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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0130000 |
| Transcript ID | LotjaGi2g1v0130000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SET domain protein; TAIR: AT1G43245.1 SET domain-containing protein; Swiss-Prot: sp|Q3ECY6|SDG41_ARATH Protein SET DOMAIN GROUP 41; TrEMBL-Plants: tr|K7MHR5|K7MHR5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0130000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47336342..47340288) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTAAACCCAGCCAAAGTCTTATTTTCTCCTCCTTGGAAACACAGAAGTTGAAGACAGATTCATGCTATGGAAATGG AGATGGAGATGAAATGCATGGAAGACATTGACATAGCAACTGACCTAACCCCAACACTCTCCCCTCTCTCTTTCTCTCTC CACAATTCCCATCTCCACACTCACTGCTCCGCATGTTTCTCTCCCCTCCCCAATCCCAATCCCCATTCCCTCTTTTACTG CTCCCCTCTCTGCTCCGCCGCACATTCCGCTCTCCGCCTCTCCTCCGCCGACTCCTCTCTCCTCCGCACCGCCCTCCGCC TCCTCCTCCACCACCGTCCCTCCTCCACTGGCCGGATCGCCGGACTGCTCTCTAACCGCCACCTGCTGACGTGCCCTAAC CTCTCTCCCTCCCACGATGACGTGTCGGTCTCCGATAGCGTCAGGGCCATGGCCGCCGCGATTGCGAAACAACGCGGCGG CCGCGAACAGGACGACGCCGTTCTGGAGGACGCCACTGTTGCTCTCTGCGCTGTGCTAACGAACGCCGTGGAGGTGCACG ATAGCCAAGGGTGCGCCCTCGGGATTGCGGTTTTCGAACCTGCGTTCTCTTGGATCAACCACAGTTGTTCACCCAATGCG TGTTACCGCTTCACCTTCAAGTCCCTTTCTTCTGATGAAGCGAAGCTTCGCATTGCTCCGTTCAATTCTCAACAATCAAT GGTACATTTTTTTCTGCTTGCTTGCTTGTGAGAATTTTCTGCTTGTGATCATTGCTGAGGTGAAAATTGTGTTTTGTAGA TAGATAGTGAGGTTTGTGGTGGCAGTAGTGAATTTGGAAAAGGTGTGCATCTTTTAAACTCTATCTATGTTATAATTATA ATAAGCTTGTTTTTGCATTAACAAAACTAATTGGGGGTGATATTTATGCATGAAAAAGAATGGGAACTGGGCTATGGTCC AAGATTGATTGTGAGGAGTATCAAGAGAATAAACAAGGGAGATGAGGTGACTGTAGCATATACTGACCTCTTGCAACCTA AGGTATGCATCGAATCAATGTTTTGAATTGCTCTTATGTGATTATCATTTGATATTGCGGAAAATTGTGGACAAATGCGA CTTCTAATGTGGTCACCGTGCAATCATTGAGGCTTGCAGACTGTGATTTTAAACCATGGTTGTAATTGTGAATTTATAAT TATTGTTGTTCTTGTTAGTCAGGCATACAAGTTGGCCTTTGTGTTATTGAGTTAAAAGATTTGATGAGCGTTCCCATGGT TATGTTTAGGAATATTATACAATTAACTATCAAATCTATGGATGGGGACCCTGTATGATGCACTTATGAAATCTGGGGTA TGAACACTTCTAATTAAAAGAATAGTTATGCATATATTAAGACAATAACACTTGGACATTCTTGACAGGAGAGTTCAAAT CTTAATGAATTGAGGGAATGCATAATTTTGTTGTCTCAGTGTAGATGTCTATAATGTGTCCTGTGTATGCATCAATGTCC ATAGGCTGTACTGATTTTGGGGGGGTTGCTAGTTACTAATTTATTGGCCTTGTCATCTCTGCTCTTATGGGAAAGAACAA TTCTTGAAAGGCAATAGTTATCTTTGATTCTAAAATCTATCTCCTTTCTGGGTAGCTTATATTATCTATTATTTTACTTC TCTCCCTCATATTTACTTTCATGTTTATATTTATTTTACGCTTTCAATGAAATTTGGAAATTTAGGAAATTGGCATCTCA AAGCAAAATTATCTGGTAAATCATAAATTTAAATACCTCACAAATTAGTTGAAATTGTACTTACTTTTTTTCTCATGAAT ATTTTTACGCATGAAAATTTTAGTTTTTGTTTTCTTCCTCTTTCTTGGCTCTTCACTAAGATCCTTCACTTCTTTTTGAT ATATTAATAAGCTTCTGGATGCCCTAATCTCAATTTAGTTTGCTTTTCTAGGCAATGAGGCAATCAGAGTTATGGTCAAA