Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0131300 |
| Transcript ID | LotjaGi2g1v0131300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G43640.1 tubby like protein 5; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|A0A067K3J2|A0A067K3J2_JATCU Tubby-like F-box protein; Found in the gene: LotjaGi2g1v0131300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47578109..47583014) extracted from Lotus japonicus Gifu genome v1.2.
CAGCCTTTTGTGCTTGGGGTTTGTAGTATTAGTTCATTCTGGGTGGGAATAAATAAATGCTGGAGTGCGCATTTCGCAGA GTCAGAGGCGGTGTCACAGACACGGAAAATGAAAGAGAGAGAAACAACTAACACATGGATGGAGCTAAAGAACGAGAAAC ACTACTACTAACGTTGCTTCCTAGAACATGAAGGTCAGTTTCTTCTTCTTCTTCTCATGTTCCTTCCTTTTTCTTAGGTT TTACTTTCAGTCCATTTCTACTATTTTGCAACAAATAATTCCCTCCTTTTTATCATTAGTTTATGTTGTAGCCTTTATTG TTAGCTCCACCAAATTTTTATTTTTTTTCATTTGTTCTCAATTTGGTTGAAGTTTTTCCTTGGAAATTCTAGACTCTGAA TTTTTCATGGTCTGATTAGCAGTTTCTGAAGTTTGCTCTTCTGGGTTCTCTTTGCATCTTCTGAAAAATTCAATTTTTAT TTTTTCTAGTTTAAGCCTTTGTGGAATTTTCATCTGGGTTTGATTTGGTGAGTTTTTGGTTTATGTAAATAGAAAAATGT TTTTTTTTTTCAGAATTTGGTTTCTGGTTCTAGGAGAAGTTTGATGTTCTGTTTTTCTAAAGTTGTTATAATTTATTGGT TGAAGTGGGTACCTCTGATACTTTTGTTTTCTTTACAGATATCTTGTGATTAGGGTGGGCAGGGAGCCTAATTTCTCACT GAAGTTTCTGTCTTTGAGGTTTGTTATCTCAACTGCACATTGCATGTCTTGTTTTCTGATGTGGGGTCTGTGTATGTGTG AGAGATAATACTAAAACATTAGTGAAGATGCATAAGAATTTCTTTATCTCTTTTAATGCAAAGTAGATGTATAATGTATT AGGCTTATTAACTAGTGACTGATGATGCTACTACAGGTTGCCCCTTTGCCCTTTTTATTTATTATTTTTTCTTTCTTTGT GGTGAAAAGGTAGGTTGGTTGATACCAGCTCAATCTTTTGGTAAGATTCTGGTTTGGCTTTGATTGATCTTTTAAGATGT TAGATTTAGGGGGTTCAACTGTTGAATATAATGTTTAAAAAATAACCAAAAAACATGTTTCTGACAACATTCTGAAGTTT TTGGCTGCTTTAGACTTTAGGTTCATGTGAGCCTTCCTTTTTATAGGAATCTCCTTTGCTTTTTCCTTTGTGCTTTTCCC TATCAGCCTTAGTGACTAAGCATTGTAGCCGGAATTTAAAATTGAAGTTTGTTTGATTTGCAGCTCTTCCCTCGCCTAAG ACTTGTGAGTTGTGACATCATCTAACTAGAGTGGATTACCGGAAAATTATCCTGTACATGTAAAATGTCCTTCCGGGGTA TTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCCCGGCCATCACAGGGGC AAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGGCTAGCCTTCCACCTGA GCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCACGTGGTTGCCTGTGCTG CTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAAGATTACTTTCCCTGTT TCACTAAAGCAGGTAATGCTTTCGTAATCTTCTACCATTTGTTCCAGATATATTTTAATGGAACTCGTTAATGCATAAGA AATATACATTTTGCACATGAGTGAATGAATTTGCTTTTCGCTTTTTTATTGACCCTTGCTTTACAGCCTGGTGCTAGGGA CGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGGTAAGT TCAAGCTCTTTGCAATGGCCTACTTTTTGTTTACTGTGTTCATTTAGTTGAGCAATTATTTTCTGGTTGCCAAGGTATGG AATGGATAGTTGATACTGTTTGTTTGGAAGCTTGTCTATCATCCTTTTAAACGATATTAAGAGCATAATATGGGGCATAC TGTTGTGTTAAGAAATTTTTTCTGTGTTATGCTTAAGTTATCTCTGTAAAGCCAAGGTTAGCTGGAAGCTGGGAATCATG