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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0145300 |
| Transcript ID | LotjaGi2g1v0145300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chromosome transmission fidelity protein 8; TAIR: AT5G52220.1 chromosome transmission fidelity-like protein; Swiss-Prot: sp|P0CG15|CTF8_MOUSE Chromosome transmission fidelity protein 8 homolog; TrEMBL-Plants: tr|I1MPY4|I1MPY4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0145300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:52495854..52500824) extracted from Lotus japonicus Gifu genome v1.2.
AACAGACCCTCATCAAAAGCAGAAACTTGTATCTTTGAATCTTCCTTCCTAAGCAGTTGAGAGAGAGAGAGAGAGAGAGA GAGAAATGGAGATTCGTATTCGATGCAATTGCGGTGAAGGAAGCTGCGTGGAATGGGGTATTGTTGAACTTCAAGGCGTG GTCGAACCACAACCCGAATTCCAGGATTCCCTTCCCAATCTTGAGATTGGCACTCTCTGTCGCCCTTCTTCTCAGGTTCT ATACCCTCCCTAAACCCTAATTTCATTGCCTCAGATTTCGATTAATAAATGTTTTTTATCACTAATATTTCATGTATGAT TTGACAAGATTGTGCATTAGTTTTACAATGTCTTCTTTTCTTAGATTTATTGGGTTGCATAAGATCAAATGCTAGACTGT AAATAATGAGTCTTGTGTAACAAATATGAGAAATTTAGAATGAATGAGTGATGCAGCATAAGATAGAATCAAGAATAAGT GCATTTTAGTGAGGGAATTGAGTGCCACATATTGTGGAAACTTAAAAAGTAGAAACAGAATTGCTCTATAATGTGAAAGA TTCCAGCACATGGTAATAGTAATATGTGATAAAGCATTGTATTGTGGCTTACCTTTGGATCACTCGCTGCGTGCCAGAGA ACTTTTGTTCACTTTTTCTGTATGAATCACTTCGTACCTAGTAGTTGTTGTCCTCTCGTGCAAAAAATGGTCAGTAAAAT CTCAGTTGGTGGGCAACCCTTCTCGGGGAAATCCCCTGGCCCTCCTACACAGGACTGGCTCCTACCCAGGTTTGGCCCGG TAGTCTGGAGGTGCTTTCTCTCCGTTCTACCATTTTTGTAACCAAAAGAATATTAATGAATTTAAAGGTCAAGGATGTAA ATCAATTGCCCACAATCAAAATTATGTTTCATGATTGCATTACGTTCGCAATTGTACCTGTACCATTTATTCATGTGGCA TTTATCCAACAATTTAAAATTTTGGGATGATTGGTTGTTTGACATCTTGTCCCCTTTTTAGAGGGACAAATTCCGTTTGT AAAACTGTGATAGTCTCTCCTAATATACGACTTTTTTCAGAGTTTGAGCTCGTGTCCTAGGGAGGTCTTACTTTTCTTTA TACCACTAGACCAACACTTTGACCTTGATGGTTGATAACTAGATTTTGAATATAAAAAAATGTTTTATCGTAGTGTTCTT GATTATTTAAGCAAAGCTTTATCAACTGATGGTTGGTTCAAGTGATATAAACTTGATTTCCCCATAAGCCAAGTCTTAGG TTCGAGACTCGAATATTTTTTTTTTGGTTACAGTAGGAAAGAAAACAGCAAACAAAACAAAAGAAACTAGCTAAGAACGT CCTGACATAGCAGGGATATCACTGTTGGTGGTGGTTGAGACCAGAGCTTCCAATCCCAATTCTCATTAACAGCGAGCTTG GCGAGGGCATCAGCAACTTGGTTCCGTTCCCGGGGTACATAATTAACAGACACTCTCCATTCCTTGTTAAGCAATGCTCG AATAGCAATAATCTCATCTTTGTGCCAATAAGTGTCCACGTCCTTATTGCTTGTAATGATTTCCTGAGCTTCCAGGCAAT CTGTGTAGCAAGTAACAGATTTAATTCCCATCTCCCAAACATGCATCAGACCCTTCTTCATTGCCAAGAGTTCCGACTTG AGAGCATCACCGCCACCTAAACTTGCTGCGAAACCACAAAATTTGATTGTCTCTTGTGGAGGACTCGTCTTAGATAAAAA