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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0120700 |
| Transcript ID | LotjaGi2g1v0120700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CASP-like protein; TAIR: AT2G28370.1 Uncharacterized protein family (UPF0497); Swiss-Prot: sp|P0DI70|CSPL2_GINBI CASP-like protein 5A1; TrEMBL-Plants: tr|I3SAB9|I3SAB9_LOTJA CASP-like protein; Found in the gene: LotjaGi2g1v0120700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:44354361..44357210) extracted from Lotus japonicus Gifu genome v1.2.
AACCAAACAAAGCCTATGTAGAAGGGGGGTACTGTGCCACGGGATCCGAAGACGAAGACTCTTTTCACAGTGTTGTTGTT GGAGTAAAGAGAGAGAGAGCATCGTGTGAGGTTGGTTGAGAAGAGAGTGATTGATTGCTCTTTGCTCCTTCCTTCCATGT CCATGGTTCGCCCTTCAGTTCACCCAGTGGAAGCTCCACCTCTCACCGACCATGCAACTCCCATTCACACCATGAAGGAC ATCCAAGGCATGCCCGGAACCCTCGGCGGTTTGCTCCTCCGCTTCCTTCAATTCTCCTTCGCCCTTGTTTCCCTCTCTGT CATGGCCACCACCTCTGATTTCCCTTCAGTCACCGCCTTCCGGTAATTCCTCTATCTCAATGCCCCATAATTTGCTCTTT TTTTCTTCCTTGATTTGCTTTCGACTTGGTTCAAATTTGCAACTTTTGAAATGGGTTTTCATGTTTTGCGCGGTTTGTGA TGTGCTGAGTCCAATTCATGCTGTTTTAGTCTTGATTAATTGATATCTCATGGGAAGGAGAAGTGAAGAGAATTTTTGTT TAGGAATCTGGATTTAAATGACTGCTTCCATTTCTTTTCTGATGAAATAAATGTATACATGGACATTTTCATCTCATGAA TGTCATGTATTGTTCTTGGTTTTGCGGTCATGCCTAGTTGGTACAGCGCCGGGCTTGTTTTACGGGTTGAATAATAAGTA GACTGTGATGGAACAAATAAGGCAGAAACCTGGAGTAGCACCTATTGAGAGGAAGATCACATAAACTCACCTAAGGTGGT TTGGTCAGCAGGAGAAGACCACCAAGGCTCCAATGAGAGAAAAAGGGTGCTATAAAGTTCCTGCCGTGATGGGTTCATGG TAATGCTGCCTACAACACTCAACAATGGATCCAACATTTTCTTGGATCCCACCATGGCAAGAGCTTTATAACAGTGCTGT CCTTTTTTTCTTCCTGGAGCCTTGGTTGATCATCTCCTTGCATGACCGAATGGAAGTGATAATCCAATTAAAAGAGGTCA GAAAACTGATGAAAAGTTTATTAGAAACCATTAAACGAACTTAATCTGAATGAACATTATGAAATTTTGTTTTTTGGTGG AGCTTAATGGCATATTTGGTACCTTGCAGCTGACCATCACTGGTTGTATAAATTGTTTTACATGGAAAGCCTATTGGTTG GAAACTCTGCATTTTTTTAAAAGGTTTAGGTAAAATCGTCGAATAAATATAAAGGTAAGGATTTTGTTTTTTCTTTAGTA TTCACATGGGCTAAAATCTTACAAAATTTATACCATCTGAATATCCAATTGGTGAGCTGTTCAAGGCTTTGCCTCTACAG TCTATTGGGAGGTAACAATTTTAACTATGAAGCACAAATCTGTGTCTTAAATCTAAGGCGATGAGTGATTAGTAAAAGAC CGGGAAAGCATTAGCAAGACACCATCCTCTGAATTGAAGTCAGGTTCCAAATTGAAGAGCAACTCCACTTAAACATTTGT TTATAGACTGATTGTTTGAATATGTGAATGCGATCATTAGGATTTGATGATGGTGCCATTGTTATAGTCTTCTTTAAATA CTTGTTTATATCTCTTTTGTAATGTTTGCAAAGGTGATCACTAGGAGTTCTGATGATGGTGCCATTTGCATACACTTCAT TTTCAACAATGCATAACAATCTTTGTTATATTTGCTGTACCAGCTACCTGGTTGCTGCTGTCAGCCTGCAAAGCTTGTGG AGCCTCTCTTTGGCAATTGCTGATATATATGCCATTTTAGTGAGACGGGGCTTCCGGAATCCGAGAATTGTCAGCTTATT CTCTGTTGGTGATGGGGTAGGAAAATGCTGGTGAACTTTGTTTGACTAGCGTAATCAATCTTGAACTTTGAATTTATTAG TTATCCAAGATAGAAGAAACCATTGTAGTAGTACTTTGTTGTGAAAAAAACTTGTGTGGAATAATAATTTGACGAAATAT