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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0115400 |
| Transcript ID | LotjaGi2g1v0115400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|K7MHP3|K7MHP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:42620088..42626177) extracted from Lotus japonicus Gifu genome v1.2.
GATTAAGAGGATTGTAAATGGACCAAGGAGCCATGAAACTCTCTGACACAGGGTAGAAAGATAGAGTGAGGATAGAGATA GATAGACCATGAAGGCATGAAACACAGTCAATTGCATGAAACAAAGACCAATTCATGTCACTGTGAACCGAACCAAAGAT GCCATTGATTCTTTGTCCCTGTAAGTCCCTTTCCTTTTGCTTTTTCAAGAAGAAAATACCAAATACGAAACTTCCACCCC AAAAATTTTGCGCTTTTACTAATAAATTTGCAATTTTGGGCACTACCCATGTTGCATTTGGCTCAAGAAATGGGGAACTT TTTTTGGGGAACGAGTTGTCTCAAGAGGCCGTTGATGTAAGAATCCCAGAGCAAGAAACGCTTGAGTTGCTGAACAAGCC TTCACTGGTTCCCATTAGAAATGGGTCGTTTCCTGAAATTGAGGTGGAGACAGAGAAAGCTTCCATTGAGGTAAAGGGAG ATGATGGGGTATTGGAAGTTTCTGAGGAAAGAGATGAAATGGGTGTTGATGAAAATGAAGAAGAAGAAGAAGGGGCTAAG AAGGTGAACAATGCTGAGTACTATGAGCCCAAGCCTGGGGATTTTGTGTTTGGTGTTGTTGTTTCAGGTAATGCAAACAG GCTCAATGTCAATGTGGGAGCTGAGTTACCAGGGACATTGTTGACTAAGGAGGTGCTTCCCTTGAACAGTAATGAAATGG AGTACTTGATATGTGATGGGAATAAGAAATGTGAAAAGAATTTTATGGCACATGGGAGGATGGGAATTCTGAAGAATGAT GAAGATGATGATGATGCAATAAATGGGGTGATGGTGGTGCCGGTAGGAAACACTGTTGTTGAGATTGGGACCATTTTGTT TGCTGAGGTTTTGGGTAGAACACTAACTGGTAGGCCATTGCTCTCTACTAGAAAGCTCTTCCGCCGGATCGCTTGGCATC GACTGAGGCAGGTTTTCCTCTTTCTTTCATTTCTTTTGTAGTAATGTTAAAATACCTTTACCTAGCATGAGTTTTTGTGA ATTGATAATTATTTTAATATGTCTTGAGCCTTTTATTGGTTTTAGCTGACTGGTCATACAAGAATTTTTCCCTTGCATAT GATTAGGGTGAGCAGAAATTTCTGTGACCAAAACCAATTGTTTGCGCGAAATTGGATTGAACCACCAATAACCAATACAT TTTCTTAATCCATTTATTTATAATCACAAATCAATATGCTCCCGTTTGGATGCGGAGTTATAGGAGATTATTAGAGCTTA TCTACTAGAAAAAACACCAAATATGCTCCAATAAGTTCTGTTTGGTTTCATCCAAACGGATTGATGGTTTGATTATTACA TATCCAGATCAATGAGCCAGTAATAACCAAATTGAACAGTTTGATTTAAAAACTATGAATTCATTAACTTTCTTCAACTG TGCAAAAACCCCAAACTGTGGTTGCAATACCTTCAAATGCCCTGTTTGCAGTTTCTCTCTTAGTTTTCGGATTTCATTTT CAATGGCATTGTTCCTAGCTTATGGATTCTCTTCTATTCATTGGTTGTTTGAAGCTCGTGGACTCATCAAAATCATCCAG AACAATGAAGTGGTTTTGAACTTTGCTTTTTTTATTAGTAAAAGTTCAGCATGTAATAACAAGCAGTGGTGTGTCAAGGT AGAATGATGTTGAACTTGCAAATTTGCCTCTTTCTGAAGTAGGTATTAATGTATTATAGATCAGGGATTTGGAAAAAGAA AGAGTAGCTTCAAACCAAAATTTCAATGTTGTAGCTTTAACAACTGTGTTCTTCATATTAGCTTTTCAGGAAATTTGGAT