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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0118200 |
| Transcript ID | LotjaGi2g1v0118200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Programmed cell death protein 4; TAIR: AT1G22730.1 MA3 domain-containing protein; Swiss-Prot: sp|Q98TX3|PDCD4_CHICK Programmed cell death protein 4; TrEMBL-Plants: tr|A0A151SX73|A0A151SX73_CAJCA Programmed cell death protein 4; Found in the gene: LotjaGi2g1v0118200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:43345314..43350591) extracted from Lotus japonicus Gifu genome v1.2.
TGAATTCCTACCACACATACAAACACCTAAATTTGCCACTACCTTTGAACACTGTCTATTCTCTCCTTTTTTCATTGCCA AACAAAGGAAAGAAAAAGAAAACTGTCACTGATTGCAACTTCCATGTTAGAAACTTGATTGAAATACGTTTTCACAGGGT AGAAACTCAAATCCATACCCTGCCACCGTATGATCATGCCCCTCGTATAAACTTCATCTCTTTGAAGTTATAGCTAAAGG TAATCTTTTATGATTTTCAAACAAGTGTGGTTTGGATAAAATTTATTGTTCGAAATGTTTGTGATGTCTAATTACAAATT CAATCGCAGTGAAATCTCTCGTACTTGACCAGTAATTTTTTGTTTTGTTTTGGAAAAAACCCCTTTCTCTAACAAATTAA ATGGCATATATTAGAGAAATTCTGAGATACTACTATAATAATATTCTGGCAATTTTAGAACTATCTATATGTGATATTAT AATCTATTATATATTTAATTCAAAGACATGATATGTAATGCTGTGTTACAATTTTAGTAATGTAATGCAGTAATGCAGGA CTTCTTTTGTTTTGGGCAATTTGCAGTACTTCTTTGAAAGTATAAGAATCTCCCCACACATTTGTATTGGACAGGATTTG TTTTATTATGCTATGCTTCAGGGGGGTTTACTCGCTTGTAATGAACCCAAACATAATGTATGTTTGAATTTCCAAAAATG TTAAATGTCGATCCACATTTAAGTCAATGTAGCAAAATCTTGATTCTCCATTAATGAGTTAGGATGTGTTTCTCCCCGTT TGTGTTAACGGGAAACTAAATAGACAATTCATGGGCATGGTCGGAATGCTTTTCCATCAAAATAAAGAAACAAAATGGCA GAAGAAATATACCCATCAAGGTGTAACATTCTACAGCCTTTAGCTATTCAGCATTTAAACATTAATTGGCTTATCTATAA TTTACTTACTCATATTTGTCTCAATAGGGCTGCTATAGTAATAGTTGAGCTTCGTAGTGTAAAATGAAAATGATTCTCAG ACATGTAGTTCTGGCGACATAATGCTAACAACGGTTTTTAATTGCCGCTAATGTTTGAAGCTGTTAAAAACCACTGCTAA TGTAATGTGTGAGCCGATTGGATGTCGCCATAATCTGTGTGTTTGCATATATTAAGCATATCAAAAGGGTAGAGAGAGAC GGGAAAGTTTGTTACAAGCATATGCTTCTTTGGAATACAGTGTACTAAGAGTCAAATTTGATTAGAGAAAATTTTATATA AGTTGTTGATCATGTGCACTGCACAAGTATAAAGTTCACTTTCTTTATTCCATTCCATCCTTGTGCAAGAAGCACTTCAT TCGCTGGTTCACTTTTTTCTATATTTTTTTCAGTTTCACTTCTAACCAGGTACTGCTGGGTTGCTACCAAAAGTATTAAT