GTACCGGTTTAATTGTTGTTGCCAACGATGTAGTGCCCTGCCCTTCACATATGTGGATCATGCATTGCAAGTAAGACTTT GAAACACTGGAAGTGGGACACCTTACTGATAATATTATTATTGACTGCCATAACGATTGTTATTCAGGAAATTTCTGTTT ATAGTCGTGATTCATCTGGTTCATGTTCCAATTACGAGCTCTTCAGAGACATGGTTGATAGTAGACTAGCCGAGTGCATT GACAATGTTATATCAGAGTATCTTTCCGTTGGTGATCCTGACTCTTGTTGTGAAAAACTTGAGAAGATACTTATGCTAGG TCTAGATGAGCAGTTAGAAATTGGTGAAGGAAAACAGCATTCAAAATTCATCCTGCATCCCCTACATCACCTTTCTCTAA TTGCTTACACAACACTGGCTTCAGCATATAAAGTTCGCGGGAGTGATTTATTGTGTGTAGGTTCTGAAATCAATCTAGAT CAGTTTGAAGCTTTTGACATGAGCAGGATCAGTGCAGCATATTCTTTGCTACTTGCAGGTGCAACTCATCATCTCTTCAA ATTTGAATCCTCACTGATTGCTTCAATTGCAAATTTTTGGACTGGTGCTGGTGAATCTTTGTTATCTCTCACCAGAAATT CAGGATGGAATAAGTTTGTTGAATTGGGTCTGGTTGTTTCAAAACTTCCTTCTATCAGGATGTTAAAATGCTCCAAGTGT TCATTGATGGTTAGATTTAGAGCTTGTATATCAAATGGTCAAATTAAAAGTGCAGATTTTGAGACTGTATCGAATGAGTT CCTTCACTGCGTCTCACATATTACTCAGAAAGTTTGGAGTGTACTTGTCTATGGTTGCAATTTTATGAGATCATGTAAAG ATCCTATCAATTTCAGCTGGCTATGGTCTACAAAAAATTCCATTACAGTTGATATTGGGCCTCATGGTAATAAAACTAAC ACAGGTAACACTCGTGAATCTGAGAATAACATCCATATTTGTGAAGGAAAAGCTTACAATGATCATGTAGTAAATGATAT TTTTTTGCTAAGTGTACACTGCTTAACATATGGAGGATTGTTGGCTAGTATATGTTATGGTCCCCATTCCCATTTGTCTT GCCATGTTCAAAATATTCTTGGTGAATTATATTGTCATGATGAAATTTGAGGGGTCATGTATGATACCTTGTGAAAAATC TGTGTGAACATGAATTCAAATTATTTTTTGCCCTTTTAGTATCTGAATGGTTAAGGTGCCGTAGGGGTTTGTTTTTGGTG CCTATAAGATTGAAGATTGATGTGATGATAAAGTTTGGGAAATGGTGCTTCGGAGAAGACTTGTATGGCTGAGAAATGAA GATAAAAGAAATGACTTGATAATGAAGCACAAAAGCAAGACATTAGAGATGAACGATAGAGACTATTCAAATAAGTGGGC TTGAAAGTTTTTACAAAAGTATAGAGCAGCTTTGGGTGGTGCAATTGCCATGAGTTGCAATTAGTAATTTTATCTATTTT TTCGACCTTTCCATAATGTTATATTATTTTTATTACTTAAGGGCCCGTTTGGTATGTTGTATAGTATAAGGCCTGATAGT ATACGACCTGATTGTATTAGGCCTGATAGGATAAGGCTTGATAAAATTTTAATACTATACATCGTTTGATCATACACTAT ATAATTTGGTGACAACAGTGATGGTGGTGGTATTGGAAGGTGATGGTGGTGGCAGTGGTGGTGAAAGTAGTGGCGGTAGA AGCGATGGTGATAGTGACACGTTCCACCACTACCACCACCGTTGATACTGTCATCGTTATCGCCACTACTACGACCAACG CCGCCGACACTCTCCACCACCACTATCGCCACCACCACCACTTTCGCCGCCACCACCACCACACTCCACTATTGCCACCA TCGTTGATAACATCATCATTATCGCCA
CDS sequence (LotjaGi2g1v0130000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGGAGATGGAGATGAAATGCATGGAAGACATTGACATAGCAACTGACCTAACCCCAACACTCTCCCCTCTCTC TTTCTCTCTCCACAATTCCCATCTCCACACTCACTGCTCCGCATGTTTCTCTCCCCTCCCCAATCCCAATCCCCATTCCC TCTTTTACTGCTCCCCTCTCTGCTCCGCCGCACATTCCGCTCTCCGCCTCTCCTCCGCCGACTCCTCTCTCCTCCGCACC GCCCTCCGCCTCCTCCTCCACCACCGTCCCTCCTCCACTGGCCGGATCGCCGGACTGCTCTCTAACCGCCACCTGCTGAC GTGCCCTAACCTCTCTCCCTCCCACGATGACGTGTCGGTCTCCGATAGCGTCAGGGCCATGGCCGCCGCGATTGCGAAAC AACGCGGCGGCCGCGAACAGGACGACGCCGTTCTGGAGGACGCCACTGTTGCTCTCTGCGCTGTGCTAACGAACGCCGTG