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LotjaGi2g1v0104500.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0104500
Transcript ID	LotjaGi2g1v0104500.1
Lotus japonicus genome version	Gifu v1.2
Description	Ethylene-responsive transcription factor; TAIR: AT5G13330.1 related to AP2 6l; Swiss-Prot: sp\|Q9LYU3\|EF113_ARATH Ethylene-responsive transcription factor ERF113; TrEMBL-Plants: tr\|V7C0M5\|V7C0M5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0104500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:34994466..34996640) extracted from Lotus japonicus Gifu genome v1.2.

GTCAAATCTGTCTTTAACGTGTAGCTATGGCACCTCTAGAAGCAAGTCCATGTTATCTTGTTCTTTCCTTTCATGATGCT TTTTTTTATCATTGTCTCTTTCTCATTTAAAAGATATTAACAAGCAAACAGAATCCCCCTCTTTTGATCATGGTTTCATT CATCATTAAACCAATGATCCTCCTTTTTTAGAAATCTTAGATCTGCTTTTTATCAAGCTGTTGGTGGTTATCTCATCAAC AAAAGATTTAAATTCAAGAGTAGAAGCACCTGTTAGAGATAGTGTTAGGCAAGGTGGATCGAAGGCAAGGAAAAAGGTCT CTCTCCCTCTCTTCTGATCATCTATCAGAAGAGAAAAGAGAAGGTTTCAATTTTCCTGTTTACCTATCATCATCTGAGAA TCTAAAGGAAGAAGCTTCACCATCACCGTTTTCTCATCTTATTATGAACACCAGCAATAGAAGCACCCTCTTTCCAATTC CAGAAGGGAAAATAAGCACTTCTGATCATCAATTTGTTGAGGGGCAGGACTCATCTAAGTTTATACTTCAAGGTAAACTA CTAACAGGTTCATTTCCTTACAGTTTCCATTATCTTGACTCAGGATCTCATGAATTTGTTTTATTCGTTTTTGAAATTCA AAAGTAGTCTATATACTTGTATAAGGATATTTTCTGCACTACAAAAGATAATTTCACCAATAACATGAGTGCAACTAACA TGATATATTCTCTTAATGAAAGTCAAGATAAGCAGCTAACCCAAAAGAAGTTTTTTTTTTTTTTTTTTTTCATCACAAAT ATCTGCATTTGTTTCACATTGCATTCATATCTAGATATCTCCCAATCTGGGTGGAAATGACATTTCCATTATCATTATTG GTAGCACTATCTCAAGCTTGTGTCTATCTTGTTCAAGATGTTGACTGTTTCAGTGTACATTAATTTCCACTGACTTATCT TTTCCATTTCCCCTGACACTTTAATTTTCTAACAAGGGTTTGAAGCATTCATACTAGCTCACTTATTCTTTTATTTTATT TTCATCATCATTTTTTTTAACTCTTTCCTCTTTTACTTATAACAAAATCTATTGCATCTTAGGAGGGAAAACCGCCTAGT CATAAAAGTAAAAAGAATCTGCTTGTGTTTATCATAATTTTAGCTTCATTGTAAATCCAAACATCTACTATATCTCCCAT TTCTTGGTCTCATTGGCGGTAGATTTGAAGTGTTGATTAGTTATTTATTTTTCTCAAAAATATTACATTTAACTTAGACT TAAATGCGATTGTACCTGTCTTGAAGGCAATGAAAGGAAAAAACACTATAGAGGTGTGAGGCAGAGACCTTGGGGAAAAT GGGCTGCTGAAATTAGAGACCCTAAAAAAGCAGCAAGAGTGTGGCTTGGGACGTTTGATACAGCAGAGGCTGCAGCAACC GCTTATGATACTGCAGCATTGAAGTTTAAAGGAAACAAAGCCAAGCTCAATTTCCCTGAACGTGTTGCTAATTTGCTACC ACCCTCATCACCACCACCTAACAATGTTGCTTCAGCTTCAGCAGCTTCTTCACAATCATCACTCCAAAAAAATCCCCCAC TATTATCATCTTCTGAAGAAGGATTTCCGAACCTAATGCAGTACGCGAGGGTTCTTTGTAGCAGGGATGATGAAGATCTT CAACGCGCTGCATCAGGTCTTTATAACTATCATCATAACAATGAGCAATCAGTTTATGATTCACCGGTACCGTTTTTCTC AACACCAGCAGCAATGCCTTCTTCAAGTTCTAAGGATGTTGTGTCGCCTGGTCAATATCAAATTGGAGATTTTGGTTCTT ATTTTTGTAATAAAGGTAGTTTCGATGAAAGAAACACGAGGGGGACATAGTTTCTATCTGAATTCTGCTAAGTGCATGCA CTTGGGGAGACGGCAAGCATACGAGATCTTTATTTTTTCTGATTTTTATCTCACATTCATGTTTTTTACTCCCACTTTAC CGGTTGCTTCTCTTGACTCCCACATGTATACGGGGATATGAGGAACTACATGAAGTGTGAAACAATAATTTTTTGTTTTT TGGGGTGAGATAAATATAAGGTGGGACAATTATTTTCTTCTTAAAATGGAACACCTCTTCACCCTATATTTATCAGAATT AAAAAAATTACCAAT

