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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0149900 |
| Transcript ID | LotjaGi2g1v0149900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Post-GPI attachment to proteins factor 3; TAIR: AT1G16560.1 Per1-like family protein; Swiss-Prot: sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3; TrEMBL-Plants: tr|A0A072UAB4|A0A072UAB4_MEDTR Post-GPI attachment-like factor-protein; Found in the gene: LotjaGi2g1v0149900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:54018560..54023458) extracted from Lotus japonicus Gifu genome v1.2.
ACATCACAAACGTGGTTATTTATTAATGATAAGTGATAACTTGATGATGATAAAATAATAATGTTGTGTGTCTGAGATAT CATTTCCTCCCGAGATTCTGGCCCTGTTTTTCCCACTCCCATCCCAACTCGCTCCGAGTTGACTCACTCCCTTGTCCCTT TCGAGATCAATCACCACCACCACTGCCACCGTGCTCCGCCGCTAATGTAACCCGACCTCGCCGTCAATGCGAAACTCACC GTCGATTCTCGCTGGAACCTCCTCTCTCTTCTCATCCTCCTTCCCCTTTGACTTCGCTTTCGCGTGAATTCGATGGCTCC CTTTCGCTCTCTCCTGCTTCTCGCTGCACTCTGCTCCCTCCTCCGCCCTCTCACCGCCAGCGACGGCGACGCCGATCCGC TTTACAAGTAAATCCTCTCACTCTCTCTCTCTCTCTTTTAGATTTTGCTCAGAATATTTACTCTAAGCGATTGATAAGAT TTTGGGACTTGAAAGAAAACTGGGGTTGGTGTTTTATTACTAATATGGGTACCTTAAAAATTTGAACTTGGAAATTGGAA TGATCTCTCTTTTTATTTTTGCTTCATAAATATTTTAGGATGAGGTTGTGGTGTGGACTCAGGAATTCTTAAGACGATTT TATTTGCATATATTATGATGTGATTGGTTTTTGGTGGACTTCTAGGATTATCAGTGCCTGCATATAGGTGTAATGATTGA ATAATGATGTGGATTTCATTTATGTTTTTTGAACCCTGACCCTTCACCTGTAAATCCCTTCGTCAGGGTTGTTAGTTGTT AATTATTTATGTATTCATTTATTTTGTTTGATGTCTATTGTCAAGCTTGGAGTTTGAGTGAGTGTGAGATTTGATTTTTT TTTTTTAAGAGTTTTATCTTCTGTAGTGATGAGCTTTTACATTTTTTCATGGAGTTGTTGACTTTCGTAATTGCTTTGGA TGATTTCTGGAAGTTCCACTGCTTGTTAACATAGAGAGATACCTGATTTTTGTTTGGAATTGAATGCCTTCTTGCTTCCA GATATGTTTACTGAGTACCTGTAGATATCATAATCAGAAGTTTTTTTGCGTTGACTTTAGTTTGTAAAGTTGAAATATAG TGCTAGAATTTGTATACTTTAGTACACAGTATGGATCTCTGCAATTGAGATATTCAAGAAAACAGTTAGGAATATTTTTC ATAAATATTTAGTTATTTAGTTACTATTGTCTAGCTATGTGGCGTGAAAATTTATTGGCATGTTTTTGTTTCTAACTTTA CCAAGCATCATGTGTCTTTATTTTGTGGAACTATTTAGTTTATTTAACAAATAGTGTGAACGATTTAATATTAGGGCATT CTTATTTTTACCAAGACAACCATGAAGAACTTGCTTCAGTAAAAATTTCTTCATAACGTATGTTGCAACACTACTTAGGT