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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR003029
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.537s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0198159.1
n.a. PREDICTED: protein RRP5 homolog [Cicer arietinum] gi|502167476|ref|XP_004514152.1| chr0 96516667 96541748 +
3 domain predictions
1 GO term
Lj0g3v0206689.1
n.a. PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi|502127604|ref|XP_004499769.1| chr0 103036905 103049147 +
2 domain predictions
1 GO term
Lj0g3v0206689.2
n.a. PREDICTED: transcription elongation factor SPT6-like [Cicer arietinum] gi|502127604|ref|XP_004499769.1| chr0 103036905 103049147 +
2 domain predictions
1 GO term
Lj0g3v0221429.1
n.a. PREDICTED: 30S ribosomal protein S1 homolog [Glycine max] gi|356538073|ref|XP_003537529.1| chr0 113636444 113643439 +
3 domain predictions
1 GO term
Lj0g3v0221429.2
n.a. PREDICTED: 30S ribosomal protein S1-like [Cicer arietinum] gi|502135249|ref|XP_004502269.1| chr0 113636444 113643439 +
3 domain predictions
1 GO term
Lj0g3v0234959.1
n.a. Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana] gi|42571149|ref|NP_973648.1| chr0 121754080 121754475 -
3 domain predictions
1 GO term
Lj0g3v0250239.1
n.a. PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Fragaria vesca subsp]. vesca] gi|470142342|ref|XP_004306870.1| chr0 129717504 129724134 -
3 domain predictions
1 GO term
Lj0g3v0334799.1
n.a. PREDICTED: 30S ribosomal protein S1 homolog A-like [Cicer arietinum] gi|502093372|ref|XP_004489921.1| chr0 175288362 175294393 +
3 domain predictions
1 GO term
Lj0g3v0334799.3
n.a. PREDICTED: 30S ribosomal protein S1 homolog A-like [Cicer arietinum] gi|502093372|ref|XP_004489921.1| chr0 175288362 175294393 +
3 domain predictions
1 GO term
Lj1g3v2110490.1
n.a. PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Glycine max] gi|356539999|ref|XP_003538479.1| chr1 25317185 25320229 -
3 domain predictions
1 GO term
Lj1g3v3979350.1
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47298821 -
3 domain predictions
1 GO term
Lj1g3v3979350.2
n.a. PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1| chr1 47291452 47317513 -
3 domain predictions
1 GO term
Lj1g3v4081780.1
n.a. PREDICTED: transcription elongation factor SPT6-like isoform X2 [Cicer arietinum] gi|502107599|ref|XP_004493315.1| chr1 48159819 48170957 -
2 domain predictions
1 GO term
Lj2g3v0039360.1
n.a. DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1| chr2 860248 872589 +
2 domain predictions
1 GO term
Lj2g3v0824620.1
n.a. PREDICTED: enolase-phosphatase E1-like isoform X1 [Cicer arietinum] gi|502163996|ref|XP_004513014.1| chr2 12880587 12886959 -
3 domain predictions
1 GO term
Lj2g3v0947360.1
n.a. PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1| chr2 15051767 15062803 -
3 domain predictions
1 GO term
Lj2g3v1984950.1
n.a. DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1| chr2 29227044 29231077 -
2 domain predictions
1 GO term
Lj4g3v2928710.2
n.a. PREDICTED: bromodomain testis-specific protein-like [Cicer arietinum] gi|502139419|ref|XP_004503759.1| chr4 38877807 38884050 -
3 domain predictions
1 GO term
Lj5g3v1314600.1
n.a. Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao] gi|508718921|gb|EOY10818.1| chr5 20432653 20435756 -
2 domain predictions
1 GO term
Lj5g3v1903700.2
n.a. PREDICTED: 30S ribosomal protein S1-like [Glycine max] gi|356576093|ref|XP_003556168.1| chr5 27050799 27069586 -
3 domain predictions
1 GO term
Lj6g3v1572430.1
n.a. PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cicer arietinum] gi|502080298|ref|XP_004486520.1| chr6 17863832 17866968 -
3 domain predictions
1 GO term
LotjaGi1g1v0415200.1
n.a. Eukaryotic translation initiation factor 2 subunit alpha; TAIR: AT2G40290.1 Eukaryotic translation initiation factor 2 subunit 1; Swiss-Prot: sp|Q9SIZ2|IF2AH_ARATH Eukaryotic translation initiation factor 2 subunit alpha homolog; TrEMBL-Plants: tr|I3SIC1|I3SIC1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0415200 LjG1.1_chr1 90802809 90807849 -
3 domain predictions
1 GO term
LotjaGi1g1v0648200.1
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7L1J6|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200 LjG1.1_chr1 120577214 120603712 -
