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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0124000 |
| Transcript ID | LotjaGi2g1v0124000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-carotene hydroxylase; TAIR: AT4G25700.1 beta-hydroxylase 1; Swiss-Prot: sp|Q9SZZ8|BCH1_ARATH Beta-carotene 3-hydroxylase 1, chloroplastic; TrEMBL-Plants: tr|A0A151T4H1|A0A151T4H1_CAJCA Beta-carotene hydroxylase; Found in the gene: LotjaGi2g1v0124000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:45561131..45564470) extracted from Lotus japonicus Gifu genome v1.2.
GCCCATCAATTATACATTTAAAACAATTTTGTATACCAACTAATTCCTTGATTGGCCCCACACAAGCACTTTCATTACAA AGTTCCATTCACAGCAAAGAAAGCTGTGGTCTCTGTTTTCCCCCCTTTTTAAACCTTCACTCCACACCTTCATTCAGAGA TAAACACAAACACCTTCTGTGCAATCTTCAGCTTCTTCCAAACCAAGCTCCGGCTATGGCGGCAGGACTCTCCGCCACCA TAACCGTGAAGCCCCTCTTCCGCCGCCACCATCAACCACCGTCGTTCCCCCTCCTCCTCAACCCACCTCCAGCACTCTCC TTCTCCTCCTCCCCCTTGCGATGTTTCCATCACAGCTCAACCCCTCGCACCCGAAGAATGACTACGAGCTTCACCGTCTG TGTCCTCATGGAGGATCCAAAACGCAGCACCCCCATGGAAACCGATGCGGTAGAACAAGGACAAGAACAAAGACCTTCTC CTACTCAAGTCGTGTCTGCGAAATTGGCGGAGAAATTGGCTAGGAAGAAATCAGAGAGGTTCACGTATCTCGTTGCAGCT GTGATGTCTAGCTTTGGAATCACATCCATGGCGGTTTTGGCTGTTTATTATAGATTCTCATGGCAAATGGAGGTTAGTGG TGTCTTTGGTTTTTTTTTTTCATTGGGATGGGTTGATAATTTTGAAATAAAAAATTGGGTTTATTTGGTGCAGGGTGGAG AAGTTTCTTGGTCTGAAATGTTTGGTACATTTGCTCTATCAGTGGGTGCTGCTGTAAGTCCTATTAATTTATTTAGTATT TTATCATTTCTGATCCCAATTCAGTTTTGGAACTTTTTGTATGTTTCCTTTTGTTGGAGATCTCCCAAAAATTAAAACTT TTGGTAAAACCATAAGTTTAGGGGATTTCCAAGACAAAACCAAAAATGAACTTCAGGATGGGTGCCTTATTTGCTATAAA ATTCATCTGGGGTTCATTTAATTTTGGGTGATAAAATTCATCTGATTTTTTTCAGGTGGGTATGGAGTTTTGGGCTAGAT GGGCTCACAAGGCTCTTTGGCATGCTTCCTTGTGGCACATGCATGAGGTATAATTATATGCTTCCAACTCTTTCCCCCTT GTTTTTTTATCTCCCCTTCATCTTTTCAGTCAATTTGTAGCAAATTCAAGAAGCACATAAGCATAAAAATTCAAACCTTG TTGGTTTTCAATGGTGATTTTTCTTTTCCCCTCTAAACACCACATAGTCCAAGACCAAAAAAAGGAAAATTCTTCAATTT TGATTTGACCTTGCAATTTCTCAGCAACCAATCACAATAAACTATTAGTATTTGATAGCAACTCAAAACATGAATTTTAC TTAATTTTGCTTCAATTTTACAGTCCCACCATAAACCAAGAGAAGGACCCTTCGAGATGAACGATGTTTTTGCAATAATC AACGCTGTCCCTGCCATCGCTCTCCTATCCTATGGTTTCTTTCACAAAGGACTAGTCCCTGGCCTCTGCTTCGGTGCGGT