GACTATTACAGAAAAGAAGAATTGGGTTTTCACTAATAATATTGAGTATTTTCATTGAGTATTTTCATCAATCTATTTCA TTTGTGGACATGCAAACTAATCTTCAAGTTTGGTATGATCATTGTAGGACAGAAGGGAAATGGAACAAAATCATCTATGG AGTAATACAAAAAGAAGAGAAGACTGACCCAAGAAGCAGATTAGAGATTCAAGTCATCTTTGATGTGCCATTGACTGGAG TTACCGAATTATTCTGAGCCTGACACTCTGTTTTGAGTATTTATGATTTGTGTGAGTTAAGAGTGGAAGTTTTGAGATAA GTACAATGGATTTCGGTGAGGGTTATGTATCAAATGAGCATCGTGAGCTTCATCGATCAGTAACCGAAAGTGCAGATCCT TTATCTGTTTCTCCATTGCAACTTGCTCCTAAGTCACCAAGATGTCCTAAATCTCCTAGGTCTCCTAAATCTCCAAGGTC CCCAAAGTTGCAAGGAAAGTGCAGCAATCTAAGTCCAAAGAATAGGCAACCACATTCTTCAAAAGATGGACGTCCAAAGA AAGGTGAAGTCTTTAACCATTGAAGATTCATTACCACTTTCCACTTTTAATGCCTGATAACTTCTTCTAGTATGGGTGGG TGCATCCGGGTACATAGATAAATTAAGCACGCTTATGACAATAAACACTTATTGCATAAGCTAATTTAAGAAACCAATTT ATATAAGCTCAAATTAGGTTATAAGTAAGTATAATCACTTATTCACGAGCTAATCTAAACAGACTATGATATAAGTTCAG CAGGTCATAAGCTATTTCCATTAGTTTTCTCAAACACCAGCATAAGCGCTAATACTATAAGATAAGCTAAAATAAGCTCT TCCAAACAAGGCCTAAGTAGCTACATTAAAATTTGTGTGATGAGTGATATTCATAGACTTATGTTGCCACTTTTCCTCAT TTAGTCTTAAGAGATCATTAGTGTTGGACATCCTTATAATCTAAATACTTGAAATTGTATATTTAAAACACTCAAATATG AGGTAGATACAAAAAATTCAAGGTCCTCATGTGTGATATGTCATGACTGATATCATAGTCTTAAACTGTTCATATGACTT ACAAGTTTCAGTCATAAAAATATTTCTATGTACTTGGAATAGCATAATACCCATATAATGTTTAGCTTTGCCACAAGGTA TAGACATTGAATTGAAGGAAATGAATTCCCTGTACTCAGAAATTCTTATATTCACTCTATCTGAGTCATTCAATCAAGAT TAATCGGATTATCTGAAGTCAAATCTTGATGAAATATATGAAACTATGATATTGATCTGATAGCTCGGATTGCATCAATG CAAGTATCTCTGACTGCAACTCGAATACATGAATTGAATGGTCTAGCAACTTGATCACTGGAGATTCTTTTGTTTTGGTG TTTCTTGACTTATCAAATTATACGATAAATACTTGTGTTCCCTAAATTGCAAGAAGCAACCATTTTACCCTACTCTCATG TGCAGGTGGTTCTGGTGGTAAAGGTACCTGGGGTGGATTGCTTGACACAGATGATATGGACTGTCTTGACCCCAGTGATC CAAACTATGATAGCACTGAGGTAGAAAGTTAATATTTAATCATTCTTTTGTAATAGAGACTTACATGGATCAAATCTGTT TTTACTTATTTCGTTCTGTGTATATTTCTGTAACACCAAAAACTATGCATTTTATATATGGTTTTGTAGGAAGTTGACCA TTCAAATGAAAACAAAATAACAACTGATCTGGACAACTACAAGAAAAAAGCTACAATTATAGTGGAAGAATACTTTGCCA CTGATGATGTTGTTGCAGCAATAAATGAACTTCGAGAGCTAGGAAAACCAGAATACAGCTACTACTTTGTCAAAAAACTT GTGTCCATGTCAATGGATAGACATGACAAGGAAAAAGAAATGGCGGCGATTCTGTTATCTGCACTCTATGCTGACATAAT TCACCCTTCACAAGTTTACAAAGGCTTCAGCAAATTAGTTGAATCAGCAGATGACCTGATAGTAGATATACCAGACACAG