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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0129500 |
| Transcript ID | LotjaGi2g1v0129500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Citrate binding protein; TAIR: AT3G56040.1 UDP-glucose pyrophosphorylase 3; Swiss-Prot: sp|Q39962|CBPR_HEVBR Citrate-binding protein; TrEMBL-Plants: tr|A0A068VG98|A0A068VG98_COFCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0129500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47242212..47246532) extracted from Lotus japonicus Gifu genome v1.2.
TATAGAAGGAATCAAGTAGTTGAGCAAACGAAAATGATTAGCTATTACACTTTCATTCTATCTTTGATCCTCTTGTTCTC CCTGAAAAACTTAGTTTGTTGCGAAGATCCTACTTTTGGGTTCAGCTCTGTCCCATTGACGCAAGCAAATTTTAAGCTGC AGAAGCCATATGACACACCACTTGACCAAAGGTACAGCTATAAAGATGGAGTTCATCGATTGTGGGTTTATGCTGATGAC AAGCCTCATAATCCTAACAGCAACACTCAGCCACGCACTGAAATTCGTATTCAGGTGCTCTTCTTCTGCTTCGATTCACA TATATTTATTGAGAATTTTAAGGTGGATTCTGTTAAAGCTAAGTCATTTATGCTTTTACCTATAAATTTACTACATATAT ATTATTTACAATACGTTTTTTATGTGGTATATTAATTTGCAAACAAACTATTAAACTTGTGAATAAGCATAAAAACATCT CATTATATTGAAATTTAGATTGTCCCCTGAGGATAGCTTAAGTGGTAGGAGCTGGGGGACATATGTGTTGTGTAGGGGAG GTCCAGAGATAGATTCCTGGCGGATGCAATTTATATTTCCAATATACTAAAAAAAAGAACTTTAGGTTAGTTTTTTTTTT GACAAACTTTAGGTTAGTTATAGGCGCATAACGCGCGAATTAGAATAGAGAGATTGCATCTACATAGGGCTACATTGGGC TAAGAACGCAAGTGATTTGAATATCATTTACATATTTTAACCACAATACTCTCAGTCTTAACTTGAGTTTTAAATGCTTG TGACTTGCTCTCTTTTTTTTTTATTAAACCCGTTTTTTCAATAGATCATGAGTCAGTAGACATTTTTTACTTTGATACCA TATTATATATTTTTTACAAAGGCTCATAGTTGATTCATAACCCAAAGGGTTTCCTAACGACACTTACAACATACGAGAAT AAATCTCAACGAGCGATAACGCAATGCAAAACATAAGCTATTTGAGTACAAGCATTAACACTCAAGCAAATAAGCTGAAA CATCCAGCATAAAACATGATGTAAAAACCCTAAGGGCCATTCAAAAGCCCCTAAACCCCAAAACACCAGAGAGTCTGATT GACTTCTAGGCGGAGAATCTTTTATCTTCAGTTTTAACCAACGCTCTAGAAAAATAACTCACTCGGCTCTACCGTAGTTG CAATAGGTGCAGCTATCATAAAAGCCCAAGAACGACTTCAGCGACACCAACAGGGGCCGAACAATCTAGCATCTCTTAGA AGTGAGGGGATAAAAGGGAAGCTTTTGCATATCAGAAACAGGGAAGTGAAGGAGCCAACAGAGGCCGTGTGATAACAACA AACCAAACGGTGGAGTAAAGGATGAGCACGCAAAGAACGGCTCAAACCCCACTTCCACTTCTTCACCAAGACAAGACAAA CCAAAGCTGTTACCTTTCAACTCAAAGCTTTCACTTTTCTACCCATAACTCTCCTAGAAAGAACGATGAGGAGGATGACC TTAGATCTGGGTTATGGCGGTAACCTGTGTTGCGATGGTGCTTACGACATCTGTGGCGTTGAGGACTTGAGGTGGTGGCC