGATCATGGCAGTATCAGGAGCTAGCTACATGTTCAGCCTCTACTCCAGAGAAATCAAGTT CGCTCTCGGGTATGACCAATCCACTCTCAATTTGTTAAGCTTCTTCAAGGACGTGGGTTCCAACATAGGCATTCTCTCTG GTCTAATCAATGAGGTAACGCCTCCTTGGGTTGTGTTATCAATGGGTGCTGTTCTAAATTTTTTTGGGTTTTTCATGATT TGGCTTGCTGTGGCCAAAAAAATTGCAAATCCCCGCGTGTGGCACCTGTGCTTGTACATCGTTATTGGAAGCAATTCTCA TTGTTTTACCAACACTGCAGTTATGGTGACCAGCGTAAAGAATTTCCCGGGCATCCGCGGCATTGTATTAGGCATTTTGG GTGGGTATCTTAGTTTGAGTGCAATAATCATCACTCAACTGTACTATGCCTTCTTTATAAATGACTCCCAATCTATGATT TTGATCATGGCATGTCTACCAACAGCTACTGCTTTGATTCTCCTACCAGTTATAAAGAACAACAAGAGTATTCAACAGAA AAATGACTCCAAAGTTTTCTATAGGTTCACCTACTTGGTACTAGCTCTTGCAGGGTTCCTCATGATTATGATCATTTTGC AAATATCTTTCAACTTCACCCAGAGTGAGTATTATGCCACTACCACTGTGATGCTTCTCTTGTTTACCCTTCCACTTGCT GTTGTTATTGTGGAAGACTGCAAGATTTGGAAGAGCAAACAGGAACTTAACAATTGTGAAAATCCTCGGAGACCCGTGGA TATAACAACAAAATCTAATGAATTGAAGTCTGAACAAACTATCCCCTAAAGGACTTTCCTGTTGGAAAAATATTTTGAGG CACCCAGAAAGAGGTGAGGATCATACAGTACTTCAAGCCATTTTTAGCCTTGATATGGTTATTCTTTTCTTTGCTACTGT ATGTGGATTTGGTAGCAACCTGACTTTGTACAATAACTTGAGTCAGATTGGGAAGTCCTTAGGATATCCTGCATATACTA TAACCACATTTGTCTCCCTTATGTCCATTTGGATTTTTCTCGGTAAAATTGCACAAGGGGTGCTCTCAGAATTTATGATA ACAAAACTGAAACTCCCTAGGCCTCTCATGTTCACGATTGTCCATGTATTGTCTTGTATTGGTCACCTTTTAATTGCTTT CAATGTTCCAAATGGTCTATACGCAGCCTCAATTGTTATTGGGTTTTGCTATGGAGCAAGCTGGCCAATAATTAATTCCA TCATATCTGAATTGTTTAGTCTTAAACATTACTCAACATTGTACAATGTTGGGACAGTAGCAAGTCCAATTGGGTCATAC TTACTCAATGTGAAGGTCGCAGGGTATCTGTATGACAGGGAGGCTAGAAGGCAAATGGCAGCATTGGGGCTACAAAGAAA GCCAGGAGAGGAATTGAACTGCAATGGGAGTGACTGCTACAAATTGGCTTATATCATAATCACTGCAGTTTGCTTATTTG GGGCGCTTGTGTCATTCATTTTGGTGCTTAGGACCAGACAGTTCTACAAAACTGACATATACAAGAAATTCACAGAAGAA CCTAGGACTGCTGAAACTAAAATGGTTATCCCTGGAAAAGATTGAACAACTTACTGCAACTGAAATGGTTATCTCTTACA CTCACTGCAGATGTAAGGTTTTAGGGGAAACTGTGTTGTCCTTTACTAGTATAGTTTACTCGTTAATGTGTTGCGTATAA AAAATGTATTCATACCTCTTCTACTGCTACAATAGTGAGAGATAACCTCACGACACCAGGCATCAGAGCTGATGGTACGT GTCTGATTACCCGTGCAGATGAGACTTACATTTAAGGGGAGATTATTGAAGCTTCAAGTGTAATAAAAAATAAAAGTGAA TAAACAAGTTCATATCGGATGAAAAAGAAAGTGCTCTACAATAAATGATAGAGCTCATACTCAAAATGGTGTGACGTCCT TTGTTTGTGTAGTTAAATCTTTGTCCAATGTAGTTTGTATATAAAAATATATACATACCACCGACCGCAGCCTCTATGAA AGAGTGGAGGTTATTGTAGCAATCTCAGTTCTTATCCCCTACCACAACCTCTAATTTACCTTTTTTTCTAGTTTCTATAT TTATGACATCAAGTCATGTATTATATCTATCATTTCGCTTCTTTTAAAACTACTTATTTAAAACGTATACACTCATAGGG CCTGCATCAAAATGGTTCCTAACTTCTTGCGGCTATGTTTCTTTTTCTATCGAAAGGCCTCATTTAGCCTTAACCCTGAC TCCAACGCTAACTTGTATTAGTTAGCATTGGTTAAATCAAAGAAAAATTCATTTTAGATGTCAAAACTTAAAAGTCCTCC ACTTAAAGTTAGATTCGGCCTAGCAACTTTACTTAGCATTAACTTTCCTTGAATTCGAGTCGG