AAATGAAAACTTGAACCTGACCATCAGATTAATATGATTTGAGAAATGCTTAAACATTGTACTACATAGGCAAGCTATAA GTTAGCTATGGAGCTGATTGTTCAATTATTGATGTGGAAGTCAATATTTTCAACAAGCTTATTATTGGGATTATCATTTT TCCTTTCTAAACAATTTTGTATAATGTACTGACATGTGCTAAAATAACACAGGCACACTATATGTTATTTTCTTGAAACA CAGTTTTCTCTGAAACTGAGTTTTTTTCTTCCTTGAATTCTATTGCAGATCACTTCAACACTTACATTTTCTGCAGCCTG TGCTTCTGCTGGTATCACAGTCCTTATTGGCAATGATCTGAATGAGTGTGCACAAAACCATTGCAGCAGGTTTGAGACAG CGACAGCCATGGCATTTATGAGTTGGTTTGCTGCTTCGCCCTCGTTTATTTTGAATTTCTGGACTTTGGCCTCCAAGTAA AAGCAGCAAGGAAGGGTCATATAGCTGAAGGTGTGGCATAAACTGAGAACAGATGACCCAGATTTTTCCAAAATGCAAAT AATATTCATGTGCTTTTCTTTCTGGTCCTTTGTAATATTGTCAATCTTCAATTTATGGCACGAGCTTGACAACTTTAGTT GAGTTATTTGTACCCTTCCATGTAAATTATGTCTACATGGCTCAATATGTATGAAGTTAGGAAGAGTGGACAATTGTTAC ACAGCTGTAATTCTAGTATAGTTAGTTCAATTACATGTAGATCCCTTTGTCTTTACTCTTTAATACGGGTGGTATTGTGG GTCTGACCCGCCAACCTACTTTTTTTCACTTCTAATCATTTGGTGTAGAC
CDS sequence (LotjaGi2g1v0120700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATGGTTCGCCCTTCAGTTCACCCAGTGGAAGCTCCACCTCTCACCGACCATGCAACTCCCATTCACACCATGAA GGACATCCAAGGCATGCCCGGAACCCTCGGCGGTTTGCTCCTCCGCTTCCTTCAATTCTCCTTCGCCCTTGTTTCCCTCT CTGTCATGGCCACCACCTCTGATTTCCCTTCAGTCACCGCCTTCCGCTACCTGGTTGCTGCTGTCAGCCTGCAAAGCTTG TGGAGCCTCTCTTTGGCAATTGCTGATATATATGCCATTTTAGTGAGACGGGGCTTCCGGAATCCGAGAATTGTCAGCTT ATTCTCTGTTGGTGATGGGATCACTTCAACACTTACATTTTCTGCAGCCTGTGCTTCTGCTGGTATCACAGTCCTTATTG GCAATGATCTGAATGAGTGTGCACAAAACCATTGCAGCAGGTTTGAGACAGCGACAGCCATGGCATTTATGAGTTGGTTT GCTGCTTCGCCCTCGTTTATTTTGAATTTCTGGACTTTGGCCTCCAAGTAA
Protein sequence (LotjaGi2g1v0120700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMVRPSVHPVEAPPLTDHATPIHTMKDIQGMPGTLGGLLLRFLQFSFALVSLSVMATTSDFPSVTAFRYLVAAVSLQSL WSLSLAIADIYAILVRRGFRNPRIVSLFSVGDGITSTLTFSAACASAGITVLIGNDLNECAQNHCSRFETATAMAFMSWF AASPSFILNFWTLASK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 38 | 38 | - | – | |
| PANTHER | 1 | 175 | 175 | 2.5E-88 | – | |
| PANTHER | 1 | 175 | 175 | 2.5E-88 | – | |
| Pfam | 33 | 161 | 129 | 3.0E-26 | ||
| TMHMM | 36 | 58 | 23 | - | – | |
| Phobius | 39 | 58 | 20 | - | – | |
| Phobius | 59 | 69 | 11 | - | – | |
| Phobius | 70 | 95 | 26 | - | – | |
| TMHMM | 73 | 95 | 23 | - | – | |
| Phobius | 96 | 106 | 11 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 107 | 133 | 27 | - | – | |
| Phobius | 134 | 152 | 19 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 153 | 174 | 22 | - | – | |
| Phobius | 175 | 176 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0120700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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