GAACCAGCACTGGATCTGCAACAAGGCTCCCGTTGTCAGATGGAGGTGGGAGAGGCGGCCTAGGTGGAGAAAGGGATGAC AGGGGCAGAGGCTATGATGGCCAAGAGAAGGAAAAAAGATCCAAACAAAAACTAAGAAAAAACTTACTTATTTGGGTAAC AAATCCACCTAATGTGAAAGGAAACCCACCTATTGTGGGGAGAAGACCTATCTAGAGCAGGAAAGGACCCCCCTAAAGGA GGAGAAGCCCCCCAAAGAGCGAGGAACGACACTCTTTGTTTCAAACCCTAACATAGTGTTTTGCTGCTCTAAGTCAACCG TTAAAGTGCAAATCTAGCCAAGACATCCACATTAGCAAAGCGTTTTGATCACATTCATATTGGGCTAACAAAGACCTGGT TAAGACTTCCACATTCTACTTTAACAACAAACCCTTTTCACGACACTTGTTTTATTACAGTTTTAAAAACTATTTTTTTT TAAAACACTGGAAAATTTAAAATCATGTTAATCACAACTTGTTTTCAAAAAATTGTTTTTATTTTTCATTTTTTAAAACT AAATTATCATAACAGCGAGATGATTTTCTACTTCTGTTTTATTTATTAAATACAGTTTTTTTAATGTTGAAAATATCTCA TTCAAACAGTTATTTTTCTTCTTTCCTTTTGGAAAACAATATTCAAAAGTTGTTCCTAAAATTGTTTTTAAATATAGAAA ACTAAAATAGAAATTAAACAAGATATATTTCCTTATTTTTCATCTAATTTAGGATTTTTGTATCCATACTTGTATTGTAA CAGCTAATTAATATTTTGATTTTGCTATATAAATTTCATTTTGAGAACTCAATGAAAATATTGTGCTCTTACTTTTTTCT GGGTTACAATGGTGTTTAAGAGAAATAGGTCCTTTTCAAATTGCAAGGTTTATTAAAAACTACAGCAAATCTTAACCGTA TCAATATTATATATACAAGGTTTTTTTTTTGTTACAAGAGGGAGAAATTATATATACAAGGTTGCATATAAGAGTGAAAA AAATTCCTTGATTACCATTTACAAATTGTTCGACTTGGGCTGTACTTCATTCATGGGCCGGCACAAAGTTGCCAATGCTA AATCCAGTCCATTAAGTTATTGCGAGGAGTTGCTTGATTGTTGTAGGTTTCTGCATGTAACAACTAACTTTAGATACAGT TTTTGATTGACCAAAAACAAATACAGTTTTTGGTAACAATTTTCAAGAAGATGTTTTTCAACACTAAAGTAACTGTAATT TAAAAACTAAAAACAAATAACAAATCACATCTTTCTGTTCTAGTATTTTAGGTTTTAATACTTAAAATGAGATGTGTTTA TGAAACAGTTTTTGAAAGAGGTTGTGAGAAACATGTTTTTTCATTTTTTAAAATAAAATAAAAATTGTTTTCAAAAACTG TAATAAAACAAATCCTAGTATTACATGTTGAGGAGTGCTTGCAACACTCTTTTTAACACTTTTTCTAACGCTCTTTGTAT AATTTGTTAAAATTTATATATAGGTCTCACAAAGTTAGAAGTGAGATCCATATAATTTAGTGACTCTACATGAATTTTAA CCCATTAAAAAGAGTATTAGAAAGATATGTTAGCTTGTTCGATTACAAGTTTTAAGAACTGTTTTCTATTTTTAAAAACA GAAAAAACTTGTTTGTTTTAAAAGACTATTTTTATAAAAAGTTCTTAATTTAATTTTTAAAACTAAAATACTAGAAAAAT TAAAAGATGTTTTATGTTTCAATTTTATTTTTCATATTACAATTCTTTTATTGTCGAAAAACATCTAATTCAAACTATTT ATTTTTCTTGAAAATAATTTTTAAAAACAGTTTTCAAATACCGTGATAAAAAACTGCAATCAACGAGACCCATGCCAGGC CATATAATGTGAAACAAACTAGTCAGCATTTCCAGTTACATGTTATATATTGCTCCTAACATAAGCATTTACGTATCCAT TTATACATGCAGGGGCTTGACTACAACTGGGGGATTTGGCAATTTGAAGGTTATGGCTTTGTGCCAAATGGAACATCAGG