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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0133500 |
| Transcript ID | LotjaGi2g1v0133500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar iron transporter-like protein; TAIR: AT3G43660.1 Vacuolar iron transporter (VIT) family protein; Swiss-Prot: sp|Q9M2C0|VITH4_ARATH Vacuolar iron transporter homolog 4; TrEMBL-Plants: tr|V7C1H5|V7C1H5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0133500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:48349415..48351413) extracted from Lotus japonicus Gifu genome v1.2.
GCTCACCAAAACCATTTTTATATATTGTCGTTCAGTTAACTCTTACTTAAGTTTCTTCTTCCTCTCCCACCAAATAAATC AATTCCCTTTGCCTAAGTAGTTCAATTGCGTTTGGGATTCTATGTATACTATTCTGGGATGAAGCTTTTTATCTGATCAA CAGTCTCCTCATGTGTGATTTGGAACTTTTATAAAAGAGGTGATCTTTTTTTTTATGGACAAAAGCAGTCATATTACATC CTTATGAATATTTTTCTGCCACTTGATTACAATTGTCTGTTGCTAAAGGTCTTTATCTTTAATTAAGTGGGTGTCATTGG TCTCCAAAACATACTTAACAGCATTATTTCTGTTTTCTTTTCCAACTTTCAGATGCTTTTGATTCTGAAAATTGACATCC CATTTGTTTGATATCTTTTTCCTCTGCTAAATTGCATACCCAGCCACAATTGAGAAAATGTTAGAGTATGCACATGAAGT ACAAACAAAACTATAGTAACCTCTTTTGCACACATTTCATCTTGTTCACAGACTCAGTGTTCTAATTTTACACAGGCTCA ATAATTTTCAACACACAAAGTTCAGTTGCTGTAAAAAAACTCTCAAAGCACCCTTTAGTCCGATATATCCTTTGATTACT ATTTCACAATTTGAGTGAATTTTCCTTCAGTCATTCACTTCTTTCTCATATTATTTAACAAGTTAGGAAAAATTTACACT ATTTCTAGACCCATCGGAAATTTCAAATACATGTACAACTGTGGCTGAGCATAACATAAATAATTTTTCTTTTTAAACCA CAGTCCACAGGTATCCAGCACGGAGGAAATCTCGTTTACTGTGCCGGCAAAATTTCCCAACCAAGTATTTACCTCAACTG CATTCACATTGACCCGGACCCGGTGATCAGAATATCTTTTGTATGTTAAGTAGTGGTCTTGCCCCACTTTTTCCACCAAC ATAGACCATTTTCATCCATAAATACCCCTTTCGTAGCGTGTGTCTTCCACACTTCCTCCAAACACACTCATCTTCATCTT AATACTCTTGATTATCTTTTCCTAATTAACTTCCTTTGTCTCATGGCATCCAACCCTACATCCCTCAACCAAGCCAAACA TGTCCTCCCAAACAATGACCTTGAGCAACAAGCAACAACACCTCTAGAAATCGAAACCGAGGACTTTGACTACTCAAAGA GATCTCAGTGGCTTCGCGCAGCTGTCTTGGGAGCCAACGACGGGCTGGTCTCAACAGCATCCCTGATGATGGGCGTGGGA GCGGTCAAGCAAGACATCAAGGCAATGATCTTATCCGGTTTCGCCGGGCTGGTGGCCGGCGCTTGCAGCATGGCCATAGG GGAGTTTGTGTCTGTGTACTCCCAGTTGGAGATAGAAGTTGCTCAAATCAAGAGAGAGAAAGAAAGAGGAAGCGATGGAG GCAGAGAACATCATGATCCTGAAGAGAAAGAAAGTTTGCCAAACCCTTTGCAAGCTGCAGCAGCTTCAGCTTTGGCCTTT AGTGTTGGTGCAATAGTGCCATTGCTTGCAGCCTCTTTTATAAAGGGATATAAGGTGAGGGTTGCAGTGGTTTTGGCTGC AGTGAGTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCAGTTTTGGGTAAGGCTCCAGTGTTGAGGTCTGTTTTGAGGG TCTTAATTGGAGGTTGGTTGGCTATGTGCATTACTTTTGGGCTAACCAAGTTGATTGGGTCAAGTGCACTTTAGTATTCT ATATTCCCTTTGTAAACTTTGTATTTTAAGTCATGATAATTGTGTGTTTAATTTAAAGTCTTTTGTAATTTGTATATATG CAGTGATCTCAATGTATGGTAATTCATAAGAAATGGAGTTTTTCATTTTGTTTGGTGGGTGGAGACTGGAGATAAATATA TTTGAATCATTTAAGTTGTGGTGATGGATAAAGAAATAAAAATTGTTTAAAATATGCAAATAGGGGAAAATGTAATGGC
