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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0122500 |
| Transcript ID | LotjaGi2g1v0122500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT5G52510.1 SCARECROW-like 8; Swiss-Prot: sp|Q9FYR7|SCL8_ARATH Scarecrow-like protein 8; TrEMBL-Plants: tr|I1MPJ5|I1MPJ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0122500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45088115..45091274) extracted from Lotus japonicus Gifu genome v1.2.
TACTGTTATTTCGAATAAATACATTCTGTTAACATTGAACAAATAAAAAGAAAATGCCCTTAACTAGTGCGCTAAACGTC CCTGTTAACCTCCTAATATTAATAATAAATTAAAAAATAATTAAAATTAAAATAAAGATATAACCCTTTCCTCCTCCGTT ATATTCAGCAGAATGATTCCAACCCATTACAAACACACATCTTTTTACTTCTCTCTCTATATTATTCTGGTCTCATGCTT TTCTCCGAAAACACCACCTTTTAACTGTTCTCTCCTTATTTTCTTCGCCTGATCAGAGAGAGAGAAGAAAAAAAAACATG TCGTCGGGTTTCACCGGCGGCGGTGGTGGTGCGCCGGAGTTCTTCACCGGCAGATCCACCATCAACAACCTCACCACCAC CGTTCCCATCACCAACAACCTCCACCACCACTCTCTCTACCGAACCCAGCAACAACAACAACAACATCATCAATCCTCTC CCATATTTCTAGATCCTTCATCCCAATTCATTCAACGCCAAACACCAACAACAACAACAACAACCTTCACCGGTAAACGC ACCTTGGCTGAATTCCAAACACAACACCACCAGAACCAAATCTTCAACAACAACAACAGCAATAGCAATAGCAATAGCAA TTTCACCCATAACCAATTTCTCTCTAACCTTCTCCTTCGTTCTGTGAAGCCAAGAACAACCATGTTTCCTCACATGGATT TTTCCGTTCCTTCTCAATTGCAAAACCCAAACAATTTGGCCTTCCAAACGCAGCGTTTAGGTGTGCCTTTGCTTCATCAA CTTCGCCCTCAACCCATTAACCTCCCGGACCAGAATTTCCCATACCGGAACTCCAATTTGGGTCTGAACCGGGTTCAGAA TCAGAGTCAGACCGATGATGAACCGGAGAAGAAGATCATGAACCACCAGCTTCTGGAGTTGGAGAAGCAGCTTCTAGAAG ACAACGACGAAGGAGAAGAACCTGATGCTGCTTCTGTCATCACAACCAGTGAGTGGTCAGAGACTTATCAGAATCTCATC GGTCTAGTTTCGGGTTCAGGTTCCGGGTCGGGTTTGACTCAGAAACCCGCTTCGTCATCTCCTACTTCCTCAACGACGTC GTCTACCTCTTCCTCTGCGGCTTCACCTGCCTCGGTGTGTTCCAAACAGACGCTGATGGAAGCCGCATCTGCAATCGCTG AAGGGAAAAACGACGCCGCGTCGGAGATCCTAACCCGTTTGGTTAACCCGACTGGGAATTCGGATCAGCGGTTAACCGAT TGCATGGTTTTGGCTCTGAAATCGCGGATGAGCGCGGCGGAGAATCCTCCCCCGGTGGCGGAGCTTTTCAGCAGGGAACA CGCCGAGTCGACTCAGCTTCTGCTTGAGAACTCGCCTTGCTTCAAGGTTGGGTTAATGGCTGCGAATCTCGTGATTCTTG AAGCGGCATTTGAGGAGAACGTGAATGGGAAAGGGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGGAAGCAGTACTTT ACGCTTCTTCACGCGCTGTCAACGCGCGGGCAGAATGGGAAGGTTCCGCCGCCGATGAAGATTGCAGCGGTGGCGGAGAG CGGCGGCGAGGAAAGGGTGAGGGCGGTTGGGGAGATGCTGAGCCGGCAAGCGGAGCGGTTGAGGATCGGGTTCGAGTTTC GTGTGGTGTCTGTGCCGAATAAACTCGCTGATTTGACTCGGGAGTCACTCGGTTGCGACTCGGAGGAGACGCTGGTGGTG