AGCACGTTCATGGCTTCATGGCTCATGCTCCATTTTTTTCATTCTTCTTGAAATAGCCAACTTCTAATTTTAGTCTATTG ATTTAAGTGCTTGCTATGCTGGCTACTCAAATGGCACAAGTAGTTCCATAGTTTGATTGAAATGCTATCAATATATCTCT ATAGCCTATAAACATATATTAGAAATTTTGTGAACTTGGTTGTCATTGTCTCTGCACTGGGATATGTTTTGAATTACAAT TTTTCCTGCAGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCAGAAGAACGACATGCACTGAGT ACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGAAAACTAAGGTATTTTGGAATTCTA GTTTCTTTTTCTCCCTGAGCACCTTCAATCATTGTTTTTGACTAATTTCTGGTTTAAATGAGGTGGAAAGGAGCAAAACA TTTTGCAGTTTTCTTGAAAGTTAATTCTTTGCAGAATATAATTTTGAGTATGATCTTGAGATGGCTGGAATTAGTTGCTA CTTGCTATACTTTCAACAGATTTTTCTATTGTCTAGTATTGGATATCTATTGATGTTTCTGTGTCCTCCCCTGCTTGCTT ACTAGCAAGAGTTCGGTATGTCTAGTAAATCTTATTACTGGGCTCTTGATTGCATCTACAATTACTACTGCTGAATATGC CCCTTCTTATGTTGAATATTTCCCTTCTTATACAGGTAACTTAAAAGATATGAATGAATTTCCTGGCTGTAACTTACTTT TGATGTTTCATAAGCAATGCCGAATTTGTATTCTGATAGAAATCGGTATCATATTAGAAAGAATCAAAGAAATAATGATA GGGATTTACCCCAATTATAATGATAGAAAACACTGTTCTAGTTGCAACCTCCTAATGCCTAAAGGTCCCCCCCCCCCCCC AACACTCTGAAAATGACTAGACACTTCTCCTGCTCACCCCCTCTTCCTATTTATACTCAATATGCCTTATCCATTAATCT AACCAATCTATTACCTTACTTTTCCTATTATACCCATGCACTTTTTTCCTTCCTGAATTCTATATTCTCACCTCTGTTAA TCATCTTATATTTGTTCATCTAATTTTGCGATGATCATAATTTTCATCCATGTGGTTACCTCTTAATTTTGATGTGCGTG TGTCTGTAATAATACACAAGAAATCACTTTCTGTGTAGTTTCCTTGCATACAATCTTATACTGTGTAAATTCCCCCCCCC CCCCCCCCAATTGCAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCCCTACAACAATGCTCAG CTGTCTCCTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTGGCAGCTACAATATTGC CCAGATCACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATGCACTCAATCCCTATGT CAGCCCTTGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGATTCATTCCGCAGCATA TCCTTCGCAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTGGGACCAGCAATGAAGA GGAGGGAAAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTCAACT TCAGGGGTAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGCCGCCGGTGCTCCTACA CCATCTCAACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGGACATGTTTACCATGGA CTATAGATATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAAT GACAGGAAATATGGTAAAAGTAGTATTCATCTGCATTTATGTTTTCACAATATGGTGAACCTGCATGGAGTCAGACTACA CTACACCTCATAGTTTAACTGTAAAGTACAGAACATCCTATGGCCCATTATATTTTCTTCTATCTTGTTCGTTGTCTGTT TTACCTTTTTTTTCTGTCGAACTTCTTTGTTGCTCATACTCATCATGGGCAAAAGATGTAACTTGGTTAGAATTTAATAC CATTTATGCTTACATGTAATGGAAATGTATGTGTTTGCCCAGTGACAAGAATCTTGATTGCTTTTGGGGGACTTAGATTG GTGTGAAACTGTGAGTGCAACCAAATGTCAATTGCCTAAATGCTGAACTTACAAATTCATCGAGAATTCGAGATGATTGC TAAATGTTCTTTCATTCTCCAATTTTTCTCATTTTCCTCCCTCCTAATCTACTGTTTGGTACTATCAAAATATTGTTAAA AAATACATCAGGTTCTTACAAGTGTTGTTAGATTTCCGTTGAACTTGATGTAGATTCATGTTGAGCTTGATGTAGTAAAA CTTTACTTTTCCAATCTACCTTAAAGTTTTACTTTTCCAATCTACCTTAAATTAAATGTGCTATATTTTGATATATGTGA AATCACGTTTGCATTTATATCAATGTTGGATAAAGGAGCTTTGTAAGGGGTTGGAATGATTTTGGCATGCGTAAAGTGAA TCAAAAGATGGTAGTTGATAGATAAA