3 domain predictions
1 GO term
LotjaGi1g1v0657000.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698183 121709835 -
2 domain predictions
1 GO term
LotjaGi1g1v0657000.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|I1N8M6|I1N8M6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0657000 LjG1.1_chr1 121698902 121708758 -
2 domain predictions
1 GO term
LotjaGi2g1v0020200.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 LjG1.1_chr2 7381590 7390280 -
2 domain predictions
1 GO term
LotjaGi2g1v0020200.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200 LjG1.1_chr2 7382196 7386040 -
2 domain predictions
1 GO term
LotjaGi2g1v0115400.1
n.a. 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|K7MHP3|K7MHP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115400 LjG1.1_chr2 42620088 42626177 -
3 domain predictions
1 GO term
LotjaGi2g1v0115400.2
n.a. 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|A0A0S3TAN2|A0A0S3TAN2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115400 LjG1.1_chr2 42620088 42626177 -
3 domain predictions
1 GO term
LotjaGi2g1v0220500.1
n.a. Elongation factor Ts; TAIR: AT4G29060.1 elongation factor Ts family protein; Swiss-Prot: sp|B7K735|EFTS_CYAP7 Elongation factor Ts; TrEMBL-Plants: tr|A0A0B2SMD5|A0A0B2SMD5_GLYSO Elongation factor Ts, mitochondrial; Found in the gene: LotjaGi2g1v0220500 LjG1.1_chr2 67576034 67582878 -
3 domain predictions
1 GO term
LotjaGi2g1v0243700.1
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
3 domain predictions
1 GO term
LotjaGi2g1v0243700.2
n.a. Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700 LjG1.1_chr2 70704502 70715248 -
3 domain predictions
1 GO term
LotjaGi2g1v0414900.1
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266058 91270148 -
2 domain predictions
1 GO term
LotjaGi2g1v0414900.2
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266779 91268964 -
2 domain predictions
1 GO term
LotjaGi2g1v0414900.3
n.a. DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900 LjG1.1_chr2 91266808 91268964 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.1
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.10
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800783 12813408 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.11
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.12
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800839 12813403 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.2
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.3
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800399 12813433 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.4
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.5
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|Q9CAM1|SPT62_ARATH Transcription elongation factor SPT6-like; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800605 12813422 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.6
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.7
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.8
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.2 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi3g1v0103300.9
n.a. Transcription elongation factor SPT6; TAIR: AT1G65440.1 global transcription factor group B1; Swiss-Prot: sp|A8MS85|SPT61_ARATH Transcription elongation factor SPT6 homolog; TrEMBL-Plants: tr|A0A1J7IEI3|A0A1J7IEI3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0103300 LjG1.1_chr3 12800768 12813413 -
2 domain predictions
1 GO term
LotjaGi4g1v0424000.1
n.a. 30S ribosomal protein S1; TAIR: AT1G12800.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1; TrEMBL-Plants: tr|A0A0B2QV70|A0A0B2QV70_GLYSO 30S ribosomal protein S1; Found in the gene: LotjaGi4g1v0424000 LjG1.1_chr4 79902112 79908374 -
3 domain predictions
1 GO term
LotjaGi5g1v0008200.1
n.a. ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7GSK6|A0A1J7GSK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200 LjG1.1_chr5 1790558 1797484 -
3 domain predictions
1 GO term
LotjaGi5g1v0008200.3
n.a. ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7GSK6|A0A1J7GSK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200 LjG1.1_chr5 1793433 1797287 -
3 domain predictions
1 GO term