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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0115800 |
| Transcript ID | LotjaGi2g1v0115800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT3G15110.1 transmembrane protein; Swiss-Prot: sp|Q8RN03|C5C4_AMYOR Cytochrome P450 165C4; TrEMBL-Plants: tr|I3STL4|I3STL4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0115800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:42808817..42811670) extracted from Lotus japonicus Gifu genome v1.2.
CTGGAGACTAATATGACCAATTAGTGGTAAAACAAATTGTGTTTCTGGCATAACAAAAATCTGAAATCGAGAAAGGGACA TGGGATATTTTGTATGATCAGATTTTCCTCTCCATTGCCCACCAAAGTCCAAAGTTCAGAACAAGATATTTTATAGAAGA AAATCTTCCACTCATTATAGCAACACACTTGAACCAAACCAGTGTTAGCTCATTGATTAGTTAAGGTAGGAACAGAAATC ACTACCAATCTATCTACTACTCGTTCTTTCTTCTATCAACTCCTCCAATGTTTCTCTCTCACTACCACCATCACCATCTT CTCTTCTCAAACCTCCCTGTTCCTCTAACACTGACACACCATCACTCATCCTTTTCACACCCTCCACCATCTCATCTTCT TCATTTTCTCCACAGACCCACAATTATTCCTCATACTATTTCAGCCATTCCTCCAACACTTTCATCATGGCTAACCGAAC TCACCACCGGAACAGATGACCCTTCTTCTACCATCCAAGTCACTTCCACCATTCTTGTGACCGGAGCCATCACTCTCTTC TTCTTTCGCACTCTCCAGCGCCGAGCAAAAAGAGCCAAAGAATTGGTAAACTCTGTTTTGCTTCACACTGATAGAATATG AAATATTCTTCCAGTAATTACGCCTAATTTATTGTAATTATATTTATTCCTAGGTTAACTTTACATGTATATATACTCTT GTTACTGATCAATGAAAGACACCAAATTATTCCATAATCTTACATGTAGGAAATATTCTTCTAGTAATTATGCCTAATTT ATTGTAATTATATTTATTCCTAGGTTGACTTTACTTGTATATATACTCTTGTTGATGATCAATGAAAGACATCAAATTAG GCCCTGTTTGGATAAACAGCTTAATTAAGCGCTTATGGTCATAAGCGCTTATGACATAAGCGCTTATTCATAAGCTATTT TTAAAAATTTATTGAAATAAATTAAAAATAAGCTGTGTATAAGCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTA TGAAAATAAGCTGAAAATAGCTTATGGCAGACCATAAGCTGTTTGCATAAGCTCTCCCAAACACTGGCATAAGAGCTTAT GCTGTCAGATAAGCTCAAATAAGCTCTTCCAAACTGGGCCTTATTCCATAATCTTACACACACAAATTACAACTACAACT ATTTCATTATATCGTACATGTTTGGAATAAAAAACCACCCGAAAATCATAGGCAATAGCTTATGTCCACATTGATTTTAA CTTCACCGTTATGATTTTTGAACAAGTTCCCAAACATCCACTTAACATCAAAATTTATGTTCAGCTATTCTTAGAAACAT GTGTAAACATCTCAATGAATATTATTTTAAGTTAAATTTTTCACATAATATTGTCACTTCAAATTTTTTTCGTATTGAAA TTTCAATAAGTTCTTACTATGGTTTTAAGTTGTGTGGTTGTGGGCATTTTTGGAATCCAGGAAAATGAGCTTATGTGGCT GCAATTGCAATCACGACAGGATCGTGCCGATACCTTCTAAACCTTAATGTCGCGATTACGGAACTTGATTTAAATCTCTA TGAAGTTCTTTCGTATTATCTATAAAAAAAACACACATAATACGAATGTTAACATGAGAAAACCATAATTTCAATTTTCA CATATACACACACAAATGAGTTCAAATCAGGAACTTGTAAATTAAAAATAAAAAATGCCATCTAGCTTTGTTGATTTGCA TTTTCATGTTAACTAGTTGATATGTGATGTTATGGTTAAGTTTGAGTCTATATTGTTTAATGAAATGAGTTGTTGTCTTT AGAAATTTAGGTCCTCTGGAGTGAACAAGTCATTGGCTTCAACTTCCATTAAAGCTAAGAAACGACCTTCACCTGATCAA GCATTGTTGGGAGCAATTATAGCAGGTGTTATTGCTGTTATTCTCTATAGGTTCACTACAAGCGTAGAGGCAACTCTGTA