TGCTACAGTAGCACAGATCCATGGTGCTGCGCATGCTGCTACCACACTGATACTAAGAATATACAACGCACACATGAGAT ATTACAGTAAAGATTTGGTGGCTGAGAATCTTTATGATAAATGGTTCAGACTTAACATCATCCATGATGTGTGTGGAGGA ACGGTGACTGTGTTCATAAATGGAGAGAAAAAGTTCCACACCAAGGATCATGGTCCAGGAGACTTGTACTTCAAGTGTGG TGTTTATGCTGCACCTAGTAACATTAGCTATTACATGGAATCAAGGTGGAGAGATATTAAAATATATAAGAAATGACAAG TTCCTTTTTCTAGCTAAAGTCTATTATCTTGCTAGAATTCCTTGGAACTATATGTATTTGTCATACCGTTTTCGGTTACT ACAAAATTGAAGTGTGTTATGACACTTGCAAAATCATACATAATTGTTTGGTTTGGGTGATCAGTGTAAAACATATGACT AAAATTTGGGTAAAATATATATATATATATATATATATATATGTGTGTGTGCTTTTCCCCCTCACATGTAAACTTAATAA TAGAAATCACGAAGAAGAAAGATCTTGAGAGTTCACAGTTTTCAAATAATAAGAATGATTGTGAAGTATTAACCTCTACC C
CDS sequence (LotjaGi2g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAGCTATTACACTTTCATTCTATCTTTGATCCTCTTGTTCTCCCTGAAAAACTTAGTTTGTTGCGAAGATCCTAC TTTTGGGTTCAGCTCTGTCCCATTGACGCAAGCAAATTTTAAGCTGCAGAAGCCATATGACACACCACTTGACCAAAGGT ACAGCTATAAAGATGGAGTTCATCGATTGTGGGTTTATGCTGATGACAAGCCTCATAATCCTAACAGCAACACTCAGCCA CGCACTGAAATTCGTATTCAGGGGCTTGACTACAACTGGGGGATTTGGCAATTTGAAGGTTATGGCTTTGTGCCAAATGG AACATCAGGTGCTACAGTAGCACAGATCCATGGTGCTGCGCATGCTGCTACCACACTGATACTAAGAATATACAACGCAC ACATGAGATATTACAGTAAAGATTTGGTGGCTGAGAATCTTTATGATAAATGGTTCAGACTTAACATCATCCATGATGTG TGTGGAGGAACGGTGACTGTGTTCATAAATGGAGAGAAAAAGTTCCACACCAAGGATCATGGTCCAGGAGACTTGTACTT CAAGTGTGGTGTTTATGCTGCACCTAGTAACATTAGCTATTACATGGAATCAAGGTGGAGAGATATTAAAATATATAAGA AATGA
Protein sequence (LotjaGi2g1v0129500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISYYTFILSLILLFSLKNLVCCEDPTFGFSSVPLTQANFKLQKPYDTPLDQRYSYKDGVHRLWVYADDKPHNPNSNTQP RTEIRIQGLDYNWGIWQFEGYGFVPNGTSGATVAQIHGAAHAATTLILRIYNAHMRYYSKDLVAENLYDKWFRLNIIHDV CGGTVTVFINGEKKFHTKDHGPGDLYFKCGVYAAPSNISYYMESRWRDIKIYKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 6 | 214 | 209 | 3.2E-119 | – | |
| PANTHER | 6 | 214 | 209 | 3.2E-119 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 23 | 6 | - | – | |
| Phobius | 24 | 214 | 191 | - | – | |
| Gene3D | 35 | 213 | 179 | 5.8E-6 | – | |
| SUPERFAMILY | 37 | 209 | 173 | 1.08E-13 | ||
| Pfam | 38 | 212 | 175 | 2.7E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0129500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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