CDS sequence (LotjaGi2g1v0131300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCC CGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGG CTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCAC GTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAA GATTACTTTCCCTGTTTCACTAAAGCAGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTA ATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGG AGCAGAAGAACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGG AAAACTAAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCCCTACAACAATGCTCAGCTGTCTC CTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTGGCAGCTACAATATTGCCCAGATC ACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATGCACTCAATCCCTATGTCAGCCCT TGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGATTCATTCCGCAGCATATCCTTCG CAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTGGGACCAGCAATGAAGAGGAGGGA AAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTCAACTTCAGGGG TAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGCCGCCGGTGCTCCTACACCATCTC AACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGGACATGTTTACCATGGACTATAGA TATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAA
Protein sequence (LotjaGi2g1v0131300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRGKSNSSVYELKEQPPIIQNSRWASLPPELLRDVINRLEASESTWPARKH VVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGARDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKR SRRTTCTEYIISIDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQI TYELNVLGTRGPRRMNCTMHSIPMSALEPGGAVPGQPELLPRSLEDSFRSISFARSIDNASEFSSSRFSDIIGTSNEEEG KDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTLSDHDKTILQFGKVGKDMFTMDYR YPLSAFQAFAICLTSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 423 | 423 | 1.3E-250 | – | |
| PANTHER | 1 | 423 | 423 | 1.3E-250 | – | |
| SUPERFAMILY | 45 | 96 | 52 | 1.83E-6 | ||
| Pfam | 52 | 102 | 51 | 6.5E-10 | ||
| Gene3D | 53 | 98 | 46 | 2.0E-5 | – | |
| SUPERFAMILY | 102 | 423 | 322 | 1.2E-102 | ||
| Pfam | 116 | 418 | 303 | 4.9E-100 | ||
| PRINTS | 169 | 185 | 17 | 1.2E-78 | ||
| PRINTS | 185 | 209 | 25 | 1.2E-78 | ||
| PRINTS | 234 | 261 | 28 | 1.2E-78 | ||
| PRINTS | 327 | 344 | 18 | 1.2E-78 | ||
| ProSitePatterns | 345 | 358 | 14 | - | ||
| PRINTS | 345 | 361 | 17 | 1.2E-78 | ||
| PRINTS | 380 | 399 | 20 | 1.2E-78 | ||
| PRINTS | 401 | 423 | 23 | 1.2E-78 | ||
| ProSitePatterns | 408 | 423 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0131300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…