TCGCCAAACAATTTCAGATAATTTCTCGGTTTGTATCATGTCCTTTTTCTCTGTCCTTACTTATTCTTTACTAAAAACAA TTTTGTTCCTGTATTATTGAAAATGGCATGCTTTTCAGGTCCGCCAGGTCACAATCACCATAAGGTTCCTACCATAACTT ATCTCTCATATGGTTTCATTTTATTAAGCTTCTAACAAAAAAATCATCTGAAATTTTCTCACAGGACAATAATAAACGGC TTGTGCTACCTTGCTACATTTGTCTATGGCATAAATTCTGTTGGTTTATTGCTCTATTCTGGTCAGCTTGCCATGAACAC TTTTGAGGGAGGACCAAGTGGAAAGGAAACTGAAAAAAGAATCCTTGAGCAGTCAGGCTCATCAAATTCATCAACTGATA AACTAAACAGCACAAAGGAAGATGAAAATTCCAATAATTCACAACAATGAAAGTCCATTGGGAAAGTAATTCACGATTAG AAGTGATCAAGTTCATGTTGGTCTGTAAAGAGGTTCTTTGTAAATACAGCATTGTTCAAAAATAGTGGTGGACTTGACTA AATCCAGTTAAATGGTGGTATCAATGTTTCAATTATATGGTAATCTCTTGACTTAGGTATTGATCTGAATATTGCGCAAA TCTATATACCTCGTTTGTTGATAGTTTGAAAAACCGATTACTGGTTCTGTACACCTGCATGATGTCTCTGTTGACTGTTT TGGCATGCCTGAAGGAATTTCAATTTTGCAATCCAATTGATCGGTATGTTTCTCGTACTAAAAAAGCATTGAGGGTTGTC GGCACAAAAGAGGTGTTTAAAATTATGGAAATCATCACATTGAACATTAAAGAG
CDS sequence (LotjaGi2g1v0115800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCTCTCTCACTACCACCATCACCATCTTCTCTTCTCAAACCTCCCTGTTCCTCTAACACTGACACACCATCACTC ATCCTTTTCACACCCTCCACCATCTCATCTTCTTCATTTTCTCCACAGACCCACAATTATTCCTCATACTATTTCAGCCA TTCCTCCAACACTTTCATCATGGCTAACCGAACTCACCACCGGAACAGATGACCCTTCTTCTACCATCCAAGTCACTTCC ACCATTCTTGTGACCGGAGCCATCACTCTCTTCTTCTTTCGCACTCTCCAGCGCCGAGCAAAAAGAGCCAAAGAATTGAA ATTTAGGTCCTCTGGAGTGAACAAGTCATTGGCTTCAACTTCCATTAAAGCTAAGAAACGACCTTCACCTGATCAAGCAT TGTTGGGAGCAATTATAGCAGGTGTTATTGCTGTTATTCTCTATAGGTTCACTACAAGCGTAGAGGCAACTCTGTATCGC CAAACAATTTCAGATAATTTCTCGGACAATAATAAACGGCTTGTGCTACCTTGCTACATTTGTCTATGGCATAAATTCTG TTGGTTTATTGCTCTATTCTGGTCAGCTTGCCATGAACACTTTTGA
Protein sequence (LotjaGi2g1v0115800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFLSHYHHHHLLFSNLPVPLTLTHHHSSFSHPPPSHLLHFLHRPTIIPHTISAIPPTLSSWLTELTTGTDDPSSTIQVTS TILVTGAITLFFFRTLQRRAKRAKELKFRSSGVNKSLASTSIKAKKRPSPDQALLGAIIAGVIAVILYRFTTSVEATLYR QTISDNFSDNNKRLVLPCYICLWHKFCWFIALFWSACHEHF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | - | – | |
| PANTHER | 69 | 168 | 100 | 6.6E-43 | – | |
| TMHMM | 74 | 96 | 23 | - | – | |
| Phobius | 74 | 93 | 20 | - | – | |
| Phobius | 94 | 132 | 39 | - | – | |
| Pfam | 128 | 167 | 40 | 2.7E-11 | ||
| TMHMM | 133 | 152 | 20 | - | – | |
| Phobius | 133 | 151 | 19 | - | – | |
| Phobius | 152 | 173 | 22 | - | – | |
| Phobius | 174 | 197 | 24 | - | – | |
| TMHMM | 174 | 196 | 23 | - | – | |
| Phobius | 198 | 201 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0115800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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