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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0153700 |
| Transcript ID | LotjaGi2g1v0153700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36; TrEMBL-Plants: tr|I1MQ59|I1MQ59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0153700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55107719..55110463) extracted from Lotus japonicus Gifu genome v1.2.
TACTTAAAAAAATATGAATGGACTACCAAGTGTAAGTTTGGATACACGGTAAAAAATCACGGTGAACAGAAGTAACTTCT TTTATATATATAGCTATATGTAAAAAATTTCAAACATGAGTAGCATTTTTTTTAACAAGATAGCAAGAATCTTTGGCAGG TGAAATCCTTGGTTAGCTAGCTACAAATAGCTTAGCTATCAAAATGAAGTATCATTTAGAGTGGTCATTGAACTGAGCAA ACCATGTTTCCTTTACAACGAGGCAATGAGCTGGTAATCAAGTTTTCTAGCAGCCCCCACCAACAGCAACACAAAATCCC CGAAGATCTGATTCTTGATGAAATGATCACTAGCAGCCAGCCAAGGGAACAATTTTTTAGGGCTGAGATGTCTAAAGATC ATCATAAGAGCAAGAAGATTATGGTCCACAGGGAGATTGAGAGGAAAAGGAGGCAAGATATGGCTTCCTTTTATGCATCT CTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGTGAGAAATCTACAAACCTTCAATAAGACTTTTTTTTCCAATAAACT CCTTGAATCCACCCTATTATCTCAATTGATGGATACCCTTTTGAATTGCTACTCCTTTCAGTATCAGTTTCAGTGTTTCC CTATGAGAATCTAGATGGGGATGCCCTAAATACATGTTTTTTGTGATTAATGAATCTCTCTCTTTACATACAGTTTCACT ACCGATGTTTTTCATGTGTTTCACACTCATTTTCTCTCCTATCTCATTTTAACAATTTCTTTTCTTATCTCTCTTTTCAT TAATTTTCTATCACATCACTCATTATATTTCTAGTTTTTTTCTCTCATATGTTCTTATCTCTATGTGTGTGGGTGGGTTT AATTGGGACTTGGGGGATTCTAAATGGTTTTCTTCCTTTTAATTTGATTTTATGTGATATATATGTTGTCCTATAAGATT TCTGGGCTGCTTAATTAGGTTGTTAATTTTGATGGGTATTTAGGGAAAGCGTTCACTATCTGAACACATAAATGAGGCAG CGAATTACATAAAACACATGCAAAATAATCTCAAGGAACTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCCACAAT TTCATGCTTGAAAACCATGAGAGCAATAACACTACTAACAACTTCACTGTCCATGAGAATAATGGTATTCTGGGAATAGA AATTACCAGTGATTTCAAGGAGGAAAGTCTCAAACTTTCAAAATTGCTACATTTACTTCATGAAGAAGGACATGATGTTG TTAATTGGTTTTCAACCGAATTGGATGGCAGATTGGTTTACAGTGTCCAGTGTAAGGTAAGGATATTTTCATCTTTTTTC TTAGGGCTATTCTACAGTGCTCCATGATAATAAAAAATTCAACCCATGAATCATGTTTTCACGTGTTATTTACAATATGT CCTTTAGGTGCTAAAGTTAATTTGCAGACAGGGTTTTTTAACTTGTCAACCAGATTTTTATTTGCCAATGGTATATTGTT TTTTTTTTTTAATCTGTATAGTAATTAAAATTTACTCTAATATTGTTACGTTGTATATTTCCTAATTATTGAACTTCATT CACAGGTTAACAATTCAAACAGTTTAGATCTATCTGAGCTGAAAAGGAAAGTTGCCAATGCAATTCCAACATTTATATGT TCTGATTAACTTTGTGATTGTTGGAGCAAGGTAGGCTCATCAAAATCTAGCCAATGACAGGAACATTAGAGTTTAGACCT TTCTAACTGGTGGTGGTGACAATTTGTTTAGATGAGTTTGGCTTGCAATTTTTTCATTGACCTTTCTTCTGCTTTGCTTG TGGTCAAAGAAGGAACAAAAAAGAAAGATTGTGTAGATCAAATTTTTCATTTCTCTCCTATCCTTTCACAGCTTTTCCGC GTGCGATCAAGTGGATTCAGTTTGTGTCTTTGCTTTTCCAAATTGCAGATGTTATTAATTGTTTCATTGCAAGCTCTATT