TTGATATTCTCGCACTTTTCTTAGCTCGAGCCGTGGTTGATGACATCCTTCCTCCTGCATTTTTGAAGAAACAGACAGCA TACTTGCCCAAAGATTCTAAAGGTGCTGAGGTCTTGAAGAAAGCTGAGAAAAGCTACCTAGCAGCCCCTCTGCACGCAGA AATCATCGAGCGGCGCTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTCAAGACAAGAATAAACAATTTCTTGAAGG AGTATGTAGTGAGTGGTGACAAGAAAGAAGCCTTTAGATGTATCAAGGATTTGAAAGTTCCTTTCTTCCATCATGAAATA GTGAAACGGGCTCTTATAATGGCGATGGAAAGGCGCCAAGCAGAAACTCCGCTACTAGACCTGTTGAAGGAGGCAGCTGA AGAAGGTTTTATTAACACCAGCCAAATGTCTAAAGGGTTCAGTAGATTGATTGACACTGTTGATGACTTATCACTCGACA TACCGAATGCGCACGGAATACTGCAGGAACTAATGTCTAAAGCAGCATCTGAGGGTTGGTTGTGTGTGTCATCTTTGAAA CCACTTACAGTGGAGCCTGAAAAGAATTCAATCAAAGACAGTGCTGCTAGAAGTTTTAAGCTAAAGACTCAGTCCATCAT TCAAGAGTACTTTTTATCAGGTGACATATTGGAGGTAACTAGTTGTCTAGAACAAGAGAACAACAAAAACTGTGCTGAAC TCAATGCAATCTTTGTTAAGAAACTAATAACTTTAGCAATGGATAGAAAGAATAGGGAGAAGGAAATGGCCTCTGTGTTG CTTTCATCATTGTGTTTCCCAGCTGATGATGTTGTGAGTGGTTTTGTGATGTTGATAGAGTCAGCAGATGACACTGCTCT TGACAACCCTGTAGTTGTTGAGGATCTGGCTATGTTTCTAGCTAGAGCAGTGGTAGATGAAGTCCTGGCTCCACAACACC TTGAAGAGATTGGAACACAATTTTTAGGGCCAGACTCAGTTGGCAGCAAAGTTCTTCGAATGGCAAAGTCATTACTAAAG GCTAGACTTGCCGGCGAGCGAATTTTGAGGTGTTGGGGAGGCGGCGGAAGCAGCAGGCCAGGATGGGCAGTTGAGGATGT CAAGGACATGATCGGAAAGCTTTTGGAGGAGTATGACTCTGGAGGTGACATACGCGAGGCTTGTCGCTGCATGAAAGAGT TAGGTATGCCGTTTTTCCACCACGAGGTTGTTAAGAAAGCTCTGGTGACAATCTTTGAAAAAAAGAATGAGCGGTTATGG GGTCTGCTCAAGGAGTGTTTCGAATCAGGGTTAATAACCATGAATCAGATGGCGAAGGGTTTTGAAAGGGTTTCAGAGTC TCTTGATGACTTGGCTTTGGATGTCCCAGATGCTAAAAAACAGTTTGCACACTATGTTGAAAGAGCAAAGACTGAAGGAT GGTTGGACAGTTCATTTTGTTCCAGCAATTTGGAACATTCCACAGAGAATGGCACTTGATAGTTATAATATGGGTAATCA GTAATACTAGTTTTGCTTATCTACTTTTTCTAAATCTACACTTACATCAAATGTATACACATGCAGGTATAAATTGTTAA GCCTATGCATGCATAACTTAAAATGTAGTCTTCTATCAAATGTAGTCTCAAATAATCCCATACAATACTTTTTTATCAAG ACAAAGTTTGTAGACAAATTCTTGGAAGTTTTAATAGATCAGCAACCTCCAAACCAGACTTCAGCTGGGAACTTTGCC
