Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0153100 |
| Transcript ID | LotjaGi2g1v0153100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI0|BH120_ARATH Transcription factor bHLH120; TrEMBL-Plants: tr|A0A0S3TB41|A0A0S3TB41_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0153100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55050463..55052160) extracted from Lotus japonicus Gifu genome v1.2.
CACACTATGTGATGAATCCCTTAATTTTTAGTTCCCCACCAAATTGACAACCTCAGAATATCATCACATCTTGTATGATC CTCTTATGCTGTGATAATATTCCTTGTATTAGTCAAATTGGAAAGGGCAAGTAGAAAGAGCTGCAGGCACATGCTTATTT GGGAGAAAAAGATTATAAATAAAAAGATTGCAATGGATGATGAAAACAAGAAGTGGATTCACAGGGAGACAGAGAAACAA AGAAGGCAAGAAATGGGTAAACTCTGCACCACCCTTAGATCGCTTCTCCCTTTAGAATATATTAAGGTAAGCACCTATGG ACAAGGTTTTCTCTTCATTTTCAGGGTATTACTTTCATTTATTATGTCCTCTAGAATAATTTTGAAACCAAGTTAATTGA GGGGTGATTTTAAGGTATACCACTGGTAACTCAATTATAAACATAAGATCTGTAAGCATGTGAAATAAAATTAGTAACTT GAAAAAATAGTTGTAAAATAGTTTCTTGAAAATTAGCTATCACATAGCTGCGATTTGCTACTCTCACAGCAATTTGGCAG CAGTGTTACATCCACCACTCGAACAGGTGGTGGACACTAGACAGCCCCGTGATTTTAATGGATATCTTGGTGATCATCAT CAGGGAAAGCGCTCAACTTCTGATCACGTGAATGAGGCTATCAATTACATCAATCACTTGCAAAACAAGGTGAAGCAGTT ACAGTATAAGAGGGATAAGTTAATGAAGGAGGTACCTAATTTGCACACTACTACTGGCCCTGAAAATGAATGCTCACCCA CCCATCTTCAGCCATTTGTTATCGTTCATCCTTTCCCTGGAGGAGTTGAGATTGTGTGCAGTTACAGCTTAAAGTGTGTG TTCCCTTTGTCAAGAGTGCTAGACATTTTGCTTAAGGAAGGGCTTGATGTGGTAAGCAGCACTTCCACCAAAATAGATGA GAGATTCATACACACTATTATATCAGAGGTAAACATGTCAATTTAATCGTCTATCATCATGCATTAATATATAGGGACAT TCTACCATACACTAACAACCGATACACTGTTTAGTTTGTAACTTATTGAGTTTTGTTGATAACTATAAGTAATAGATATT GTAATTTGTCAAATAGTTTGTAAACTTAAATGTAAAATACAAAACTTATTGCATGTAGTTACAATCAAACTCTACAAATT ACATGCACTGTACGGCAACACCAGCTATTTGGTGTCTTACCTTAGATAAAGTCATTATATTAACCATCATCGTTTCTAAA ACTGATTATTAATATTCGTTTGTATAACATTTCTTGAAGGATCCAAGTCATCTAAATATACTTGATACTGATTACTCTGA TCAACTTCAAAGAAAGCTGACCGAGGCAATATCATCTACAGGTAATAATTAATACTCTTCTGTATAGAACTTTGTATGCT TTACAAAAGATTTTTCGCATGATTTTTTTTCTCTAAATATTCATATTTACTGCATGTATTACAAATTAATCATTTGCAGG AGTGGGAGAGACTTTGCCTGAACCTCAAATTTGCTAATATCTTTGAGAAAATGTGTTAGTTGGAATTTTCTGATTGCACA TACTGTTAACTCGAGTGATTTGTACAAAAGTGAGCATGTTACATTTCTGCCACCAAGAACTAGTGCAATCCTAGTCTAGA GTACTGGAGCTAATTCAA
CDS sequence (LotjaGi2g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTATTTGGGAGAAAAAGATTATAAATAAAAAGATTGCAATGGATGATGAAAACAAGAAGTGGATTCACAGGGAGAC AGAGAAACAAAGAAGGCAAGAAATGGGTAAACTCTGCACCACCCTTAGATCGCTTCTCCCTTTAGAATATATTAAGGGAA AGCGCTCAACTTCTGATCACGTGAATGAGGCTATCAATTACATCAATCACTTGCAAAACAAGGTGAAGCAGTTACAGTAT AAGAGGGATAAGTTAATGAAGGAGGTACCTAATTTGCACACTACTACTGGCCCTGAAAATGAATGCTCACCCACCCATCT TCAGCCATTTGTTATCGTTCATCCTTTCCCTGGAGGAGTTGAGATTGTGTGCAGTTACAGCTTAAAGTGTGTGTTCCCTT TGTCAAGAGTGCTAGACATTTTGCTTAAGGAAGGGCTTGATGTGGATCCAAGTCATCTAAATATACTTGATACTGATTAC TCTGATCAACTTCAAAGAAAGCTGACCGAGGCAATATCATCTACAGGAGTGGGAGAGACTTTGCCTGAACCTCAAATTTG CTAA
Protein sequence (LotjaGi2g1v0153100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLIWEKKIINKKIAMDDENKKWIHRETEKQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAINYINHLQNKVKQLQY KRDKLMKEVPNLHTTTGPENECSPTHLQPFVIVHPFPGGVEIVCSYSLKCVFPLSRVLDILLKEGLDVDPSHLNILDTDY SDQLQRKLTEAISSTGVGETLPEPQIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 148 | 147 | 1.0E-78 | – | |
| PANTHER | 2 | 148 | 147 | 1.0E-78 | ||
| Gene3D | 16 | 97 | 82 | 5.3E-12 | ||
| CDD | 17 | 76 | 60 | 1.99636E-12 | ||
| SUPERFAMILY | 18 | 94 | 77 | 3.01E-16 | ||
| ProSiteProfiles | 19 | 71 | 53 | 13.668 | ||
| Pfam | 23 | 72 | 50 | 6.0E-10 | ||
| SMART | 25 | 77 | 53 | 6.4E-5 | ||
| Coils | 61 | 88 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0153100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…