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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0131300 |
| Transcript ID | LotjaGi2g1v0131300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubby-like F-box protein; TAIR: AT1G43640.1 tubby like protein 5; Swiss-Prot: sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8; TrEMBL-Plants: tr|A0A067K3J2|A0A067K3J2_JATCU Tubby-like F-box protein; Found in the gene: LotjaGi2g1v0131300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:47578856..47581670) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCC CGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGG CTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCAC GTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAA GATTACTTTCCCTGTTTCACTAAAGCAGGTAATGCTTTCGTAATCTTCTACCATTTGTTCCAGATATATTTTAATGGAAC TCGTTAATGCATAAGAAATATACATTTTGCACATGAGTGAATGAATTTGCTTTTCGCTTTTTTATTGACCCTTGCTTTAC AGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTATCACCTATTCCTTTGT CTTAGTCCTGGTAAGTTCAAGCTCTTTGCAATGGCCTACTTTTTGTTTACTGTGTTCATTTAGTTGAGCAATTATTTTCT GGTTGCCAAGGTATGGAATGGATAGTTGATACTGTTTGTTTGGAAGCTTGTCTATCATCCTTTTAAACGATATTAAGAGC ATAATATGGGGCATACTGTTGTGTTAAGAAATTTTTTCTGTGTTATGCTTAAGTTATCTCTGTAAAGCCAAGGTTAGCTG GAAGCTGGGAATCATGAGCACGTTCATGGCTTCATGGCTCATGCTCCATTTTTTTCATTCTTCTTGAAATAGCCAACTTC TAATTTTAGTCTATTGATTTAAGTGCTTGCTATGCTGGCTACTCAAATGGCACAAGTAGTTCCATAGTTTGATTGAAATG CTATCAATATATCTCTATAGCCTATAAACATATATTAGAAATTTTGTGAACTTGGTTGTCATTGTCTCTGCACTGGGATA TGTTTTGAATTACAATTTTTCCTGCAGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGAGCAGAAGA ACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGGAAAACTAAG GTATTTTGGAATTCTAGTTTCTTTTTCTCCCTGAGCACCTTCAATCATTGTTTTTGACTAATTTCTGGTTTAAATGAGGT GGAAAGGAGCAAAACATTTTGCAGTTTTCTTGAAAGTTAATTCTTTGCAGAATATAATTTTGAGTATGATCTTGAGATGG CTGGAATTAGTTGCTACTTGCTATACTTTCAACAGATTTTTCTATTGTCTAGTATTGGATATCTATTGATGTTTCTGTGT CCTCCCCTGCTTGCTTACTAGCAAGAGTTCGGTATGTCTAGTAAATCTTATTACTGGGCTCTTGATTGCATCTACAATTA CTACTGCTGAATATGCCCCTTCTTATGTTGAATATTTCCCTTCTTATACAGGTAACTTAAAAGATATGAATGAATTTCCT GGCTGTAACTTACTTTTGATGTTTCATAAGCAATGCCGAATTTGTATTCTGATAGAAATCGGTATCATATTAGAAAGAAT CAAAGAAATAATGATAGGGATTTACCCCAATTATAATGATAGAAAACACTGTTCTAGTTGCAACCTCCTAATGCCTAAAG GTCCCCCCCCCCCCCCAACACTCTGAAAATGACTAGACACTTCTCCTGCTCACCCCCTCTTCCTATTTATACTCAATATG CCTTATCCATTAATCTAACCAATCTATTACCTTACTTTTCCTATTATACCCATGCACTTTTTTCCTTCCTGAATTCTATA TTCTCACCTCTGTTAATCATCTTATATTTGTTCATCTAATTTTGCGATGATCATAATTTTCATCCATGTGGTTACCTCTT AATTTTGATGTGCGTGTGTCTGTAATAATACACAAGAAATCACTTTCTGTGTAGTTTCCTTGCATACAATCTTATACTGT GTAAATTCCCCCCCCCCCCCCCCCAATTGCAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCC CTACAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTG GCAGCTACAATATTGCCCAGATCACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATG CACTCAATCCCTATGTCAGCCCTTGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGA TTCATTCCGCAGCATATCCTTCGCAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTG GGACCAGCAATGAAGAGGAGGGAAAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAG TGCTGGTGTCTCAACTTCAGGGGTAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGC CGCCGGTGCTCCTACACCATCTCAACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGG ACATGTTTACCATGGACTATAGATATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAA CTGGCATGTGAATAA
