Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi2g1v0131300 |
Transcript ID | LotjaGi2g1v0131300.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Tubby-like F-box protein; TAIR: AT1G43640.1 tubby like protein 5; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|A0A067K3J2|A0A067K3J2_JATCU Tubby-like F-box protein; Found in the gene: LotjaGi2g1v0131300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47578856..47581670) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCC CGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGG CTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCAC GTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAA GATTACTTTCCCTGTTTCACTAAAGCAGGTAATGCTTTCGTAATCTTCTACCATTTGTTCCAGATATATTTTAATGGAAC TCGTTAATGCATAAGAAATATACATTTTGCACATGAGTGAATGAATTTGCTTTTCGCTTTTTTATTGACCCTTGCTTTAC AGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTATTCCTTTGT CTTAGTCCTGGTAAGTTCAAGCTCTTTGCAATGGCCTACTTTTTGTTTACTGTGTTCATTTAGTTGAGCAATTATTTTCT GGTTGCCAAGGTATGGAATGGATAGTTGATACTGTTTGTTTGGAAGCTTGTCTATCATCCTTTTAAACGATATTAAGAGC ATAATATGGGGCATACTGTTGTGTTAAGAAATTTTTTCTGTGTTATGCTTAAGTTATCTCTGTAAAGCCAAGGTTAGCTG GAAGCTGGGAATCATGAGCACGTTCATGGCTTCATGGCTCATGCTCCATTTTTTTCATTCTTCTTGAAATAGCCAACTTC TAATTTTAGTCTATTGATTTAAGTGCTTGCTATGCTGGCTACTCAAATGGCACAAGTAGTTCCATAGTTTGATTGAAATG CTATCAATATATCTCTATAGCCTATAAACATATATTAGAAATTTTGTGAACTTGGTTGTCATTGTCTCTGCACTGGGATA TGTTTTGAATTACAATTTTTCCTGCAGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCAGAAGA ACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGAAAACTAAG GTATTTTGGAATTCTAGTTTCTTTTTCTCCCTGAGCACCTTCAATCATTGTTTTTGACTAATTTCTGGTTTAAATGAGGT GGAAAGGAGCAAAACATTTTGCAGTTTTCTTGAAAGTTAATTCTTTGCAGAATATAATTTTGAGTATGATCTTGAGATGG CTGGAATTAGTTGCTACTTGCTATACTTTCAACAGATTTTTCTATTGTCTAGTATTGGATATCTATTGATGTTTCTGTGT CCTCCCCTGCTTGCTTACTAGCAAGAGTTCGGTATGTCTAGTAAATCTTATTACTGGGCTCTTGATTGCATCTACAATTA CTACTGCTGAATATGCCCCTTCTTATGTTGAATATTTCCCTTCTTATACAGGTAACTTAAAAGATATGAATGAATTTCCT GGCTGTAACTTACTTTTGATGTTTCATAAGCAATGCCGAATTTGTATTCTGATAGAAATCGGTATCATATTAGAAAGAAT CAAAGAAATAATGATAGGGATTTACCCCAATTATAATGATAGAAAACACTGTTCTAGTTGCAACCTCCTAATGCCTAAAG GTCCCCCCCCCCCCCCAACACTCTGAAAATGACTAGACACTTCTCCTGCTCACCCCCTCTTCCTATTTATACTCAATATG CCTTATCCATTAATCTAACCAATCTATTACCTTACTTTTCCTATTATACCCATGCACTTTTTTCCTTCCTGAATTCTATA TTCTCACCTCTGTTAATCATCTTATATTTGTTCATCTAATTTTGCGATGATCATAATTTTCATCCATGTGGTTACCTCTT AATTTTGATGTGCGTGTGTCTGTAATAATACACAAGAAATCACTTTCTGTGTAGTTTCCTTGCATACAATCTTATACTGT GTAAATTCCCCCCCCCCCCCCCCCAATTGCAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCC CTACAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTG GCAGCTACAATATTGCCCAGATCACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATG CACTCAATCCCTATGTCAGCCCTTGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGA TTCATTCCGCAGCATATCCTTCGCAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTG GGACCAGCAATGAAGAGGAGGGAAAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAG TGCTGGTGTCTCAACTTCAGGGGTAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGC CGCCGGTGCTCCTACACCATCTCAACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGG ACATGTTTACCATGGACTATAGATATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAA CTGGCATGTGAATAA
CDS sequence (LotjaGi2g1v0131300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCC CGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGG CTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCAC GTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAA GATTACTTTCCCTGTTTCACTAAAGCAGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTA ATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGG AGCAGAAGAACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGG AAAACTAAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCCCTACAACAATGCTCAGCTGTCTC CTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTGGCAGCTACAATATTGCCCAGATC ACGTATGAGTTGAATGTCTTGGAACTCCTTCCCCGCTCCCTTGAGGATTCATTCCGCAGCATATCCTTCGCAAGATCAAT TGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTGGGACCAGCAATGAAGAGGAGGGAAAAGACAGAC CACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTCAACTTCAGGGGTAGGGTGACT GTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGCCGCCGGTGCTCCTACACCATCTCAACCAACACT GTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGGACATGTTTACCATGGACTATAGATATCCCCTCT CTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAA
Protein sequence (LotjaGi2g1v0131300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRGKSNSSVYELKEQPPIIQNSRWASLPPELLRDVINRLEASESTWPARKH VVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGARDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKR SRRTTCTEYIISIDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQI TYELNVLELLPRSLEDSFRSISFARSIDNASEFSSSRFSDIIGTSNEEEGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVT VASVKNFQLIAATQPAAGAPTPSQPTLSDHDKTILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 247 | 247 | 2.0E-225 | – | |
PANTHER | 1 | 247 | 247 | 2.0E-225 | – | |
SUPERFAMILY | 44 | 96 | 53 | 1.83E-6 | ||
Pfam | 52 | 102 | 51 | 5.8E-10 | ||
Gene3D | 53 | 98 | 46 | 1.8E-5 | – | |
SUPERFAMILY | 102 | 393 | 292 | 2.17E-93 | ||
Gene3D | 110 | 393 | 284 | 1.8E-95 | ||
Pfam | 116 | 388 | 273 | 1.4E-92 | ||
PRINTS | 169 | 185 | 17 | 1.6E-65 | ||
PRINTS | 185 | 209 | 25 | 1.6E-65 | ||
PRINTS | 234 | 261 | 28 | 1.6E-65 | ||
PANTHER | 249 | 393 | 145 | 2.0E-225 | – | |
PANTHER | 249 | 393 | 145 | 2.0E-225 | – | |
PRINTS | 297 | 314 | 18 | 1.6E-65 | ||
ProSitePatterns | 315 | 328 | 14 | - | ||
PRINTS | 315 | 331 | 17 | 1.6E-65 | ||
PRINTS | 350 | 369 | 20 | 1.6E-65 | ||
PRINTS | 371 | 393 | 23 | 1.6E-65 | ||
ProSitePatterns | 378 | 393 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0131300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…