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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0155600 |
| Transcript ID | LotjaGi2g1v0155600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing family protein; TAIR: AT2G36360.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q7M3S9|RNGB_DICDI RING finger protein B; TrEMBL-Plants: tr|A0A0B2P063|A0A0B2P063_GLYSO RING finger protein B; Found in the gene: LotjaGi2g1v0155600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55447058..55452861) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTACTGGGTTAGAGCAACATCTTCTGATTTCGCCGGAACTCTTCCCCAACCTCGGAGTGGTCATTCCGCTGTTAA CATCGGCAAATCCAAGGTTGTCGTGTTTGGTGGCCTTGTCGATAAGAAGTTTCTCAGCGACATCGTTGTCTATGATATTG GTAACAGTCACACCCCTCTTCTCAAAATTTGATTTTTTTTGGTGGGCAAGCATTTGATTCATTTTCATCACCTGTTTTTG TTTCAGAGGCCAAGCTATGGTTTCAGCCAGAGTGCACAGGAAGTGGTGGTTCAGATGGCCATGTGGGTCCCACCCCACGG GCATTCCATGTTGCTGTTGCCATTGATTGTCACATGTTCATTTTTGGTGGCCGTTATGGGAGCCAAAGGTGATTGCATCA CTTCATTTTTCTGCATATTGGTGTTTTTGTTTCTCTTGTAATGGGTTTCTATGATGAATATTGTGTAATTGAACTTATAC AATCACATGTGTCAAGATTAGATTTAAGTCAAATAATCTCAACTTGATAATCCATGTATGATTGATTATATGGTTAAGAA TTAAGATTAATGGTTATCACCTTTCGTGCTCTCGCTAGACGTGTAAAATGTTTGTTTATTTGCTTCTCATCATGATGGCT GAATTTTACAGGTTGGGGGACTTTTGGGTTTTGGATACTGGTATGGCATTTCGTATTAATATTTGTTGAGTTCATGTTCT GTGAAGACTTTGATGTTGTGAGACTTTGACATGTATGTTACGGGACTAATGCTTTGTTGGCATGTTGGCATTTCGAACAA ATGATGGTGTTCAAGATATATGGCAATGGTCTGAATTGACCAGCTTTGGTGACTTGCCTTCACCAAGGGATTTTGCTGCA GCTTCAGCAATTGGAAACCGGAAAATTGTTATGTGAGACTTATAGCGTTTCATTTGACTTTTTATCCTAATTGGCTGTAT TAGGATCAAATTATAATATGTTATAAGGTGGGTTTTTTATGATGCAGGTTTGGTGGATGGGATGGAAAAAAGTGGTTATC TGATGTTTATGTCATGGACACAAGTATTTTCTTCTGGGACTAAATTTTATCTCCGAATATGTGATTTCCTTTTATTCCTT TGAAACAAGTTGTAACATCATCTTCTTACTCCCATAGTATCCCTCGAGTGGATGGAGCTTTCAGTCTCAGGAACATTGCC ACAGCCTAGATGTGGGCATACTGCCACAATGGTTGAAAAACGGTTGCTTGTATATGGTGGAAGAGGTGAAGCACCATAGT TCTCCTCATTTAAGAATTGATCTGCTTGGATGTTGATTTTCTTTAATGAATTTGTATTAGTCCTTTTGTCCAAATAAACA AAATACACTCAACTGTTTCTTGGCAATTTCATCATTTGTTGAGAATATTTTATTTTGTAATGTAATCATTTCTTTGTTTT GTTCCTCATTTTTTGTTTCTATTTATATGTTCTGAATGTTCATGTTAAAGGAGCATGTCTTAATTTCTCAAATAATAATT GATTTTTGGCAATCATGTTCATGTGCATTCCATCACTTCCAGAACTATAGTTACACTTTTTAAGAGCAAGATTTGGCACT TCTCCTTTGCTTTAACTTTAGGTACAAGATTGATGAAATTTCAGATTTGCTTGATGGTTAGGAAGTTATATTTTAGGTAT