CDS sequence (LotjaGi2g1v0118200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTCGGTGAGGGTTATGTATCAAATGAGCATCGTGAGCTTCATCGATCAGTAACCGAAAGTGCAGATCCTTTATC TGTTTCTCCATTGCAACTTGCTCCTAAGTCACCAAGATGTCCTAAATCTCCTAGGTCTCCTAAATCTCCAAGGTCCCCAA AGTTGCAAGGAAAGTGCAGCAATCTAAGTCCAAAGAATAGGCAACCACATTCTTCAAAAGATGGACGTCCAAAGAAAGGT GGTTCTGGTGGTAAAGGTACCTGGGGTGGATTGCTTGACACAGATGATATGGACTGTCTTGACCCCAGTGATCCAAACTA TGATAGCACTGAGGAAGTTGACCATTCAAATGAAAACAAAATAACAACTGATCTGGACAACTACAAGAAAAAAGCTACAA TTATAGTGGAAGAATACTTTGCCACTGATGATGTTGTTGCAGCAATAAATGAACTTCGAGAGCTAGGAAAACCAGAATAC AGCTACTACTTTGTCAAAAAACTTGTGTCCATGTCAATGGATAGACATGACAAGGAAAAAGAAATGGCGGCGATTCTGTT ATCTGCACTCTATGCTGACATAATTCACCCTTCACAAGTTTACAAAGGCTTCAGCAAATTAGTTGAATCAGCAGATGACC TGATAGTAGATATACCAGACACAGTTGATATTCTCGCACTTTTCTTAGCTCGAGCCGTGGTTGATGACATCCTTCCTCCT GCATTTTTGAAGAAACAGACAGCATACTTGCCCAAAGATTCTAAAGGTGCTGAGGTCTTGAAGAAAGCTGAGAAAAGCTA CCTAGCAGCCCCTCTGCACGCAGAAATCATCGAGCGGCGCTGGGGAGGTAGTAAGAATACAACAGTTGATGATGTCAAGA CAAGAATAAACAATTTCTTGAAGGAGTATGTAGTGAGTGGTGACAAGAAAGAAGCCTTTAGATGTATCAAGGATTTGAAA GTTCCTTTCTTCCATCATGAAATAGTGAAACGGGCTCTTATAATGGCGATGGAAAGGCGCCAAGCAGAAACTCCGCTACT AGACCTGTTGAAGGAGGCAGCTGAAGAAGGTTTTATTAACACCAGCCAAATGTCTAAAGGGTTCAGTAGATTGATTGACA CTGTTGATGACTTATCACTCGACATACCGAATGCGCACGGAATACTGCAGGAACTAATGTCTAAAGCAGCATCTGAGGGT TGGTTGTGTGTGTCATCTTTGAAACCACTTACAGTGGAGCCTGAAAAGAATTCAATCAAAGACAGTGCTGCTAGAAGTTT TAAGCTAAAGACTCAGTCCATCATTCAAGAGTACTTTTTATCAGGTGACATATTGGAGGTAACTAGTTGTCTAGAACAAG AGAACAACAAAAACTGTGCTGAACTCAATGCAATCTTTGTTAAGAAACTAATAACTTTAGCAATGGATAGAAAGAATAGG GAGAAGGAAATGGCCTCTGTGTTGCTTTCATCATTGTGTTTCCCAGCTGATGATGTTGTGAGTGGTTTTGTGATGTTGAT AGAGTCAGCAGATGACACTGCTCTTGACAACCCTGTAGTTGTTGAGGATCTGGCTATGTTTCTAGCTAGAGCAGTGGTAG ATGAAGTCCTGGCTCCACAACACCTTGAAGAGATTGGAACACAATTTTTAGGGCCAGACTCAGTTGGCAGCAAAGTTCTT CGAATGGCAAAGTCATTACTAAAGGCTAGACTTGCCGGCGAGCGAATTTTGAGGTGTTGGGGAGGCGGCGGAAGCAGCAG GCCAGGATGGGCAGTTGAGGATGTCAAGGACATGATCGGAAAGCTTTTGGAGGAGTATGACTCTGGAGGTGACATACGCG AGGCTTGTCGCTGCATGAAAGAGTTAGGTATGCCGTTTTTCCACCACGAGGTTGTTAAGAAAGCTCTGGTGACAATCTTT GAAAAAAAGAATGAGCGGTTATGGGGTCTGCTCAAGGAGTGTTTCGAATCAGGGTTAATAACCATGAATCAGATGGCGAA GGGTTTTGAAAGGGTTTCAGAGTCTCTTGATGACTTGGCTTTGGATGTCCCAGATGCTAAAAAACAGTTTGCACACTATG TTGAAAGAGCAAAGACTGAAGGATGGTTGGACAGTTCATTTTGTTCCAGCAATTTGGAACATTCCACAGAGAATGGCACT TGA