GAGATATAATTCGAGGAAAATAAAACAGATTGTCAACCATAAAGTACTGTCTAAATGATTCCGGTGCCAATTGCTGTTAA CCTATCATCTGAATTGAGAAAGTCCAAGTTTTATGAAAAACATTTGCAGTTTAGTTCAACTCAATTTAGTTTTTCTGCCA AACTAAAGCATAGCCACCCATAATATTTAGAATAGTAGATATGGCAACTTTAATGTAGAATTTGTGATTAAGATGCAAAT GCATAGTTCTCCTCGCTACTTAGTTGGAAACTAGGAAGCATAGATATGTCAAATGCATGAATATGACATGACACAGACAA AAAGAAACAGAAAATTTTAAAACTACAGGACACAACATATAAAGCAAATAGAAAGCTAACATAAAAAAATTTAAATGACA GAGACATTGTAGACACGATAGAATACTATCGTTTATCTAATTATGGTACCTTATCCAATATCCATATTAGTACAAAAATT GAAAATATAAATGTAAAAAATTGAAATGTCTGTGCTTCCTAATTTAGAAGGGTTATTATCTTATACAGATAAAGTAGGCA GATTTAGTTATGGCCAGTAAGGAACTAGATTATTTCTTCAATCAACTTTAACATGTACAAAGTCAAATAATCTCTTCTCT TGCTGATGAGTTTTTAAATCTTCTTCTTTGAATGTTTTGGGCAGATAAAACAGCTCAATGAACCTATAATGATTAGAGTC ACCGAGTGGAATATTAGCGGCCTGCTAACAAGGATTGAGGTATGTGCCATTGACATTAATATTTTATGCTCATGTAGCAT TTGAGTAAATACTTATCTCTTCTTGAATTTGGATCTGCAGGGTATGCGAGCTTTCCTACCCAAAGCTGAGCTTGTAAAAA GAGTAAATAGCTTTACTGAATTGAAAGAAAATGTAAGTTTCAGCCCTGGAATTCCCCCCCCCCCCCCATACAGAATAAAG TACAATACAATCTTATTTTTGAACTTGAGCTTTATTTGAATTTTGACACTCAATGTTTGAATTCTCTGTGCTATTGCGTG GATCAGCACATAACAGTATTTAAAACTTCATTGATGTGGGCAGTGCCATTGGGCTTTATTAACAAGTTGTGCTGCTCCAT TCTCCTTGAGTGTGGTCAACAGAAGCTTATGATCTATCCGGTTAATTTTATTGTTGCTTTTAATTGAAAGCCTTATCTTT TCAAGTTTTAGGCCTTTTACATGCCTTATAGTCTCAGGCTTATATTGTTATATGCATACAACCACACACACACATACATG TCCACCAATCTATTCAAATTCTTATGTCTTGCACCCTTATGACTTATGAGTTTTTACCAGGGAAGTATATATAGTTTATT TTCAATCCTAGTTGTTTGTTAAACTACCTCAACCTTTGTCTACTTAGAAGTATATTTTCCTTTCTTATATTCGAGTTTCT AATCGGTATCCTTGAGTTTTGTCATGAATTGAAAATCACAATAGTTTAAGCTATCAGTTGAAAGAATATGAATGGTTTTA AAACAAACGCACCCTTTGACGCAAGTATGGACGGTGGCATGCCCATCGGACGTGTTAAAATTAACCTTCTTTTATTTAGA AAATTATGGGGCCAGGCGGCCAGCCCAGCAAGCATTGAACTTATGACCGCTCGGTCCACAGGCTCTACTACTATGTTAGC AACTAACAATCCCAAAACCTTAAGATGTTGTGTTTTCGCATGAATGGTTTAATATCTATCATAGTTGAGCAGATATGCTG CTTCTTCACCACTCACTGTTAGTTTTCATTTTTCTCTTTCTTACTTATTGCAATTATTTAAATATAAATATATATGATGC AGGTCGGATGTTGTATGTATGTACAAATTACTGAAGTAGATGAAGCTAAAAACAATGTGATAGTTAGTGAGAGAGAAGCC TGGGTCAGTACTCAAATCTGTCTATTTCCTTTGCTGCTTAGTTTCAATATTTCAGTTAGAGAGCTTTTAGTTTACTTTCT CCTTTTAATATTTTTAAATTCCCGCAATATTATATTGCAGGAAAAGCTTTATCTTCGAGAAGGAACACTTCTTGAAGGGA CCGTGAAAAAGGTTCTTCCTTATGGAGCCCAAATAAGAATAGGAGAAACAAATAGATGGTGAGTGATGGTTCTTTTTCCC