ACGTGTATCTTTCAAAACCTTTTGTTTTGTTCTCTCTCTCACTCTTTCTTGGGAGCTATATCACTGTAGAGTGTAACCAA TGAAAAATAACTACTTCATGGTAAAGCAACTGAACATTAACTTTTACTGTGACACCTTCTATGAGAGCAGGGTCTTGGAA TTACTGTCTTTGGGATGGCCTACATGTTTGTTCATGATGGTTTGGTTCATAGGAGATTCCCAGTGGGCCCCATTGCCGAT GTGCCCTACTTCAGAAGGGTAGCTGCTGCTCACAAAGTAATTATCACTATGGTTTTAACATTTTTATTATGATATAATTT TCATTTTCATTAGCATGTCAAAAAGATATATATATATATATATATATATATTTTTTTTTTTTTGTCTAAGTTTGGGGCTA TCTGATACCCATGATTTTCTTGTCGTTATTTCAGCTTCACCATTCAGACAAGTTCAGTGGGGTGCCATATGGGCTGTTTT TGGGACCAAAGGTAAGAGCCAAATTCTTCAGTTAAATATATGTATATTTATTTGTTAAAATTTATAGTATGTTTGGATTA ATTTGCTTCACCTATAATGAATTTTGACTTCAGAAAACTACTTTCAAAGTTTTTTTTACATGTTAAAATGAATTATGAAA GAATAGAGTGCATGTTTGAAAACCCTTTTATCAATTTTGAAGCTGGAGTCAATTTTTTGGGTAGAAGCTATTGTGATTAG CTTTTGTTCTTACTGTTGATTCTGATAAAGAGAAGCATATTTAAACACGTTATGGACAGTTTATGCGAGGAGCTTTTAGG TACTGGAGTTAATTCTGAGAAAAAAGAAGTTGATGTACACAATTAAGCTATTAGAGTGTGTTCCGTTCCTCGTTGAGAAT CCACACTCAATTCATGTAGAGTAAAATCAATTATGAATGAAAATATCAACGTTTCAGAGTTATTTTAGAAAATTGATTTC AAAGGTAAAGTTAATTCTGGTAGAAATTAGAGAGAATAGTTTTACATTGAACATAATCAATTGTGAGATTTTACAACTAA TTTTCACAATATCATCAACAAAAATCACATTTTCATAAATGTATCATACATAAATTACTTCACATTCAATTCACACTTTA GTCAATAGTGATGCTGATCCAACCATGCACTGAATTGATGAGCTCATGTCTTCCATATTATTTTTATGTGTTAGTTGGAC GCTTTAGTTTTATTGTGGTGCTATAATAATTGTTGGGTGATCAATATGGCGCGCAGGAACTTGAAGAGGTGGGAGGTCTA GAAGAGCTGGAGAAAGAGATAAATAGGAGGATAAGATCATACAATAATAGTTCATGACAAAAGCAAATACTAATCTAGAG TTGTCTCACAAGCAGAGTTATCAGTGTAAAGAAATATTGAATGATATGAAAAGTTTTGCTTGCATTTATACAGTAACTAG TTATAGCAGGGCGCATGAGAAAATAGATGTAAAATAACAGTAATAAACAGAAGGTTGTGCAAGATATAATTGGTGCCTTC TGTTTTTGGCTTTAGCTATGAGAAATGGGAGAAAGTACCCATGTTGCATTCCCTCATGCCCCTAGTGGGAAGGGGTCAGT CAGCTAACTTCCATTTGCTCACAGTTGGTTGGTCCCTCCTGTGGGGCATTTAGCTATGTATGCCACTCAAGGAGGGAAGG GCCTTGGTGACACCACCAATACAAACCCCTAAAATGCAGGGTAGGGTTTTCTTGGACTGAAAGTACACAATCTCAGTGTG AATAATAATATCATAAGGCTGAAATTATTTGTCTTCTTATATCTTAATCTGACTTTCTAT