Protein sequence (LotjaGi2g1v0118200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFGEGYVSNEHRELHRSVTESADPLSVSPLQLAPKSPRCPKSPRSPKSPRSPKLQGKCSNLSPKNRQPHSSKDGRPKKG GSGGKGTWGGLLDTDDMDCLDPSDPNYDSTEEVDHSNENKITTDLDNYKKKATIIVEEYFATDDVVAAINELRELGKPEY SYYFVKKLVSMSMDRHDKEKEMAAILLSALYADIIHPSQVYKGFSKLVESADDLIVDIPDTVDILALFLARAVVDDILPP AFLKKQTAYLPKDSKGAEVLKKAEKSYLAAPLHAEIIERRWGGSKNTTVDDVKTRINNFLKEYVVSGDKKEAFRCIKDLK VPFFHHEIVKRALIMAMERRQAETPLLDLLKEAAEEGFINTSQMSKGFSRLIDTVDDLSLDIPNAHGILQELMSKAASEG WLCVSSLKPLTVEPEKNSIKDSAARSFKLKTQSIIQEYFLSGDILEVTSCLEQENNKNCAELNAIFVKKLITLAMDRKNR EKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQFLGPDSVGSKVL RMAKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYDSGGDIREACRCMKELGMPFFHHEVVKKALVTIF EKKNERLWGLLKECFESGLITMNQMAKGFERVSESLDDLALDVPDAKKQFAHYVERAKTEGWLDSSFCSSNLEHSTENGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 115 | 115 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 49 | 68 | 20 | - | – | |
| PANTHER | 70 | 713 | 644 | 0.0 | ||
| PANTHER | 70 | 713 | 644 | 0.0 | – | |
| Gene3D | 115 | 268 | 154 | 7.8E-42 | ||
| SUPERFAMILY | 125 | 285 | 161 | 8.25E-40 | ||
| ProSiteProfiles | 127 | 248 | 122 | 23.842 | ||
| SMART | 128 | 239 | 112 | 2.3E-39 | ||
| Pfam | 129 | 239 | 111 | 6.9E-23 | ||
| Gene3D | 278 | 411 | 134 | 1.7E-42 | ||
| SUPERFAMILY | 288 | 408 | 121 | 3.17E-34 | ||
| ProSiteProfiles | 291 | 412 | 122 | 23.614 | ||
| SMART | 292 | 403 | 112 | 9.1E-37 | ||
| Pfam | 293 | 402 | 110 | 9.2E-27 | ||
| Gene3D | 412 | 570 | 159 | 3.3E-37 | ||
| SUPERFAMILY | 424 | 584 | 161 | 5.75E-36 | ||
| ProSiteProfiles | 426 | 547 | 122 | 20.639 | ||
| SMART | 427 | 538 | 112 | 2.9E-32 | ||
| Pfam | 428 | 537 | 110 | 1.7E-15 | ||
| Gene3D | 578 | 711 | 134 | 3.5E-47 | ||
| SUPERFAMILY | 591 | 710 | 120 | 7.19E-36 | ||
| ProSiteProfiles | 594 | 713 | 120 | 23.988 | ||
| SMART | 595 | 704 | 110 | 2.4E-27 | ||
| Pfam | 596 | 704 | 109 | 1.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0118200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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