CDS sequence (LotjaGi2g1v0131300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTTCCGGGGTATTGTTCGTGATGTAAGGGACGGATTTGGAAGCTTATCTAGGCGGAGTTTTGAGGTAAGGCTTCC CGGCCATCACAGGGGCAAGTCAAATAGTTCGGTCTATGAGTTGAAAGAACAGCCACCAATAATACAGAACAGCAGGTGGG CTAGCCTTCCACCTGAGCTTCTTCGTGATGTTATTAATAGATTGGAAGCAAGTGAGAGCACATGGCCAGCTCGTAAGCAC GTGGTTGCCTGTGCTGCTGTGTGCAAATCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTAAGTGGGAA GATTACTTTCCCTGTTTCACTAAAGCAGCCTGGTGCTAGGGACGGACACATCCAGTGTTTCATCAAGAGAGACAAATCTA ATATGACTTATCACCTATTCCTTTGTCTTAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGG AGCAGAAGAACGACATGCACTGAGTACATTATATCCATAGATGCGGATAATATATCAAGATCTAGTAGCACATACATTGG AAAACTAAGGTCAAATTTTCTTGGCACCAAATTCATAATTTATGATACACAGCCTCCCTACAACAATGCTCAGCTGTCTC CTCCAGGCCGAAGCCGTAGATTTAATTCAAAGAAGGTTTCCCCCAAAGTGCCTAGTGGCAGCTACAATATTGCCCAGATC ACGTATGAGTTGAATGTCTTGGGTACTAGGGGCCCACGTAGGATGAACTGCACCATGCACTCAATCCCTATGTCAGCCCT TGAGCCTGGTGGCGCGGTCCCAGGGCAGCCAGAACTCCTTCCCCGCTCCCTTGAGGATTCATTCCGCAGCATATCCTTCG CAAGATCAATTGACAACGCGAGCGAGTTTAGCAGCTCTAGGTTCTCAGACATAATTGGGACCAGCAATGAAGAGGAGGGA AAAGACAGACCACTGGTTCTCAAGAACAAATCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTCAACTTCAGGGG TAGGGTGACTGTCGCCTCTGTCAAGAATTTTCAGCTGATTGCCGCGACACAGCCGGCCGCCGGTGCTCCTACACCATCTC AACCAACACTGTCTGATCATGATAAGACTATTCTTCAGTTTGGCAAAGTCGGCAAGGACATGTTTACCATGGACTATAGA TATCCCCTCTCTGCATTTCAGGCTTTCGCCATTTGCTTGACTAGCTTTGACACAAAACTGGCATGTGAATAA
Protein sequence (LotjaGi2g1v0131300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFRGIVRDVRDGFGSLSRRSFEVRLPGHHRGKSNSSVYELKEQPPIIQNSRWASLPPELLRDVINRLEASESTWPARKH VVACAAVCKSWREMCKEIVSSPELSGKITFPVSLKQPGARDGHIQCFIKRDKSNMTYHLFLCLSPALLVENGKFLLSAKR SRRTTCTEYIISIDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFNSKKVSPKVPSGSYNIAQI TYELNVLGTRGPRRMNCTMHSIPMSALEPGGAVPGQPELLPRSLEDSFRSISFARSIDNASEFSSSRFSDIIGTSNEEEG KDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPTLSDHDKTILQFGKVGKDMFTMDYR YPLSAFQAFAICLTSFDTKLACE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 423 | 423 | 1.3E-250 | – | |
| PANTHER | 1 | 423 | 423 | 1.3E-250 | – | |
| SUPERFAMILY | 45 | 96 | 52 | 1.83E-6 | ||
| Pfam | 52 | 102 | 51 | 6.5E-10 | ||
| Gene3D | 53 | 98 | 46 | 2.0E-5 | – | |
| SUPERFAMILY | 102 | 423 | 322 | 1.2E-102 | ||
| Pfam | 116 | 418 | 303 | 4.9E-100 | ||
| PRINTS | 169 | 185 | 17 | 1.2E-78 | ||
| PRINTS | 185 | 209 | 25 | 1.2E-78 | ||
| PRINTS | 234 | 261 | 28 | 1.2E-78 | ||
| PRINTS | 327 | 344 | 18 | 1.2E-78 | ||
| ProSitePatterns | 345 | 358 | 14 | - | ||
| PRINTS | 345 | 361 | 17 | 1.2E-78 | ||
| PRINTS | 380 | 399 | 20 | 1.2E-78 | ||
| PRINTS | 401 | 423 | 23 | 1.2E-78 | ||
| ProSitePatterns | 408 | 423 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0131300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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