GAATTTTCCGTGATGAAATTTATAAATTCAATTTGCAAGTGTTAAAATTTTTTCTATATTCAAACTTCAAAGATACTCCA CTCCTCACTGCTGACATTTAAAAAACTATTTGAAACTTCCTAGCTCATTTTAAGGTTTAGTCCTCTTTCCCCCAACATGT GTGTTATGCAAAACTCAAGTTCTGAATCAACATTTTTTGTTTGAGATAGTCTCTCTGAGGTTTTGATAACAATTGATTGT GTCCTGCTCTGGAATAGTCCCCCGGCCCAAATAATCACATTGCTTTGATTTCTCTGACTTACATGTAAATAAGTAACTTT TATGAGATAATGGAGGGAGTATATATATTAATTGCTGCAGTGTCAATCTCATTAGAAGTTATCAGCTGAAATCAGTGCTA TACCCTGACTTAACAGGAGGAGGTGGACCAATTATGGGCGATTTATGGGCATTGAAGGGCCTTATTGAAGAAGGTGTGTA TTGTTTGCCATCTTTATAGGTCTATCATGTACACTGCTGTTTATTTAGTTGCAGGCTGCAAGTATTAATTGTCGTGTCGT GTTCCTTTGCTTTAAATCATAGGATTAGCTCAGTTGTATTTTCGTTCTCTCCTCTTTAATACGACTTTTTAATCTAAGCT CAAAAAAATGGTGGCTTCTTATTCAATTGGCTTATTTACTTATAGTTTGTATTTTGTTGTGGAGGGAAGAGAATGAAGCA CCTGGGTGGACTCAATTAAAGCTTCCAGGTCAAGCTCCTTCCCCCCGCTGTGGCCATACAGTTACATCTGCAGGACCCTA TGTAATCACATTTTCACAATCCTTACTTCTCTTTCTAGCTTTGTTACTTTGTAGATTGCTTTTAGCCTTTTGTTTTCATA TAATGATTTACATTGAAATGTGCTATGTCATTATTCTTTTTTTAAGATAGGTTGGGTATTTAAAAGATTTTCTATTCTGT GCATGTTAAGCATGTGTTGGTATTTGGACAAACTATGTGTGGGTTGAGATTAAGAACGGTCATTTGATCAGTTGTGACTT GTGAGGTTGGTTTAGGATTTGTTACTGGTGCAACCAAAAAACTAATACTAATCCCACAAAAGGGGGGCATGGATCTTAGG CTATCAAAAACCTCAGGGTCTTAAAAAATTGTTAATCCTGCTATTTGGTTGTACAAATTTATTACTTTAACTGAAATGTT GTCATTTATTTTTTCTTTTATTTCTATTGGATGGGATTTTGCAGTTGTTGATGTTTGGAGGGCATGGGACAGGTGGATGG TTGAGTCGTTATGATATCTATTATAATGATTGCATTATATTGGACAGAGGTAAGAACTTTCACTCTACCTATCTGGAATG ATGGTGAGTGTATTCATCACAATTGTTAAGAACCAGTATAATTATAGTGCTATGTTTATCTATTCCCTTTAGAGTTGACT TGTTAATGACTTCTGTCCTCTGGCATCATAGCACATACATTTCTTGCACACATGACATAGATTGCGGCTCTGCTAATGTT TTGAGAAAAGAAAATTGATAATGCACGTTAGTTGCATAAAGGCAGTTTTTTTGCTGTTTTCTTCTTCCTAAAACTGGAAG TTCAAAGATTTTGGTTTCAGGATCCTTGTTCTCTTTGGTGTTATTCTGTAGTAGAGGTACCCAAGGAGGGCTTCATTTTT CATTGTTAAAATCTCACATGGACTAGAGGCATGGCCAAAATAGCCCCTTATAAAGGCTCTGGCATTCCCCACTTTACAAG CTAGCTTTTGGGGTCGAATAAGTCGGAGCTCAAATCTAAGATAGTTTTAGAGCCTATCTTAGATATGATATCGGACCCGA TATTTCACACTTTCATTGCGGATCCTTAGCTGCCCTCTAACATTTCTGCCTTCATCGAGGGCCCTTAGTCGCTCGCCTTT ATTGCATTCGTCAGTTTTACAAACTTCACACTCCAGATATCCCATCCTAGGCGTGAAGAGTGTGTTAAGGTCCAATATTG ACTAGAGATATAGCCAAAATAACTCTCCTATAAAGGCTATTGCAATCCAACCCATAAGCTAGTTTTTGAGGTTGAGTCAG GCTGAGCCCCAATTCTAATATATTTATTTATCTAGTTATTCTATTTTTAAAGATTGTTTGGCAAACATTAAAATTAAAAT TGGTCCAAAAGAACAAATATCTGGCTTTCATCTCGTAAATTTTGCATCCTAAATTTTATACGATATCTTTTTTTCTTATT TTTACTTTTAACGGGTTGGGATAACTTTTTGTTCTTCTGTTGCATATAGTTTCAGCACAGTGGAAACGGCTATCCATAGG