CDS sequence (LotjaGi2g1v0099600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTTTGTGCACCACATCCAGAAAACGGTTGCAAAAACGTTAAAGGCTTTGCTCTCCAAGTCCTACAAGGGAGATG GTTCATGATGCTTGCATCATTTATGATCATGGCAGTATCAGGAGCTAGCTACATGTTCAGCCTCTACTCCAGAGAAATCA AGTTCGCTCTCGGGTATGACCAATCCACTCTCAATTTGTTAAGCTTCTTCAAGGACGTGGGTTCCAACATAGGCATTCTC TCTGGTCTAATCAATGAGGTAACGCCTCCTTGGGTTGTGTTATCAATGGGTGCTGTTCTAAATTTTTTTGGGTTTTTCAT GATTTGGCTTGCTGTGGCCAAAAAAATTGCAAATCCCCGCGTGTGGCACCTGTGCTTGTACATCGTTATTGGAAGCAATT CTCATTGTTTTACCAACACTGCAGTTATGGTGACCAGCGTAAAGAATTTCCCGGGCATCCGCGGCATTGTATTAGGCATT TTGGGTGGGTATCTTAGTTTGAGTGCAATAATCATCACTCAACTGTACTATGCCTTCTTTATAAATGACTCCCAATCTAT GATTTTGATCATGGCATGTCTACCAACAGCTACTGCTTTGATTCTCCTACCAGTTATAAAGAACAACAAGAGTATTCAAC AGAAAAATGACTCCAAAGTTTTCTATAGGTTCACCTACTTGGTACTAGCTCTTGCAGGGTTCCTCATGATTATGATCATT TTGCAAATATCTTTCAACTTCACCCAGAGTGAGTATTATGCCACTACCACTGTGATGCTTCTCTTGTTTACCCTTCCACT TGCTGTTGTTATTGTGGAAGACTGCAAGATTTGGAAGAGCAAACAGGAACTTAACAATTGTGAAAATCCTCGGAGACCCG TGGATATAACAACAAAATCTAATGAATTGAAGTCTGAACAAACTATCCCCTAA
Protein sequence (LotjaGi2g1v0099600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFCAPHPENGCKNVKGFALQVLQGRWFMMLASFMIMAVSGASYMFSLYSREIKFALGYDQSTLNLLSFFKDVGSNIGIL SGLINEVTPPWVVLSMGAVLNFFGFFMIWLAVAKKIANPRVWHLCLYIVIGSNSHCFTNTAVMVTSVKNFPGIRGIVLGI LGGYLSLSAIIITQLYYAFFINDSQSMILIMACLPTATALILLPVIKNNKSIQQKNDSKVFYRFTYLVLALAGFLMIMII LQISFNFTQSEYYATTTVMLLLFTLPLAVVIVEDCKIWKSKQELNNCENPRRPVDITTKSNELKSEQTIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 9 | 304 | 296 | 2.9E-149 | – | |
| PANTHER | 9 | 304 | 296 | 2.9E-149 | – | |
| SUPERFAMILY | 25 | 268 | 244 | 2.22E-8 | ||
| CDD | 25 | 240 | 216 | 2.576E-51 | – | |
| Pfam | 26 | 271 | 246 | 3.9E-78 | ||
| TMHMM | 27 | 49 | 23 | - | – | |
| Phobius | 27 | 46 | 20 | - | – | |
| Phobius | 47 | 65 | 19 | - | – | |
| Phobius | 66 | 85 | 20 | - | – | |
| Phobius | 86 | 90 | 5 | - | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 91 | 112 | 22 | - | – | |
| Phobius | 113 | 155 | 43 | - | – | |
| TMHMM | 155 | 177 | 23 | - | – | |
| Phobius | 156 | 180 | 25 | - | – | |
| Phobius | 181 | 185 | 5 | - | – | |
| Phobius | 186 | 206 | 21 | - | – | |
| TMHMM | 187 | 206 | 20 | - | – | |
| Phobius | 207 | 225 | 19 | - | – | |
| Phobius | 226 | 247 | 22 | - | – | |
| TMHMM | 226 | 248 | 23 | - | – | |
| Phobius | 248 | 252 | 5 | - | – | |
| TMHMM | 253 | 272 | 20 | - | – | |
| Phobius | 253 | 272 | 20 | - | – | |
| Phobius | 273 | 310 | 38 | - | – | |
| MobiDBLite | 289 | 310 | 22 | - | – | |
| MobiDBLite | 291 | 310 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0099600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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