GAGGTGCACGATAGCCAAGGGTGCGCCCTCGGGATTGCGGTTTTCGAACCTGCGTTCTCTTGGATCAACCACAGTTGTTC ACCCAATGCGTGTTACCGCTTCACCTTCAAGTCCCTTTCTTCTGATGAAGCGAAGCTTCGCATTGCTCCGTTCAATTCTC AACAATCAATGATAGATAGTGAGGTTTGTGGTGGCAGTAGTGAATTTGGAAAAGAATGGGAACTGGGCTATGGTCCAAGA TTGATTGTGAGGAGTATCAAGAGAATAAACAAGGGAGATGAGGTGACTGTAGCATATACTGACCTCTTGCAACCTAAGGC AATGAGGCAATCAGAGTTATGGTCAAAGTACCGGTTTAATTGTTGTTGCCAACGATGTAGTGCCCTGCCCTTCACATATG TGGATCATGCATTGCAAGAAATTTCTGTTTATAGTCGTGATTCATCTGGTTCATGTTCCAATTACGAGCTCTTCAGAGAC ATGGTTGATAGTAGACTAGCCGAGTGCATTGACAATGTTATATCAGAGTATCTTTCCGTTGGTGATCCTGACTCTTGTTG TGAAAAACTTGAGAAGATACTTATGCTAGGTCTAGATGAGCAGTTAGAAATTGGTGAAGGAAAACAGCATTCAAAATTCA TCCTGCATCCCCTACATCACCTTTCTCTAATTGCTTACACAACACTGGCTTCAGCATATAAAGTTCGCGGGAGTGATTTA TTGTGTGTAGGTTCTGAAATCAATCTAGATCAGTTTGAAGCTTTTGACATGAGCAGGATCAGTGCAGCATATTCTTTGCT ACTTGCAGGTGCAACTCATCATCTCTTCAAATTTGAATCCTCACTGATTGCTTCAATTGCAAATTTTTGGACTGGTGCTG GTGAATCTTTGTTATCTCTCACCAGAAATTCAGGATGGAATAAGTTTGTTGAATTGGGTCTGGTTGTTTCAAAACTTCCT TCTATCAGGATGTTAAAATGCTCCAAGTGTTCATTGATGGTTAGATTTAGAGCTTGTATATCAAATGGTCAAATTAAAAG TGCAGATTTTGAGACTGTATCGAATGAGTTCCTTCACTGCGTCTCACATATTACTCAGAAAGTTTGGAGTGTACTTGTCT ATGGTTGCAATTTTATGAGATCATGTAAAGATCCTATCAATTTCAGCTGGCTATGGTCTACAAAAAATTCCATTACAGTT GATATTGGGCCTCATGGTAATAAAACTAACACAGGTAACACTCGTGAATCTGAGAATAACATCCATATTTGTGAAGGAAA AGCTTACAATGATCATGTAGTAAATGATATTTTTTTGCTAAGTGTACACTGCTTAACATATGGAGGATTGTTGGCTAGTA TATGTTATGGTCCCCATTCCCATTTGTCTTGCCATGTTCAAAATATTCTTGGTGAATTATATTGTCATGATGAAATTTGA
Protein sequence (LotjaGi2g1v0130000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMEMEMKCMEDIDIATDLTPTLSPLSFSLHNSHLHTHCSACFSPLPNPNPHSLFYCSPLCSAAHSALRLSSADSSLLRT ALRLLLHHRPSSTGRIAGLLSNRHLLTCPNLSPSHDDVSVSDSVRAMAAAIAKQRGGREQDDAVLEDATVALCAVLTNAV EVHDSQGCALGIAVFEPAFSWINHSCSPNACYRFTFKSLSSDEAKLRIAPFNSQQSMIDSEVCGGSSEFGKEWELGYGPR LIVRSIKRINKGDEVTVAYTDLLQPKAMRQSELWSKYRFNCCCQRCSALPFTYVDHALQEISVYSRDSSGSCSNYELFRD MVDSRLAECIDNVISEYLSVGDPDSCCEKLEKILMLGLDEQLEIGEGKQHSKFILHPLHHLSLIAYTTLASAYKVRGSDL LCVGSEINLDQFEAFDMSRISAAYSLLLAGATHHLFKFESSLIASIANFWTGAGESLLSLTRNSGWNKFVELGLVVSKLP SIRMLKCSKCSLMVRFRACISNGQIKSADFETVSNEFLHCVSHITQKVWSVLVYGCNFMRSCKDPINFSWLWSTKNSITV DIGPHGNKTNTGNTRESENNIHICEGKAYNDHVVNDIFLLSVHCLTYGGLLASICYGPHSHLSCHVQNILGELYCHDEI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 631 | 627 | 7.9E-219 | – | |
| SUPERFAMILY | 161 | 287 | 127 | 5.05E-13 | – | |
| Pfam | 176 | 259 | 84 | 2.5E-7 | ||
| Gene3D | 261 | 399 | 139 | 9.9E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0130000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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