CTTGATTGATAAAATCCAATACCGCCCTAGGTTTAATACAGTCGTCCAAATCAACTTTCATATTCAAATTGGTTTCATAT TTTTCTTACTATATAAGCTTAAAGCTCTTGTTCCAATATTTTGATGATTTGAACTAAGTACATTGAAAATAGTTATCCAG CTTGTGATTACATGAATTGGCCAACTATCTGCTATATTGAAACCCAGCAATTTGAAAAGAACGCCCAATTAAATTTAGTT CATGAACATTTTACTCTATCACAATACAATCAGTAAAGTGAACCTCTCAAAAAATTAGATGTCTTACCTTTTAGATGTTT TTCTTAACTGCAATGGCATTCCTAGTTGGACTCTTGAATGAATTCATGAGCTGTGGTGGTATCACCACAACCATTCCTAT ATAATAATTGTAGGCATATCTAGTTCTTTTCTATGGAGAGTATATTTTTACGTCACAGCTTCATTTGTCTCAACAAAAAA AAGGAACAAATTTGATATCACGGGAATAGATAGGCAGATATTTATAGTTATGAAGGCTGACCTTTTCTGTTACTGGTAAA ATCCAAATCCCTGCTACAAAAATAATAATAATAATAATTAATAATAATAATATGAGTTCAGTGAGGTTTCGTGGAAGCTT TACTATCATTTGTATTGCTTAGATCTATATAAGCATTATTTTTTGTTAGAAGCCTGGCATGGGTTTTGTCATCATTTGTA TCTTGCACAAGTCCCAGACTTAGGAGTTCATAAAGTGTGGAGTTTGGTTATGCAATATAATATTGAAACTTAAATAAATT TTCCGTATCATTTGCTTTATCTAACATATCCAGAAGAAAGTGTCAGTTCCCTGCTCTACACAATAGTGAGTGTGCTCTTT TAACTTCTCCCTTTCCTTGGTATGGAGATAGTGTGGCATTTCATATCTGACTATCAGTTGCCATCAAATGCAGCATCAAT TATGACTTTTCCTCGAAACTTTTAAATAATGTTCTGTTATTCTTTTGACTAATTCTACAGGGTTTGCCTATCGTTCATAC TGCATGTTTTCAGTTTAATCTATTCCTGTATTTATGCTTTCATGAAGGAGTTGGAACTTGGAACTTTTGTACCTTACGAG TCTCACTCCACAGAAGAAATTGTAGTTTGTTGATGGGCATTTTTAATTTTATTAAAAAGGTGAAACTTTAACTATTGCCA GTTGTCAGATGTAAGTAAATGAGGAACCGAATAGCAGATGCGAAAAATATACATGTTTTTCCGATTAATCCAGCATTGAA CTGTTAGCGGACAAAGTAGCTGTAAAATTATTATTTATGACTCAATTCTTGCCGTATGATCAATTTGGTGTTGACTATTA AATTTCAGAGCTTGTGTGGAACAGTGCGAGAAAACTGGATGTGTAGGGGATAGATGCTTTCAACATTGTAAATTCTCATC TGATGGAAAACCAGTTGATGGTCCATGGTATATGCATGAACCCCTCTACTTGAGGTGGAAACAATGGGACTGTCGCACTG ATTGTCGGTATCACTGCATGCTAGTAAGAGAAGAAGAAAGAACAAAACTTGGTGACAAGCCTGTCAAGTATCATGGAAAA TGGCCATTCCGGCGTGTATATGGCATTCAGGTTTTTTTCATGAATCTCCTATGAAAGGTTTAATGTTCATCATGCTAAGT TGGTTTTGGTTTTTGATTGTAGCATCGATATGTTGTATATTGTTTCAGGAACCTGTGGCTGTTGCTTTGTCTGCCCTTAA TCTAGCCATGCAGTTTCATGGCTGGGTATCCTTTTTCATTCTTGTGTACTACAAGTTGCCTTTGATGCCTGATAAGAAGA CTTACTATGAGTACACTGGCCTGTGGCATATCTATGGGATTCTATCTATGAATTCATGGTTGTGGAGTTCTGTTTTTCAC AGTAGGTAAGTTGTTCACTTTATGATTTCCTTGTATGTTATGGGCTGTATATATAAAATTATGATTCAGTATTGAAGTAC TAATCCTCAAACCTGGTGCCTTATTGATTTCCCGGAACTTTGTGTTAATTGTATTTTGAGTTTGTCATAAAGCTCATTTA