CDS sequence (LotjaGi2g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCCAACCCTACATCCCTCAACCAAGCCAAACATGTCCTCCCAAACAATGACCTTGAGCAACAAGCAACAACACC TCTAGAAATCGAAACCGAGGACTTTGACTACTCAAAGAGATCTCAGTGGCTTCGCGCAGCTGTCTTGGGAGCCAACGACG GGCTGGTCTCAACAGCATCCCTGATGATGGGCGTGGGAGCGGTCAAGCAAGACATCAAGGCAATGATCTTATCCGGTTTC GCCGGGCTGGTGGCCGGCGCTTGCAGCATGGCCATAGGGGAGTTTGTGTCTGTGTACTCCCAGTTGGAGATAGAAGTTGC TCAAATCAAGAGAGAGAAAGAAAGAGGAAGCGATGGAGGCAGAGAACATCATGATCCTGAAGAGAAAGAAAGTTTGCCAA ACCCTTTGCAAGCTGCAGCAGCTTCAGCTTTGGCCTTTAGTGTTGGTGCAATAGTGCCATTGCTTGCAGCCTCTTTTATA AAGGGATATAAGGTGAGGGTTGCAGTGGTTTTGGCTGCAGTGAGTTTTGCTTTGGTGGTGTTTGGTTGGTTAGGGGCAGT TTTGGGTAAGGCTCCAGTGTTGAGGTCTGTTTTGAGGGTCTTAATTGGAGGTTGGTTGGCTATGTGCATTACTTTTGGGC TAACCAAGTTGATTGGGTCAAGTGCACTTTAG
Protein sequence (LotjaGi2g1v0133500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASNPTSLNQAKHVLPNNDLEQQATTPLEIETEDFDYSKRSQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILSGF AGLVAGACSMAIGEFVSVYSQLEIEVAQIKREKERGSDGGREHHDPEEKESLPNPLQAAAASALAFSVGAIVPLLAASFI KGYKVRVAVVLAAVSFALVVFGWLGAVLGKAPVLRSVLRVLIGGWLAMCITFGLTKLIGSSAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 42 | 42 | - | – | |
| PANTHER | 16 | 220 | 205 | 1.5E-101 | ||
| PANTHER | 16 | 220 | 205 | 1.5E-101 | – | |
| CDD | 42 | 192 | 151 | 2.64582E-53 | – | |
| Phobius | 43 | 62 | 20 | - | – | |
| Pfam | 44 | 116 | 73 | 1.2E-25 | ||
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 92 | 19 | - | – | |
| TMHMM | 76 | 98 | 23 | - | – | |
| Phobius | 93 | 137 | 45 | - | – | |
| MobiDBLite | 112 | 132 | 21 | - | – | |
| MobiDBLite | 112 | 131 | 20 | - | – | |
| Pfam | 122 | 215 | 94 | 1.7E-18 | ||
| Phobius | 138 | 160 | 23 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 161 | 166 | 6 | - | – | |
| TMHMM | 165 | 187 | 23 | - | – | |
| Phobius | 167 | 188 | 22 | - | – | |
| Phobius | 189 | 199 | 11 | - | – | |
| TMHMM | 197 | 219 | 23 | - | – | |
| Phobius | 200 | 219 | 20 | - | – | |
| Phobius | 220 | 223 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Manganese ion transmembrane transporter activity | Enables the transfer of manganese (Mn) ions from one side of a membrane to the other. | ||
| Biological process | Cellular manganese ion homeostasis | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. |
Expression pattern of LotjaGi2g1v0133500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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