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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0154300 |
| Transcript ID | LotjaGi2g1v0154300.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich receptor-kinase-like protein; TAIR: AT4G05200.2 cysteine-rich RLK (RECEPTOR-like protein kinase) 25; Swiss-Prot: sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25; TrEMBL-Plants: tr|A0A072U9Q5|A0A072U9Q5_MEDTR Cysteine-rich receptor-kinase-like protein; Found in the gene: LotjaGi2g1v0154300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55183305..55186469) extracted from Lotus japonicus Gifu genome v1.2.
CTAATCTCGTTCTCCCTTCTATCCTATATATCCATCCACAAGGTCCACGGCAATAACACATCCATATGCCTTCCTATAAC ATTCTATTCTTCATCCTCATTAGTTTTATGAGTTTTCCACCTACCAAAACAGAGGACAGTATTGCTATTTATCTACACAA AATCTGCTCCAACACCACCACAATCTCCAACAACAGCAGCTCCTTCCAATTTGATCTGAGAACCCTCCTCAATTCACTGT CCTCTAAAGCCACCGGTGACACCCAATTCTCCAATGCCTCAGTCATTGGCAGCACAGACCCATCTGACTCCGTCTATGGA CTCTTCATGTGCAGGGGTGACATCCCCTCTAAACTCTGTCAAAATTGCATCAGAGACGCAACCCTGCAACTCTTCTCAGA GTGCTCCTCATCCAAACAAGCATTGATTTGGTATGAGGAGTGCATGGTTCGCTTCTCCGATCGCAATTTCTTCTCGGCTG TGGAAACACAGCCGAGAATTAGCTTCTCAAACAGCCTTAACGTCTCAAACTCAGAAAGCTTCATGCATTTGGTGTTTGAG ACCATGAATGCAACTGCAGATGCAGCGGCAGGTGGTGATGAGAAGAAGAAGTTTGCCACGAGGGAAGAAGTAACTGTTTC GGAAAATCAGACTCTTTACTGTCTAGCTCAGTGTACGCCGGACTTGTCGCCGCGTGATTGCAGAACATGTCTCAGTAGGG CAATAGGGGAATTTGCTAAGTGCTGTGGAGGAAAGCAGGGAGGGAGAGTTATGTATCCTAGCTGCAATGTGAGGTTTGAA TTGAACAAATTTTACAGGGATATTGGTGACAAAGCACAGAGTGCTTCTCCATTATCAGGATCTCCAGGTAAGTCTTGACT CTACTCAAGTATATATACCCTTTAACAGTTTATAGAATTTTACTAGTGAAAGTGATAAAAGTTAAAAGAAGTCCTAGATG AAAATGTAGGTTCTTGTGGAATTGGAACATCAATTGAATAACGGTTAAGATATGAAACAATTTCTACCATTATAGGTCTA TCATTAGGGTTATGTTGAACACATAATAAGCCAATCTGAATGCATTTGATGACTTCAATTTCAGAACAACTTTCTTTGAT ATGTTGGTCTACTACACTTAAAAGTGTTTGATCCTTCCATTGTCTCCAAACCTGTAATAATATATCAAGTAAAATATTAA AATTATTACATTTCTTTCCATTTGTGACTTAATCTAAGTGTACAATAATTATATCACCCAAAAGAAATAATGCTAGGAAA CTATTGATAAATCAGTATACTCACATAACTCAAGAGACCATTACCAACACGTTCTGATTCATAAGAATTTTGATTCCTTT TCCCGGTAACAATCTCTAAAATCATGACACCAAAACTGAAAATATCTGATTTCTCTGAAAAGTGCCCAAACATTGCATAT TCTGGAGACATATAACCACTGTAAAACATAAGAAAAATCAAATGTAAGATGATTTATTTAAATAACCTTATGAAGAAGTT AGAAAAGAAAAGATAGAAATGACGTCTAAAACTTACAATGTTCCAACAATTCTATTTGTACTTCCTTGGTATTGATTTAT TTCAACAATTCTAGCTAAGCCAAAATCTGAAATTTTTGGAATCATATTTTCATCTAATAAAACATTACTAGGTTTGAGAT CACGATGTATGACTTTAAGCCGTGAATGCTCATGTAAATAAATGATTCCTCGAGCTATCCCTCCAATAATATTGTAACGT TCATCCCAGCTTAATGGACTTTGCCCTTGAGAACCTACAAAATCATTTTAGCAAAAAAATGTTTTCCAATAAGTCAACTC AAGTTCTATGAAAAGCATATATAAAGTACGCATACCTTTAAAATCTACTATGTAAAATGTTTAAGGTGAAACGTGTCAAA CCGAATAAAAAGTAATCAAGGCTCTTGTTTAGCACATATTCATAAATGAGTATTTTCTCTTGTTCCTCAAGACAAAAGCC TATGAATGCCACCAAATTTCTATGTTGAAGCTTCGCTATCAATAAAACTTCGTTCTTGAACTCATCGACACCTTGCTTCG AACTTTCTGAAAGTCTCTTTACTGCTATTTGTTGTCCATCAAGAAGAGTACCCTAAAAATATATAAAAAAAATTATTTGT GACAAATGAAGTATGGAAATGAATTTTATCACATTTTCTCACCTTATAAACCTCTCCAAATCCACCTTTGCCAATGTAAT TGTCATGAGAAAAGTTGTTGGTTGCTGCTTCAATTACGGCAAAATCGAATTGCAATGGCTCTAAAGTTGCACTTTCATTA