TACTCGCTCACACGGCATCACAAAGGCTTATTAAATATTAAATAAGATTTAACCATTTGTGCTTTCAGTTTTGATGTATT TCAAACCCTATTATCTGTAGAGCTGTGGAATTGACAGAGAAGTTGAATTATTCTTCTGCTGTGGGCTTACTTGGATTCAC CCTCATTCTAGCAATACTGCGAGCTTTTAATGTTAGGGATGAGGCTACAAGAGTCATGGTTTCTGCTCCCTTGGTTGCTT TTGTGACAACTCATATAATGTATCTGAATTTCTACGACCTTAATTATGGTAATCTTTTAAATTTAAATGGTTGTCATTTG TGCTTTCTATTGAATCACACATGTTATTTTTTTTCGTTTCCTACTGGAGTTATGGTTTATGCTGAAAATGATGGAAGATA AATTCCTTTTGAGATTAATTTATAGAATTGATTCTCCTCAGAGTTATAGAATTGATTCTCCCCAGAAACTACTCACATAA GCTTCTCCCATGAACTGATTCTGACTTTATCTAAACATGCACTTATTAAAGTATGGTCTACCGAAATCATGCTGCACTGT TCTTCAGAATGAGCTGATGCATTGACTATTTTTCCAGGTTTGAACATGAAAGTTTGCATGTCAATGACTGTCGTTCAGCT TCTTATTTGGGCAATTTGGGCTGGTGTTTCGAGTCATCCGGCACGGTGGAAATTATGGACTGTGGTGGTGGGACAAGCCC TAGCTATGGTCATGGAGACATATGATTTCCCACCTTACATGGGATATGTGGATGCTCATGCTGTTTGGAATGCTTGTTGC ATTCCTCTTACATTCCTTTGGTGGAGTTATATCAGGGATGATGCTGAGTTCAGAACCTCTGCTCTCCTTAAGAAGGTGAA ATAGTGTTGTTGACTTCATGGACAAAAGGTGGATCATAAGAAAGAAATACCATATGCTTTTACTTTGATTTGTACATCAG AACTCTTTCATTTTCCTCGTGCTGGCATTTATTTGAAATGCTTAACACGATGGTTTCTGTGTTTTTGGTTCTGTAACTCT TGTTTTCCTCATGTATGAGGCATACTTTCTTAGTGAAATTTAAATTTGCAGTGTCTTCCTTGCCTTTTCATATCCCATTC CCTGTCCCTTTCTTAAAAGAATAAAATTTGCACCAACTTTAGTAAAATGAATGACATTAATCCTTCGTTTGGAAGGAAGG AAAGATGACGGAAAGAATGGTACATGACTGCATGAGGGAAAACACAATTATCAAGATCCCTCCCTTTGTTTGGTATCAAT CAACAGTCCTTCCATATCTAGAAAGAAACGATGAAGGAGAGTGTATTTTTTGTTATTTTGACTAAAATACCCTTAATCTT ACCTCTTATGATAATAACA
CDS sequence (LotjaGi2g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCCTTTCGCTCTCTCCTGCTTCTCGCTGCACTCTGCTCCCTCCTCCGCCCTCTCACCGCCAGCGACGGCGACGC CGATCCGCTTTACAAAGCTTGTGTGGAACAGTGCGAGAAAACTGGATGTGTAGGGGATAGATGCTTTCAACATTGTAAAT TCTCATCTGATGGAAAACCAGTTGATGGTCCATGGTATATGCATGAACCCCTCTACTTGAGGTGGAAACAATGGGACTGT CGCACTGATTGTCGGTATCACTGCATGCTAGTAAGAGAAGAAGAAAGAACAAAACTTGGTGACAAGCCTGTCAAGTATCA TGGAAAATGGCCATTCCGGCGTGTATATGGCATTCAGGAACCTGTGGCTGTTGCTTTGTCTGCCCTTAATCTAGCCATGC AGTTTCATGGCTGGGTATCCTTTTTCATTCTTGTGTACTACAAGTTGCCTTTGATGCCTGATAAGAAGACTTACTATGAG TACACTGGCCTGTGGCATATCTATGGGATTCTATCTATGAATTCATGGTTGTGGAGTTCTGTTTTTCACAGTAGAGCTGT GGAATTGACAGAGAAGTTGAATTATTCTTCTGCTGTGGGCTTACTTGGATTCACCCTCATTCTAGCAATACTGCGAGCTT