CDS sequence (LotjaGi2g1v0124000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCAGGACTCTCCGCCACCATAACCGTGAAGCCCCTCTTCCGCCGCCACCATCAACCACCGTCGTTCCCCCTCCT CCTCAACCCACCTCCAGCACTCTCCTTCTCCTCCTCCCCCTTGCGATGTTTCCATCACAGCTCAACCCCTCGCACCCGAA GAATGACTACGAGCTTCACCGTCTGTGTCCTCATGGAGGATCCAAAACGCAGCACCCCCATGGAAACCGATGCGGTAGAA CAAGGACAAGAACAAAGACCTTCTCCTACTCAAGTCGTGTCTGCGAAATTGGCGGAGAAATTGGCTAGGAAGAAATCAGA GAGGTTCACGTATCTCGTTGCAGCTGTGATGTCTAGCTTTGGAATCACATCCATGGCGGTTTTGGCTGTTTATTATAGAT TCTCATGGCAAATGGAGGGTGGAGAAGTTTCTTGGTCTGAAATGTTTGGTACATTTGCTCTATCAGTGGGTGCTGCTGTG GGTATGGAGTTTTGGGCTAGATGGGCTCACAAGGCTCTTTGGCATGCTTCCTTGTGGCACATGCATGAGTCCCACCATAA ACCAAGAGAAGGACCCTTCGAGATGAACGATGTTTTTGCAATAATCAACGCTGTCCCTGCCATCGCTCTCCTATCCTATG GTTTCTTTCACAAAGGACTAGTCCCTGGCCTCTGCTTCGGTGCGGGTCTTGGAATTACTGTCTTTGGGATGGCCTACATG TTTGTTCATGATGGTTTGGTTCATAGGAGATTCCCAGTGGGCCCCATTGCCGATGTGCCCTACTTCAGAAGGGTAGCTGC TGCTCACAAACTTCACCATTCAGACAAGTTCAGTGGGGTGCCATATGGGCTGTTTTTGGGACCAAAGGAACTTGAAGAGG TGGGAGGTCTAGAAGAGCTGGAGAAAGAGATAAATAGGAGGATAAGATCATACAATAATAGTTCATGA
Protein sequence (LotjaGi2g1v0124000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAGLSATITVKPLFRRHHQPPSFPLLLNPPPALSFSSSPLRCFHHSSTPRTRRMTTSFTVCVLMEDPKRSTPMETDAVE QGQEQRPSPTQVVSAKLAEKLARKKSERFTYLVAAVMSSFGITSMAVLAVYYRFSWQMEGGEVSWSEMFGTFALSVGAAV GMEFWARWAHKALWHASLWHMHESHHKPREGPFEMNDVFAIINAVPAIALLSYGFFHKGLVPGLCFGAGLGITVFGMAYM FVHDGLVHRRFPVGPIADVPYFRRVAAAHKLHHSDKFSGVPYGLFLGPKELEEVGGLEELEKEINRRIRSYNNSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 312 | 312 | 2.0E-177 | – | |
| Phobius | 1 | 108 | 108 | - | – | |
| PANTHER | 1 | 312 | 312 | 2.0E-177 | – | |
| MobiDBLite | 71 | 92 | 22 | - | – | |
| MobiDBLite | 76 | 92 | 17 | - | – | |
| Phobius | 109 | 132 | 24 | - | – | |
| TMHMM | 110 | 132 | 23 | - | – | |
| Phobius | 133 | 143 | 11 | - | – | |
| Phobius | 144 | 166 | 23 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Pfam | 158 | 285 | 128 | 9.8E-13 | ||
| Phobius | 167 | 197 | 31 | - | – | |
| Phobius | 198 | 215 | 18 | - | – | |
| TMHMM | 199 | 216 | 18 | - | – | |
| Phobius | 216 | 220 | 5 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 221 | 242 | 22 | - | – | |
| Phobius | 243 | 315 | 73 | - | – | |
| Coils | 297 | 315 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0124000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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