CCAACTGAACCAAAATTGAATTGTACTTCTTGCACACTAGGATGGATCCAATTCCAAAAGAATCAAGTTCTACTCCATCA GTGAATAATTCTATCAATGAAGTGTCTATAAGTACTTTTCTTCCCCGATAATAATTAGTTAATTATCCTTTGAAGTTTCG TTGTTGGGAGCAAGTGGTATGTATAACTCAATGGATTAAGGAAAAGACTAGTTGTAATTTTTAGTTTATATGAGGTTAGT TTGAAAGGAATACTTAAAGATCTTTATTGAGGACTATTCAATCCCACTCGATATATAATGAAGTGGAAACTCTTCTAATC AAGTTCTTTAACTTTCTTCATTTTAAAATTTGTGTGTGAGATCTATTAAGAAACTGAAGTTTTCTTTATATACTAAGTTC TACTATGCTGATGATATATTGAAGAAATTCAGGAGGAACCGACAGGAGGAACCGAGGAAATATTTAAAGCCAGTTTTCAC TCTAGTAGAAGAAACATTGAAGCTGATAAGAAAAAAATGACATCCTACGTACTAATGTTTGATTTGAAACCTAGATATTT GGTGGCTATAGCTTCATCTGAAGAAGCCAAGATTCTGAAGAACCCAACCTTCTGAAGAAATCAGAGTTTAAGAAAGCTAC GCAGAAGAATCCAAATCCTGAGTAAATTGCATGCTCAAAGCAATCAGACACTGAAGACATTACATGCATGCTGAAGTAGT TAACCAAGCATAAATATCATATTTGCACTTTCTGTAACTTTTCTTCTTCTCATTCTCCACAAACTTCTCATATCTAAATA TCATCTAACTCTCATTTTCAATCGAAATAAAGAATTTCGTATATA
CDS sequence (LotjaGi2g1v0154300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCCTATAACATTCTATTCTTCATCCTCATTAGTTTTATGAGTTTTCCACCTACCAAAACAGAGGACAGTATTGC TATTTATCTACACAAAATCTGCTCCAACACCACCACAATCTCCAACAACAGCAGCTCCTTCCAATTTGATCTGAGAACCC TCCTCAATTCACTGTCCTCTAAAGCCACCGGTGACACCCAATTCTCCAATGCCTCAGTCATTGGCAGCACAGACCCATCT GACTCCGTCTATGGACTCTTCATGTGCAGGGGTGACATCCCCTCTAAACTCTGTCAAAATTGCATCAGAGACGCAACCCT GCAACTCTTCTCAGAGTGCTCCTCATCCAAACAAGCATTGATTTGGTATGAGGAGTGCATGGTTCGCTTCTCCGATCGCA ATTTCTTCTCGGCTGTGGAAACACAGCCGAGAATTAGCTTCTCAAACAGCCTTAACGTCTCAAACTCAGAAAGCTTCATG CATTTGGTGTTTGAGACCATGAATGCAACTGCAGATGCAGCGGCAGGTGGTGATGAGAAGAAGAAGTTTGCCACGAGGGA AGAAGTAACTGTTTCGGAAAATCAGACTCTTTACTGTCTAGCTCAGTGTACGCCGGACTTGTCGCCGCGTGATTGCAGAA CATGTCTCAGTAGGGCAATAGGGGAATTTGCTAAGTGCTGTGGAGGAAAGCAGGGAGGGAGAGTTATGTATCCTAGCTGC AATGTGAGGTTTGAATTGAACAAATTTTACAGGGATATTGGTGACAAAGCACAGAGTGCTTCTCCATTATCAGGATCTCC AGAAATTCAGGAGGAACCGACAGGAGGAACCGAGGAAATATTTAAAGCCAGTTTTCACTCTAGTAGAAGAAACATTGAAG CTGATAAGAAAAAAATGACATCCTACGTACTAATGTTTGATTTGAAACCTAGATATTTGGTGGCTATAGCTTCATCTGAA GAAGCCAAGATTCTGAAGAACCCAACCTTCTGA
Protein sequence (LotjaGi2g1v0154300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSYNILFFILISFMSFPPTKTEDSIAIYLHKICSNTTTISNNSSSFQFDLRTLLNSLSSKATGDTQFSNASVIGSTDPS DSVYGLFMCRGDIPSKLCQNCIRDATLQLFSECSSSKQALIWYEECMVRFSDRNFFSAVETQPRISFSNSLNVSNSESFM HLVFETMNATADAAAGGDEKKKFATREEVTVSENQTLYCLAQCTPDLSPRDCRTCLSRAIGEFAKCCGGKQGGRVMYPSC NVRFELNKFYRDIGDKAQSASPLSGSPEIQEEPTGGTEEIFKASFHSSRRNIEADKKKMTSYVLMFDLKPRYLVAIASSE EAKILKNPTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 14 | 273 | 260 | 1.4E-85 | – | |
| PANTHER | 14 | 273 | 260 | 1.4E-85 | – | |
| Phobius | 18 | 22 | 5 | - | – | |
| Phobius | 23 | 330 | 308 | - | – | |
| Gene3D | 27 | 135 | 109 | 1.5E-24 | ||
| ProSiteProfiles | 28 | 135 | 108 | 19.856 | ||
| Pfam | 34 | 132 | 99 | 6.4E-19 | ||
| ProSiteProfiles | 141 | 249 | 109 | 20.535 | ||
| Gene3D | 141 | 249 | 109 | 2.9E-24 | ||
| Pfam | 154 | 245 | 92 | 4.4E-14 | ||
| MobiDBLite | 257 | 276 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0154300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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