TCTTTGGTAAGTGATAATTTTTTTCAAAAGAAGTCACGTAGATGCAATTTTTATTTACATGGAACAATTCCATCTTGGAG TATCTTTGGATACTTGAATGCTTCCAACTTCACCGCTTTGTTTTGCCCCTTGTGATGAAAAGAAAAGTCAATGCAGGTTG GTCCTACAAATGACTGATAGAAAAGATAGAAAAACAAACTAGCTAATACATGCTTTTCAATGGTGTAACCGATTTATGAA TCACCTTTCAAATTGATGGAATCACGTGAGCCTGCTTTAACTCTGTTGAGATATATTCAGATGCATTCTGTTATGATAGA TTACTGTTATAATTATGTCATTATAGATTAAGATAAATATATGGTTATTATTCTGTATAAATGAATTTATCAAATGTAAG GGGCATCAATCCTTGTTAAATCAGAATTTTTTTTTATTCCGTTATTTTTTTTTTTAAATGCTCAATATGCACTTACCTTC CTTTTTCATTTATGGAAAATGTCATGCCTTCCGAGATTCAGGCTTGGCTGTTTTGTCAGTAAGTGGATATACTTTATTAT TTTCTTCTTGTTACTATCTTCAAGACTTTTTAATCTGCTTCATAAGTTAAAGTTGTTAAATATCGTCAAAATGTTTGTAT ATATAATCAACATTTAAAATTAATCTGAAACTTTTCAGTGGATTGCTGCATGTTTCAAATATCACTCGAGGGGGAGTTAC ATCTGGCAGCGACATACTTTCTGTTGATGAAAAGGTTAAAGTTCTGGTGGTGAAATCGGCATTTCCTGGTAAAATTTCTT TAAGGTAAGAATTGCTGACTTTGACTTTCTTCTGTAATTGTTGGGTGCACTTTGTTTGTTACTGTCGATTTGGGTTATTT AGGGAATAAAGAATAAACCTTCCTAGCTAATTAAGGTTCCAACTACCCTCCCCACTTACAAGTTACAACACAAATACTCC TAAAAAAATTAGGTACCATCAACAAGGTCAGATTATCCAAAAACGTTATAATAATGCTTTATCCTTTGACTCATTCATTT AACTGAGTTTTTTGCAACTACAAATAACTGAACTTTTCTTGAAGTGGAGTGTGCTTAACTTAACAGCCCTAACATTTATT TTTTCCTTACCAGTCAACATGTTGTTTAACCCTTTCCCTTACCCTTTCCCTTAAAATTTTGTATTAAAGAACATTGAATG TTATAAATTGCTGTTGATGTCTATTTGCATTCATGTCATGCAGCATCAGGGACCTTGAAAGTGAACCTGGCCTATTTCTA TCAAATAGAGAGGTATTTAATTATTTTATCTTATTTTTCAAGTTCTTCGGTTTTAGTGAGTCAGATTGATCTTGAGTAAT GCTTGTTTCTTCTGTCAAAAGAGAGTATTTCTGGAGGCAGATATGATGGCCAAAAAATACAAGGAAAAACTACCTCCTGC TCTTACCAGTCAACAATCAAAATCAGTTTCAAACAGTGCCCTGCCTTTCGAAAACGAAGCACTTTATGCTAATTGGAAGT GGTTCAAGTTTGAGAAATAGTGATGAAACAAATGAACCTTGAAAGCATAAAGTTATTGATGGGCAAGTTCCATTGAGAGA ACTTGACATTATATGGACTATGGAACACCCAGTTCCAAGACAGAGGGGACCTTCTTTCACAGACAACATTCTGAGCCTCA AAATGGAAGTTTCTGATTCCTTTACGAATTGATTTGGCATGCAACCCAGAGCGCATACAGCTGGGATGTCCTTTTTTTCT TTCTTGTTTATTGAATTCTGCTTGTCATTTTACATGTAGGTCCATGTAGCTGCATGTAAGTCTGTAATTTTTATGATTAC AGTTTGCTTCAACTTTGATGCTTTTATGTTTTTACTTTTATAAGGCTTTGTACCACATGTATTGCTAATTTTGAGGCAGT AAGTGATGTTCCAAGAAGTGGAATCATCCGTTTGTAGCTTAAAATAATGAGTAAACCTTTATTTTATGTCAACACTCGAC TGGATTACATGGAGAATAATATTCAAACACTTCGATTATGTAAACTCTTTTGATTACTTTGATTATATTACGTCATTTGA TTTGCTTCTC
