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PF00575

Source: Pfam

Description

S1 RNA binding domain

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

Associated Lotus transcripts 37

Transcript Name Description Predicted domains Domain count
Lj0g3v0198159.1
– PREDICTED: protein RRP5 homolog [Cicer arietinum] gi|502167476|ref|XP_004514152.1|
Domains
22
Lj0g3v0221429.1
– PREDICTED: 30S ribosomal protein S1 homolog [Glycine max] gi|356538073|ref|XP_003537529.1|
Domains
17
Lj0g3v0221429.2
– PREDICTED: 30S ribosomal protein S1-like [Cicer arietinum] gi|502135249|ref|XP_004502269.1|
Domains
10
Lj0g3v0234959.1
– Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana] gi|42571149|ref|NP_973648.1|
Domains
15
Lj0g3v0250239.1
– PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase-like [Fragaria vesca subsp]. vesca] gi|470142342|ref|XP_004306870.1|
Domains
34
Lj0g3v0334799.1
– PREDICTED: 30S ribosomal protein S1 homolog A-like [Cicer arietinum] gi|502093372|ref|XP_004489921.1|
Domains
12
Lj0g3v0334799.3
– PREDICTED: 30S ribosomal protein S1 homolog A-like [Cicer arietinum] gi|502093372|ref|XP_004489921.1|
Domains
12
Lj1g3v2110490.1
– PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Glycine max] gi|356539999|ref|XP_003538479.1|
Domains
19
Lj1g3v3979350.1
– PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1|
Domains
23
Lj1g3v3979350.2
– PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic-like [Cicer arietinum] gi|502107284|ref|XP_004493216.1|
Domains
36
Lj2g3v0039360.1
– DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1|
Domains
12
Lj2g3v0824620.1
– PREDICTED: enolase-phosphatase E1-like isoform X1 [Cicer arietinum] gi|502163996|ref|XP_004513014.1|
Domains
27
Lj2g3v0947360.1
– PREDICTED: polyribonucleotide nucleotidyltransferase 2, mitochondrial-like [Cicer arietinum] gi|502090489|ref|XP_004489245.1|
Domains
33
Lj2g3v1984950.1
– DNA-directed RNA polymerase II subunit RPB7 [Glycine max] gi|351722267|ref|NP_001236982.1|
Domains
12
Lj4g3v2928710.2
– PREDICTED: bromodomain testis-specific protein-like [Cicer arietinum] gi|502139419|ref|XP_004503759.1|
Domains
10
Lj5g3v1903700.2
– PREDICTED: 30S ribosomal protein S1-like [Glycine max] gi|356576093|ref|XP_003556168.1|
Domains
11
Lj6g3v1572430.1
– PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cicer arietinum] gi|502080298|ref|XP_004486520.1|
Domains
18
LotjaGi1g1v0415200.1
– Eukaryotic translation initiation factor 2 subunit alpha; TAIR: AT2G40290.1 Eukaryotic translation initiation factor 2 subunit 1; Swiss-Prot: sp|Q9SIZ2|IF2AH_ARATH Eukaryotic translation initiation factor 2 subunit alpha homolog; TrEMBL-Plants: tr|I3SIC1|I3SIC1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0415200
Domains
21
LotjaGi1g1v0648200.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G03710.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic; TrEMBL-Plants: tr|G7L1J6|G7L1J6_MEDTR Polyribonucleotide nucleotidyltransferase; Found in the gene: LotjaGi1g1v0648200
Domains
36
LotjaGi2g1v0020200.1
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200
Domains
14
LotjaGi2g1v0020200.2
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I3SGA6|I3SGA6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0020200
Domains
14
LotjaGi2g1v0115400.1
– 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|K7MHP3|K7MHP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115400
Domains
9
LotjaGi2g1v0115400.2
– 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|A0A0S3TAN2|A0A0S3TAN2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0115400
Domains
12
LotjaGi2g1v0220500.1
– Elongation factor Ts; TAIR: AT4G29060.1 elongation factor Ts family protein; Swiss-Prot: sp|B7K735|EFTS_CYAP7 Elongation factor Ts; TrEMBL-Plants: tr|A0A0B2SMD5|A0A0B2SMD5_GLYSO Elongation factor Ts, mitochondrial; Found in the gene: LotjaGi2g1v0220500
Domains
28
LotjaGi2g1v0243700.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700
Domains
32
LotjaGi2g1v0243700.2
– Polyribonucleotide nucleotidyltransferase; TAIR: AT5G14580.1 polyribonucleotide nucleotidyltransferase; Swiss-Prot: sp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial; TrEMBL-Plants: tr|V7C0V9|V7C0V9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0243700
Domains
35
LotjaGi2g1v0414900.1
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|A0A0G2T569|A0A0G2T569_9ROSI DNA-directed RNA polymerase II non-catalytic subunit; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi2g1v0414900.2
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi2g1v0414900.3
– DNA-directed RNA polymerase II subunit; TAIR: AT5G59180.1 DNA-directed RNA polymerase II; Swiss-Prot: sp|P46279|RPB7_SOYBN DNA-directed RNA polymerase II subunit RPB7; TrEMBL-Plants: tr|I1K337|I1K337_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0414900
Domains
14
LotjaGi4g1v0424000.1
– 30S ribosomal protein S1; TAIR: AT1G12800.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1; TrEMBL-Plants: tr|A0A0B2QV70|A0A0B2QV70_GLYSO 30S ribosomal protein S1; Found in the gene: LotjaGi4g1v0424000
Domains
10
LotjaGi5g1v0008200.1
– ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7GSK6|A0A1J7GSK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200
Domains
34
LotjaGi5g1v0008200.3
– ATP-dependent RNA helicase family protein; TAIR: AT3G26560.1 ATP-dependent RNA helicase; Swiss-Prot: sp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5; TrEMBL-Plants: tr|A0A1J7GSK6|A0A1J7GSK6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0008200
Domains
34
LotjaGi5g1v0113300.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G11964.2 RIBOSOMAL RNA PROCESSING 5; Swiss-Prot: sp|F4J8K6|RRP5_ARATH rRNA biogenesis protein RRP5; TrEMBL-Plants: tr|I1JFV5|I1JFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113300
Domains
21
LotjaGi5g1v0286600.1
– 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|K7N3Z8|K7N3Z8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0286600
Domains
11
LotjaGi6g1v0102800.1
– Polyribonucleotide nucleotidyltransferase; TAIR: AT3G23700.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic; TrEMBL-Plants: tr|A0A0L9T4A4|A0A0L9T4A4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0102800
Domains
16
LotjaGi6g1v0262600.1
– 30S ribosomal protein S1; TAIR: AT5G30510.1 ribosomal protein S1; Swiss-Prot: sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic; TrEMBL-Plants: tr|A0A1J7I547|A0A1J7I547_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0262600
Domains
22
LotjaGi6g1v0262600.2
– 30S ribosomal protein S1; TAIR: AT5G30510.1 ribosomal protein S1; Swiss-Prot: sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic; TrEMBL-Plants: tr|A0A1J7FV06|A0A1J7FV06_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0262600
Domains
18

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd05692 CDD 1 2.70