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0104500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACACCAGCAATAGAAGCACCCTCTTTCCAATTCCAGAAGGGAAAATAAGCACTTCTGATCATCAATTTGTTGAGGG GCAGGACTCATCTAAGTTTATACTTCAAGGCAATGAAAGGAAAAAACACTATAGAGGTGTGAGGCAGAGACCTTGGGGAA AATGGGCTGCTGAAATTAGAGACCCTAAAAAAGCAGCAAGAGTGTGGCTTGGGACGTTTGATACAGCAGAGGCTGCAGCA ACCGCTTATGATACTGCAGCATTGAAGTTTAAAGGAAACAAAGCCAAGCTCAATTTCCCTGAACGTGTTGCTAATTTGCT ACCACCCTCATCACCACCACCTAACAATGTTGCTTCAGCTTCAGCAGCTTCTTCACAATCATCACTCCAAAAAAATCCCC CACTATTATCATCTTCTGAAGAAGGATTTCCGAACCTAATGCAGTACGCGAGGGTTCTTTGTAGCAGGGATGATGAAGAT CTTCAACGCGCTGCATCAGGTCTTTATAACTATCATCATAACAATGAGCAATCAGTTTATGATTCACCGGTACCGTTTTT CTCAACACCAGCAGCAATGCCTTCTTCAAGTTCTAAGGATGTTGTGTCGCCTGGTCAATATCAAATTGGAGATTTTGGTT CTTATTTTTGTAATAAAGGTAGTTTCGATGAAAGAAACACGAGGGGGACATAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0104500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNTSNRSTLFPIPEGKISTSDHQFVEGQDSSKFILQGNERKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAA TAYDTAALKFKGNKAKLNFPERVANLLPPSSPPPNNVASASAASSQSSLQKNPPLLSSSEEGFPNLMQYARVLCSRDDED LQRAASGLYNYHHNNEQSVYDSPVPFFSTPAAMPSSSSKDVVSPGQYQIGDFGSYFCNKGSFDERNTRGT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31190:SF167 View details on PTHR31190:SF167 Search for proteins/transripts with this domain View external data on PTHR31190:SF167	26	166	141	2.2E-58	–
PANTHER	PTHR31190 View details on PTHR31190 Search for proteins/transripts with this domain View external data on PTHR31190	26	166	141	2.2E-58	–
Gene3D	G3DSA:3.30.730.10 View details on G3DSA:3.30.730.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.730.10	42	103	62	9.0E-32	IPR036955 Show description in modal box View details on IPR036955 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00018 View details on cd00018 Search for proteins/transripts with this domain View external data on cd00018	42	101	60	9.38696E-18	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54171 View details on SSF54171 Search for proteins/transripts with this domain View external data on SSF54171	43	101	59	1.37E-22	IPR016177 Show description in modal box View details on IPR016177 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00380 View details on SM00380 Search for proteins/transripts with this domain View external data on SM00380	43	106	64	1.3E-37	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51032 View details on PS51032 Search for proteins/transripts with this domain View external data on PS51032	43	100	58	25.251	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00847 View details on PF00847 Search for proteins/transripts with this domain View external data on PF00847	43	92	50	1.0E-12	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00367 View details on PR00367 Search for proteins/transripts with this domain View external data on PR00367	44	55	12	1.2E-11	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
PRINTS	PR00367 View details on PR00367 Search for proteins/transripts with this domain View external data on PR00367	66	82	17	1.2E-11	IPR001471 Show description in modal box View details on IPR001471 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	104	141	38	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	116	141	26	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676
GO:0003700 View details of GO:0003700 AmiGO InterPro QuickGO	Molecular function	DNA-binding transcription factor activity	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.	Subterm of View details of GO:0140110
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0104500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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