AACCTCGCGTTCAAGCTGAACCGCATCCCTGATGAGAGCGTTTCAACGGAGAATCCACGTGACGAGCTTTTAAGGCGCGT GAAGAAGCTCGCCCCGCGCGTGGTGACTGTTTTGGAGCAGGAGGTAAACGCCAATACGGCGCCGTTTTTGGCGCGCGTGG CTGAGTCATGGTCCTACTATAGTGCCCTGTTCGACTCGGTCGAGTCAGCAATGGGGAAGGAAAACCCGGACCGAGTCAAG GTGGAGGAGGGACTGAGCCGGAAGCTATGCAACTCGGTGGCTTGCGAGGGGAGGGACCGCGTGGAGCGGTGCGAGGTGTT CGGGAAATGGCGCGCGCGAATGAGCATGGCGGGGTTCCAGCTGAAACCGCTGAGTCAAAACCTGGCTGAGTCGATTAATT CGCGACTCGCCGCCGGGAACAACCGAGTCAACCCGGGACTCACCGTGAAAGAAGAGAACGGCGGGATATGCTTTGGTTGG ATGGGAAGGACACTCACCGTCGCATCTGCTTGGCGTTAATTTCTTTTTTATTTTTTTAATTTGGTTCGGAGTATCATTAT TATTATATATCACATTGTTACTATATTTTAACGTTATCTAGAGATAATGGAAACGCAAAGAGAATAGATTTGGATAATTA TATATGATCATGAGAAAAGGGTGAAGAAGAAGAAGAATCAAATCCCAAAGAAAAAGAAAACCCATCTCTCTTCCTCTATC TCATGGTTCTTCTTTCTTCTTCTTCTTCTACCAAACAAAAATAAATAAATAAGTGTTTGGATTCCGAGAAAATTAATGGT TGTGGTGTTTACATTTAATGTTTCATTCATGTACTAGTTGGTATACTTTTTTATAGATTTAACACACCTTCACTTGGATG TGTGAAAGGAGTTGGTTGCTGTTTGGTAGATAGATGACTTGTATGTATCGTTTTGCCCTCACAATACCGACAAATGAGGG CTCCACTTTCAAGTGTGCGTTTTATGGGATTTTAGTTGGAGTTTGAACTTCCTCTTCTCGAGTTCATGTTCCCAAATTTG TATGGGCTTCTAAAATGATAATCTTGTTTGCACGTAATCCTTTTACAGCTAATTTTGAGTGATGCAAATTGTTAAAATAT TTGTTTTAATTCATGCAAGAGTTCTTATAAATCCCAAAATGGAAGTAACAGAAAAAGAACTTATAACGCCTAACATATGG TACTATATAATAAAGATTATGCTTCTACCTAAAAAAGAATAAAGACTATGATAGATGCCAAATGATCAATTAGTTTACAT ATTGATTTTTTAATCATTTGTTCCCATATACTCGAGGAGAATTTTGTTTCAGCTGGAACCCCCGCCATGCTGAATAATAT TTGTTTGGAATCCCATTAGTAGGAATGTTATTTTTGGGTA
CDS sequence (LotjaGi2g1v0122500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGGGTTTCACCGGCGGCGGTGGTGGTGCGCCGGAGTTCTTCACCGGCAGATCCACCATCAACAACCTCACCAC CACCGTTCCCATCACCAACAACCTCCACCACCACTCTCTCTACCGAACCCAGCAACAACAACAACAACATCATCAATCCT CTCCCATATTTCTAGATCCTTCATCCCAATTCATTCAACGCCAAACACCAACAACAACAACAACAACCTTCACCGGTAAA CGCACCTTGGCTGAATTCCAAACACAACACCACCAGAACCAAATCTTCAACAACAACAACAGCAATAGCAATAGCAATAG CAATTTCACCCATAACCAATTTCTCTCTAACCTTCTCCTTCGTTCTGTGAAGCCAAGAACAACCATGTTTCCTCACATGG ATTTTTCCGTTCCTTCTCAATTGCAAAACCCAAACAATTTGGCCTTCCAAACGCAGCGTTTAGGTGTGCCTTTGCTTCAT CAACTTCGCCCTCAACCCATTAACCTCCCGGACCAGAATTTCCCATACCGGAACTCCAATTTGGGTCTGAACCGGGTTCA GAATCAGAGTCAGACCGATGATGAACCGGAGAAGAAGATCATGAACCACCAGCTTCTGGAGTTGGAGAAGCAGCTTCTAG AAGACAACGACGAAGGAGAAGAACCTGATGCTGCTTCTGTCATCACAACCAGTGAGTGGTCAGAGACTTATCAGAATCTC ATCGGTCTAGTTTCGGGTTCAGGTTCCGGGTCGGGTTTGACTCAGAAACCCGCTTCGTCATCTCCTACTTCCTCAACGAC GTCGTCTACCTCTTCCTCTGCGGCTTCACCTGCCTCGGTGTGTTCCAAACAGACGCTGATGGAAGCCGCATCTGCAATCG