AAAATGCAAAATTTTAAGTATTACAAAGATATAGTTGCCACTTTCCAAATTTAATGAAGTTAAACCTTCAACTTAATTAA ATGGTTGGTTAAGATAACTCAATTTTTAAAACGTTGATCAGGTAGGAGATTCATTTTCTTAACTTACTTTTTGTTAAACT AATAGTTCCTGTGCATGCTTTTGTTGTTCAGGAAGTCTACACTTTAACTATTGGGTACCATGAACTGGCAGGGTCAAAGG TTCCCTTGAAGAAGCCGTTGGTGGTGCTCAAGAAAGTGAAGCATCCGGAAGGAGAAAGTGGCGGTCATGTGGAGCTGCAA GTTGTTGGAATCATTCGACATCGGATTCTCTTCAAAACAAGACCAAAGGCCATCATTTCTAGTAAGTTCTAGCCGCTCTT TCATTTCACCAAACCCCTGTTTCAATGTGCTTTTCGTTTTGTAGAGAACAGTTGGTAAGCAACATAGCACTCTTTTTTAA ATTTGTCAACATATCTATCTTTTTTGGGTGTCCCATATTATTTTATCATAGATGTTCTTAGGAACAATTAGGTATAATAC AATATCACTCAAGTGTGTCAATATAGGTTGAGTAGGTTTATAATTATCTGTCACTTTAATACTTATTTAACCCTTGATAT AAAATGAAAAGTGGGAGGCAATGGTCACCCACATAATGGGTATCACACAAATTTGATGGTATTATTTAAAAGAGTGTTAT CTTTGCACACCTAGGAATTTCTTCCGTTGGTTTAGGGTTCAAGAGAAATGTTATTCCTACATCTGAGTCTTAGACCTTTT GCTACTTTTACCACTTTTGAAAAGAGAAAGGGAGGGGATGGATGGGACTGTTTTAGAATTTTCTTTTCAATAATATGAGT GAAGGAAAGATTGGTAGGTTTAAGTCTTTAAGTCATTGAACAAATTCAGGAACCAATTCATTAATAAGTTGATGTTCCCT CTCTTCAAAGTTAGTATAAAACGTACCACCAAACTTGTTAGATCAACTGACACGGGTTATTCTAGTTTAAGTGGAGATCT CGGGTTCGAATCCCTCTGATTGCCTCAGTGGAAGATTGTTTTAAAGAAAAAAGTTGGTATAAATGTTATCTTCTAGTTTT TTATTATCACTTCATTAAAAGATCATGATTTAACTATTTAAAATGTGAAACTTTCTTAGTAATGTGTTACCAAATGATGG CATGGAAGTGCACAAATATTTAGTTGAATATTAAACTCATGGTAGATCTGATTTGTATCACTGTTGTTCTTCCCCATCAT CAACACCTGGTGGTTTCAATTTAGTTTAGTAAGATGTGGTCTAAACTAAATATAATTGGATTCCGTCCCTTTGGCCCTCT TTCCCTGTGTCCTTATGTCAATGAAAAAAAGATTCTGCTACTGCATTCTGTTCCTATCTTAGGGTGGGTCTCACATTGTT TTTGCTGTACAGCTTATATTCCAACTACAAGTGCAGTTCCTATCATTTGCGTTCCTGCTTCCATCTACTTGGAAACCTCA CCCTTTCTCCTCCTTATCCTCTTAAAAAGTGTTTGCATCCTTTGCATGTACATAGTGGGTTTTCTCTCTACTTCAAAAAA CTCTCAAAGTGTCTCTTTACATGTTTGTTTATTAGTACTTGTACTAGTTTTTAAATTAGATGCTTAATCTTCGGAGCCTT GTCATCTAGTATCCCAATTTTCAATATAACTAAGTGGGGGTGTGGGGCATAAAACTCTGAAGTTTTCATCACGAAAGATC ACATTTTTCCAATTAACTATAGAAAGCAACAAACCTAATCCATGTTTTGTTTTATCTAACCGGTAAAGTAATAATAAGAT GCCCCATTCAAATATCTAAAGTCCAATCTCAGTAGCATTCTATTTCTTTCTTATAACGTTGCTAAATTATTGCTTCATGT CTAGAATTTAGCTGTACTTGATTAGAAGATTGTTTTGTTCACTCTAAAACATTGTCCCATACGCAATAGCTTACACCTCA CCACACAGGTGGAGAAAGAAGAAATTAGCAGATTCTTGGAGTAAAGCGATTGATGCTTCTGACATTTCTTTCAAGTTTCA AGCCCTTTTAGCTAACACATACTTCCATTATCTCTTTTATCAGTTACTTTACTCTATTTTGTTTCATACGCTAGAACAAG CATTTCTTAATTATTTTACAAGAATTGGAAACATGCTACTAATTAGTTGCCATCTATCTTGCTGCATAATGCTGGGATCA GTTTAACACACAAGTGTGTGGCCTGGATGTGATGAGAAGGATCGACATTCATGAATAATTAACATAGGGACAGAAACCCT CTGTCCTCGTTGGTGTCCATTTCCCTGTCCCACGAATCACATTGTACCACGTTAAAAAAAAATACATGACTTCGCCATTT