TTAATGTTAGGGATGAGGCTACAAGAGTCATGGTTTCTGCTCCCTTGGTTGCTTTTGTGACAACTCATATAATGTATCTG AATTTCTACGACCTTAATTATGGTTTGAACATGAAAGTTTGCATGTCAATGACTGTCGTTCAGCTTCTTATTTGGGCAAT TTGGGCTGGTGTTTCGAGTCATCCGGCACGGTGGAAATTATGGACTGTGGTGGTGGGACAAGCCCTAGCTATGGTCATGG AGACATATGATTTCCCACCTTACATGGGATATGTGGATGCTCATGCTGTTTGGAATGCTTGTTGCATTCCTCTTACATTC CTTTGGTGGAGTTATATCAGGGATGATGCTGAGTTCAGAACCTCTGCTCTCCTTAAGAAGGTGAAATAG
Protein sequence (LotjaGi2g1v0149900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPFRSLLLLAALCSLLRPLTASDGDADPLYKACVEQCEKTGCVGDRCFQHCKFSSDGKPVDGPWYMHEPLYLRWKQWDC RTDCRYHCMLVREEERTKLGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLAMQFHGWVSFFILVYYKLPLMPDKKTYYE YTGLWHIYGILSMNSWLWSSVFHSRAVELTEKLNYSSAVGLLGFTLILAILRAFNVRDEATRVMVSAPLVAFVTTHIMYL NFYDLNYGLNMKVCMSMTVVQLLIWAIWAGVSSHPARWKLWTVVVGQALAMVMETYDFPPYMGYVDAHAVWNACCIPLTF LWWSYIRDDAEFRTSALLKKVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 6 | 342 | 337 | 1.3E-199 | ||
| PANTHER | 6 | 342 | 337 | 1.3E-199 | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 121 | 99 | - | – | |
| Pfam | 70 | 330 | 261 | 1.2E-78 | ||
| Phobius | 122 | 146 | 25 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 147 | 157 | 11 | - | – | |
| Phobius | 158 | 178 | 21 | - | – | |
| TMHMM | 164 | 182 | 19 | - | – | |
| Phobius | 179 | 192 | 14 | - | – | |
| Phobius | 193 | 211 | 19 | - | – | |
| TMHMM | 194 | 216 | 23 | - | – | |
| Phobius | 212 | 222 | 11 | - | – | |
| TMHMM | 220 | 242 | 23 | - | – | |
| Phobius | 223 | 243 | 21 | - | – | |
| Phobius | 244 | 248 | 5 | - | – | |
| TMHMM | 249 | 271 | 23 | - | – | |
| Phobius | 249 | 271 | 23 | - | – | |
| Phobius | 272 | 277 | 6 | - | – | |
| Phobius | 278 | 296 | 19 | - | – | |
| Phobius | 297 | 307 | 11 | - | – | |
| TMHMM | 307 | 326 | 20 | - | – | |
| Phobius | 308 | 326 | 19 | - | – | |
| Phobius | 327 | 342 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | GPI anchor biosynthetic process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. |
Expression pattern of LotjaGi2g1v0149900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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