CTGAAGGGAAAAACGACGCCGCGTCGGAGATCCTAACCCGTTTGGTTAACCCGACTGGGAATTCGGATCAGCGGTTAACC GATTGCATGGTTTTGGCTCTGAAATCGCGGATGAGCGCGGCGGAGAATCCTCCCCCGGTGGCGGAGCTTTTCAGCAGGGA ACACGCCGAGTCGACTCAGCTTCTGCTTGAGAACTCGCCTTGCTTCAAGGTTGGGTTAATGGCTGCGAATCTCGTGATTC TTGAAGCGGCATTTGAGGAGAACGTGAATGGGAAAGGGTTCTGCGTGGTGGATTTTGAGATTGGACAGGGGAAGCAGTAC TTTACGCTTCTTCACGCGCTGTCAACGCGCGGGCAGAATGGGAAGGTTCCGCCGCCGATGAAGATTGCAGCGGTGGCGGA GAGCGGCGGCGAGGAAAGGGTGAGGGCGGTTGGGGAGATGCTGAGCCGGCAAGCGGAGCGGTTGAGGATCGGGTTCGAGT TTCGTGTGGTGTCTGTGCCGAATAAACTCGCTGATTTGACTCGGGAGTCACTCGGTTGCGACTCGGAGGAGACGCTGGTG GTGAACCTCGCGTTCAAGCTGAACCGCATCCCTGATGAGAGCGTTTCAACGGAGAATCCACGTGACGAGCTTTTAAGGCG CGTGAAGAAGCTCGCCCCGCGCGTGGTGACTGTTTTGGAGCAGGAGGTAAACGCCAATACGGCGCCGTTTTTGGCGCGCG TGGCTGAGTCATGGTCCTACTATAGTGCCCTGTTCGACTCGGTCGAGTCAGCAATGGGGAAGGAAAACCCGGACCGAGTC AAGGTGGAGGAGGGACTGAGCCGGAAGCTATGCAACTCGGTGGCTTGCGAGGGGAGGGACCGCGTGGAGCGGTGCGAGGT GTTCGGGAAATGGCGCGCGCGAATGAGCATGGCGGGGTTCCAGCTGAAACCGCTGAGTCAAAACCTGGCTGAGTCGATTA ATTCGCGACTCGCCGCCGGGAACAACCGAGTCAACCCGGGACTCACCGTGAAAGAAGAGAACGGCGGGATATGCTTTGGT TGGATGGGAAGGACACTCACCGTCGCATCTGCTTGGCGTTAA
Protein sequence (LotjaGi2g1v0122500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGFTGGGGGAPEFFTGRSTINNLTTTVPITNNLHHHSLYRTQQQQQQHHQSSPIFLDPSSQFIQRQTPTTTTTTFTGK RTLAEFQTQHHQNQIFNNNNSNSNSNSNFTHNQFLSNLLLRSVKPRTTMFPHMDFSVPSQLQNPNNLAFQTQRLGVPLLH QLRPQPINLPDQNFPYRNSNLGLNRVQNQSQTDDEPEKKIMNHQLLELEKQLLEDNDEGEEPDAASVITTSEWSETYQNL IGLVSGSGSGSGLTQKPASSSPTSSTTSSTSSSAASPASVCSKQTLMEAASAIAEGKNDAASEILTRLVNPTGNSDQRLT DCMVLALKSRMSAAENPPPVAELFSREHAESTQLLLENSPCFKVGLMAANLVILEAAFEENVNGKGFCVVDFEIGQGKQY FTLLHALSTRGQNGKVPPPMKIAAVAESGGEERVRAVGEMLSRQAERLRIGFEFRVVSVPNKLADLTRESLGCDSEETLV VNLAFKLNRIPDESVSTENPRDELLRRVKKLAPRVVTVLEQEVNANTAPFLARVAESWSYYSALFDSVESAMGKENPDRV KVEEGLSRKLCNSVACEGRDRVERCEVFGKWRARMSMAGFQLKPLSQNLAESINSRLAAGNNRVNPGLTVKEENGGICFG WMGRTLTVASAWR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 41 | 75 | 35 | - | – | |
| PANTHER | 66 | 653 | 588 | 5.8E-214 | – | |
| PANTHER | 66 | 653 | 588 | 5.8E-214 | ||
| Coils | 198 | 218 | 21 | - | – | |
| MobiDBLite | 248 | 279 | 32 | - | – | |
| ProSiteProfiles | 273 | 653 | 381 | 56.798 | ||
| Pfam | 283 | 653 | 371 | 1.1E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0122500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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