ACATGCTTACATGAGCAGTTTTTAAATGATATGATACAGTGTGATTGGTGGGACAAGAAAGGGAACACAATCGCGGACAG AGGATCTTAATTCTTAACATAGATGGTCTAGATGCTTTGATTGTTTGCAAACAAAACAATAGTTTTGTCCATTACACTTT TGTGTTTGTCACCATTTGCCATGCCTTATATTCATTTTATGAAATTGGAGGCTAATACTAATGTTATCTTTCGATGTTTC CCCTTGCTTTTCTAGGGCCACAGATAACATCCAGGGAAAAACAAACACCTATCATCTTAGGTTCATCACCTTCAAATCAG GCTGCTTGAAATTCATTGTCATTGTCATTCAATGAGAAAATCAAGTTCGACCAGAAAGCTGGGGAAGTTGGAGGAGGGAC ACATAATCCCCTTTTCATGCTTTCAGACAAAAATTAGACAATGTCCATGTGTCATTCATCCATATATGTAATCTTAGCAA CCCCATGATTTGTGATAATGGCAAAAGTAGCTGTGATTCATCAATACAAGACGTTTGATGGGTCATTATCTTAATCTTTG TTTTGGTGTAAATAAATATGCAAATAACATCTATTTACCTTAAGCTTATCAGAATTTCTTTTGGTCTCGAATAAGGAAAA TTATGTGGGAATCAGCATGCTGAAACACTTTGCTATTCTTGTGCTTGATTCTCCTTATTAGTGGGGTTGAATTTCTTGTT AATGATTACAAAAATATTCGTGTACATAGAATAAATAAATAATTTAACATAATATTTATCAGTGTACCACAAATTTTTTA GAAGACAGTTG
CDS sequence (LotjaGi2g1v0145300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATTCGTATTCGATGCAATTGCGGTGAAGGAAGCTGCGTGGAATGGGGTATTGTTGAACTTCAAGGCGTGGTCGA ACCACAACCCGAATTCCAGGATTCCCTTCCCAATCTTGAGATTGGCACTCTCTGTCGCCCTTCTTCTCAGGAAGTCTACA CTTTAACTATTGGGTACCATGAACTGGCAGGGTCAAAGGTTCCCTTGAAGAAGCCGTTGGTGGTGCTCAAGAAAGTGAAG CATCCGGAAGGAGAAAGTGGCGGTCATGTGGAGCTGCAAGTTGTTGGAATCATTCGACATCGGATTCTCTTCAAAACAAG ACCAAAGGCCATCATTTCTAGGCCACAGATAACATCCAGGGAAAAACAAACACCTATCATCTTAGGTTCATCACCTTCAA ATCAGGCTGCTTGA
Protein sequence (LotjaGi2g1v0145300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIRIRCNCGEGSCVEWGIVELQGVVEPQPEFQDSLPNLEIGTLCRPSSQEVYTLTIGYHELAGSKVPLKKPLVVLKKVK HPEGESGGHVELQVVGIIRHRILFKTRPKAIISRPQITSREKQTPIILGSSPSNQAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 126 | 126 | 1.6E-57 | – | |
| Pfam | 47 | 109 | 63 | 5.7E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitotic sister chromatid cohesion | The cell cycle process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle. This cohesion cycle is critical for high fidelity chromosome transmission. | ||
| Cellular component | Ctf18 RFC-like complex | A heptameric complex related to replication factor C, which loads the DNA polymerase processivity factor proliferating cell nuclear antigen (PCNA) onto DNA and plays a vital role in chromosome cohesion. In Saccharomyces the subunits are known as Ctf18p, Rfc2p, Rfc3p, Rfc4p, Rfc5p, Dcc1p, and Ctf8p. |
Expression pattern of LotjaGi2g1v0145300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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