CDS sequence (LotjaGi2g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATTGATTCTTTGTCCCTGTAAGTCCCTTTCCTTTTGCTTTTTCAAGAAGAAAATACCAAATACGAAACTTCCACC CCAAAAATTTTGCGCTTTTACTAATAAATTTGCAATTTTGGGCACTACCCATGTTGCATTTGGCTCAAGAAATGGGGAAC TTTTTTTGGGGAACGAGTTGTCTCAAGAGGCCGTTGATGTAAGAATCCCAGAGCAAGAAACGCTTGAGTTGCTGAACAAG CCTTCACTGGTTCCCATTAGAAATGGGTCGTTTCCTGAAATTGAGGTGGAGACAGAGAAAGCTTCCATTGAGGTAAAGGG AGATGATGGGGTATTGGAAGTTTCTGAGGAAAGAGATGAAATGGGTGTTGATGAAAATGAAGAAGAAGAAGAAGGGGCTA AGAAGGTGAACAATGCTGAGTACTATGAGCCCAAGCCTGGGGATTTTGTGTTTGGTGTTGTTGTTTCAGGTAATGCAAAC AGGCTCAATGTCAATGTGGGAGCTGAGTTACCAGGGACATTGTTGACTAAGGAGGTGCTTCCCTTGAACAGTAATGAAAT GGAGTACTTGATATGTGATGGGAATAAGAAATGTGAAAAGAATTTTATGGCACATGGGAGGATGGGAATTCTGAAGAATG ATGAAGATGATGATGATGCAATAAATGGGGTGATGGTGGTGCCGGTAGGAAACACTGTTGTTGAGATTGGGACCATTTTG TTTGCTGAGGTTTTGGGTAGAACACTAACTGGTAGGCCATTGCTCTCTACTAGAAAGCTCTTCCGCCGGATCGCTTGGCA TCGACTGAGGCAGATAAAACAGCTCAATGAACCTATAATGATTAGAGTCACCGAGTGGAATATTAGCGGCCTGCTAACAA GGATTGAGGGTATGCGAGCTTTCCTACCCAAAGCTGAGCTTGTAAAAAGAGTAAATAGCTTTACTGAATTGAAAGAAAAT GTCGGATGTTGTATGTATGTACAAATTACTGAAGTAGATGAAGCTAAAAACAATGTGATAGTTAGTGAGAGAGAAGCCTG GGAAAAGCTTTATCTTCGAGAAGGAACACTTCTTGAAGGGACCGTGAAAAAGGTTCTTCCTTATGGAGCCCAAATAAGAA TAGGAGAAACAAATAGATGGTGA
Protein sequence (LotjaGi2g1v0115400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLILCPCKSLSFCFFKKKIPNTKLPPQKFCAFTNKFAILGTTHVAFGSRNGELFLGNELSQEAVDVRIPEQETLELLNK PSLVPIRNGSFPEIEVETEKASIEVKGDDGVLEVSEERDEMGVDENEEEEEGAKKVNNAEYYEPKPGDFVFGVVVSGNAN RLNVNVGAELPGTLLTKEVLPLNSNEMEYLICDGNKKCEKNFMAHGRMGILKNDEDDDDAINGVMVVPVGNTVVEIGTIL FAEVLGRTLTGRPLLSTRKLFRRIAWHRLRQIKQLNEPIMIRVTEWNISGLLTRIEGMRAFLPKAELVKRVNSFTELKEN VGCCMYVQITEVDEAKNNVIVSEREAWEKLYLREGTLLEGTVKKVLPYGAQIRIGETNRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 380 | 360 | 6.7E-136 | – | |
| PANTHER | 21 | 380 | 360 | 6.7E-136 | – | |
| MobiDBLite | 116 | 137 | 22 | - | – | |
| SUPERFAMILY | 266 | 344 | 79 | 9.8E-5 | ||
| CDD | 276 | 344 | 69 | 1.3893E-12 | – | |
| ProSiteProfiles | 276 | 344 | 69 | 9.019 | ||
| Pfam | 283 | 342 | 60 | 2.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0115400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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