CTCACTGTCTGTGTAATTGAATGTAAAATTGTATGGAATTATCCACCTGAGTTGTATGTATTTGAGATTTCTTGGATAAC TAATCATGAAGATTTGAATTTTCACCCTTTGTTCTACTTGAGTGCTATAAAGTTTAACAGTGTGGGAGAGCGTCAGAGCA TGTGAGGGAGGAGGTGAGGGAGGAGATGAGGGTGGGAAGAAGAAGAAGAAGGATGAAGAAGATGGAGATGGAGAGAGGGT GATGGTGGTGGGGAGAGGTAGAGGAAGATGGTGGAGAGAAAGAAATTTTTCAGATTCAGGGACTAAATTGAAACTTTTAA AACTTTCCCAAGAGTCAAATGTCACACAAGCTTCAACTTTGACCAAAAAAAAAATTCAAGTCACACTTCCGTTAACGGCG TCAGCTGTTTTTAACCTAGAGACGGCTGATGAAGGAGATTTGCACATTCAGGGACCACAGACGTCATTTTCAAAGTTTAG GGACGAAGTTGAAGGCAGCGTACGCTTTCAGGGACCAAATTAGCTATTTACCCGATATTTTTTTATAAGTTTATTAGATG TATACATTGAGACGAGAGTTGCTGACAAAACATTGATGAAAGAATAGATAAATTTAGAATATTTTTTTTGAAATGATAAA TTTAGAATTTTAAAAGAACAGGAAATTATTTTTAACATAAATTATTATCTAAATGTATTTCGAATACTCATTGATCATAA GTTTTTTTTATTTGGTTTCGACCCT
CDS sequence (LotjaGi2g1v0153700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCCTTTACAACGAGGCAATGAGCTGGTAATCAAGTTTTCTAGCAGCCCCCACCAACAGCAACACAAAATCCCCGA AGATCTGATTCTTGATGAAATGATCACTAGCAGCCAGCCAAGGGAACAATTTTTTAGGGCTGAGATGTCTAAAGATCATC ATAAGAGCAAGAAGATTATGGTCCACAGGGAGATTGAGAGGAAAAGGAGGCAAGATATGGCTTCCTTTTATGCATCTCTT AGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCACTATCTGAACACATAAATGAGGCAGCGAATTACATAAA ACACATGCAAAATAATCTCAAGGAACTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCCACAATTTCATGCTTGAAA ACCATGAGAGCAATAACACTACTAACAACTTCACTGTCCATGAGAATAATGGTATTCTGGGAATAGAAATTACCAGTGAT TTCAAGGAGGAAAGTCTCAAACTTTCAAAATTGCTACATTTACTTCATGAAGAAGGACATGATGTTGTTAATTGGTTTTC AACCGAATTGGATGGCAGATTGGTTTACAGTGTCCAGTGTAAGGTTAACAATTCAAACAGTTTAGATCTATCTGAGCTGA AAAGGAAAGTTGCCAATGCAATTCCAACATTTATATGTTCTGATTAA
Protein sequence (LotjaGi2g1v0153700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPLQRGNELVIKFSSSPHQQQHKIPEDLILDEMITSSQPREQFFRAEMSKDHHKSKKIMVHREIERKRRQDMASFYASL RSLLPLEFIKGKRSLSEHINEAANYIKHMQNNLKELGAKRDELKKLSHNFMLENHESNNTTNNFTVHENNGILGIEITSD FKEESLKLSKLLHLLHEEGHDVVNWFSTELDGRLVYSVQCKVNNSNSLDLSELKRKVANAIPTFICSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 228 | 221 | 2.0E-87 | – | |
| PANTHER | 8 | 228 | 221 | 2.0E-87 | ||
| Gene3D | 47 | 141 | 95 | 3.6E-10 | ||
| CDD | 55 | 114 | 60 | 2.46691E-9 | ||
| SUPERFAMILY | 55 | 126 | 72 | 3.93E-13 | ||
| ProSiteProfiles | 57 | 109 | 53 | 12.703 | ||
| Pfam | 61 | 110 | 50 | 3.3E-10 | ||
| SMART | 63 | 115 | 53 | 5.9E-5 | ||
| Coils | 99 | 126 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0153700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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