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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0101200 |
| Transcript ID | LotjaGi2g1v0101200.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor 1-alpha; TAIR: AT1G07920.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|P0DH99|EF1A1_ARATH Elongation factor 1-alpha 1; TrEMBL-Plants: tr|A0A176WLX9|A0A176WLX9_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0101200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:33637930..33638560) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTAAGGAAAAGTTTCACATCAACATTGTAGTCATTGGCCATGTTGACTCTGGGAAGTCAACAACCACTGGCCACTT GATCTACAAGCTTGGAGGAATCGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACACAGGGATTTTATTAAGAATATGATTACTGGGACATC CCAAGCTGACTGTGCTGTGCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCAGGTATTTCCAAGGATGGACAGACTC GTGAACATGCTCTTCTAGCTTTTACTCTTGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGGTATTTGATGTTCAAGCT TTTGCTTCCTTGAGCCACCCTGCACTCTTGTTAAATATATTTCATTATTTTAATAGTTGAGTCATTATATTGCTAACTGT GTTTCTTTCTTTGAGACAGATGGATGCTACTACACCCAAGTACTCAAAGTCCAGATTTGATGAAATTGTGA
CDS sequence (LotjaGi2g1v0101200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAAGGAAAAGTTTCACATCAACATTGTAGTCATTGGCCATGTTGACTCTGGGAAGTCAACAACCACTGGCCACTT GATCTACAAGCTTGGAGGAATCGACAAGCGTGTTATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCAT TCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGAATCACAATTGATATTGCCCTGTGGAAGTTT GAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACACAGGGATTTTATTAAGAATATGATTACTGGGACATC CCAAGCTGACTGTGCTGTGCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCAGGTATTTCCAAGGATGGACAGACTC GTGAACATGCTCTTCTAGCTTTTACTCTTGGTGTGAAGCAGATGATCTGTTGCTGTAACAAGACAGATGGATGCTACTAC ACCCAAGTACTCAAAGTCCAGATTTGA
Protein sequence (LotjaGi2g1v0101200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKF ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKTDGCYY TQVLKVQI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 156 | 156 | 2.9E-119 | – | |
| PANTHER | 1 | 156 | 156 | 2.9E-119 | – | |
| Gene3D | 1 | 167 | 167 | 1.1E-66 | – | |
| SUPERFAMILY | 3 | 160 | 158 | 7.72E-59 | ||
| ProSiteProfiles | 5 | 168 | 164 | 48.981 | ||
| Pfam | 7 | 158 | 152 | 8.0E-46 | ||
| PRINTS | 9 | 22 | 14 | 2.9E-24 | ||
| ProSitePatterns | 61 | 76 | 16 | - | ||
| PRINTS | 68 | 76 | 9 | 2.9E-24 | ||
| PRINTS | 88 | 98 | 11 | 2.9E-24 | ||
| PRINTS | 104 | 115 | 12 | 2.9E-24 | ||
| PRINTS | 148 | 157 | 10 | 2.9E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0101200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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