GAATGAACCTCCTCCTGCTCGAGCATACCACTCGCTGACGATGATTGGTTCACGGTATTTGCTAATTGGTGGCTTTGATG GGAAATCAACTTATGGTGATTCATGGTGGTTAGTCCCTCAAGGTATTCATTGTTCTTCTGTGATAATGTGTTGTCAATTT TTTTTATTTTGTATATTCTCATTTTTCACTCCAGTTATTTTCACTGATAAACTGTGCAAATGAGGCTAATTAACTGTTTT GTTTGGCAAGGACTTCTTCTTCCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTCTGTTTCGCCATATCTTCTCTG CCAGTATTGTTTTTGGGTTGACTGGAGGGAATATTATAGTCTGGGAACTTTCCAATTTGTCTTGTGCTTTAATTTAAATG TTCAATTCCAAATCTTTTCAATAAATATTGTTTTGCAATGGGGAATATTATCAATAAGCACTAAATAACTAAATACCTTT CAAACTTATATGGGAAGTGTTAAAAGAACTTAACAGTCAGAGGCTCAAAAAGACATCCTATAGTCCTCTCATTTCCTTTG CTTGTTTTGCAGAGGACCCAATTGCAAATAGGTTAACTGCATCTCCACCAAGAAATATTCTTGAAATTAAGGATGCTACA TCACTTAATGATGATTTTCAACCTCAAATGAAGGTATTAATTAAACTTGTTTTGACAGCACCCATCTCTTTCTTGTCTTA AGTTTTAACACTTAGATTTAATATAGAACAAGGAAGAAAATTTTAAAACTGTTCTTTGATGCTTAGCCCACGTTATACTT AGAGTCTTAGACGCATCATTTTGACAGTCCTTGATTTCATTTGTGTATTTTAAGAAAAATTTGAGCACATCATATGCCAT ATTGTCCTTTAATAGATTCATCTTTATATCTTCGATTAATTTACTGCTGACACCTTCATCAGGATAACCAAACAGAGAAA TTTCATTTCTCAGAATTGCAAAGAAGATTGCAAATATCAGTTTCACCATCCAATTCCAGGCTTCCAATTGTGAATGAGTT GGACGATAAAGAGCTTCTTGAATTAGCATCGAGATTGGCAGGTGACGAAGTTTCAGCAAATTCCCTGGTAAATTAAAACA TTACTATACTTGTGAAACTTTTCTATATGTCTGTATCATAGAAGTTGTTTTAATTGAAATAGTTTATCATTTCCCAATAA GAAGGCAATTGAAGGACTTCGTGAACACTGGAAGAAGACTGAATCTAATATGGTTAAACTCAAAGAGCTTGGACCTTTGC TTCGGGATTACCAACGTCTAATTCACCGGCACCATATGTAAGAACTACATTTTTATCCATTTCTTTCTTTACTGTTTTTC CCTATAATGTTGCCAAGGCTTGTAAAGTTTGTTTCATAATTGCTACACTTGATATCCTCATATTGTCATATTGAAGTTTT GCATTTATGTTTGTGGAATTTGGAGATCTTAGCAGAAAGAGATGACTTTTTATTAATAGGAAGGAATTGAAAGAAGTTAA AAACTAGGAATTTTTTATGCAAAAGAAAGCTTACTAGACAGGAGAAGAAGCTTTATAAAATTTTCAGTTAGTGAATATTT CTTTTGCTTTTCGAACTTGACATAAGAATAGTTTGGCTTATGTTGCTTTTCTTCTTTTCCCATCTAACTATATTAGAGAA AGAAGTGCCTCTGACCAGCAACCTGGATTTGGTGAACATGTGATGCATCAATTTTACCATGTCAAAAGTGTTTCTCAGGT ATACTTTTGTTTTCTTCAGACATAGATATTTTTTTCCATTTTAA
CDS sequence (LotjaGi2g1v0155600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTACTGGGTTAGAGCAACATCTTCTGATTTCGCCGGAACTCTTCCCCAACCTCGGAGTGGTCATTCCGCTGTTAA CATCGGCAAATCCAAGGTTGTCGTGTTTGGTGGCCTTGTCGATAAGAAGTTTCTCAGCGACATCGTTGTCTATGATATTG GTAACAAGCTATGGTTTCAGCCAGAGTGCACAGGAAGTGGTGGTTCAGATGGCCATGTGGGTCCCACCCCACGGGCATTC CATGTTGCTGTTGCCATTGATTGTCACATGTTCATTTTTGGTGGCCGTTATGGGAGCCAAAGGTTGGGGGACTTTTGGGT TTTGGATACTGATATATGGCAATGGTCTGAATTGACCAGCTTTGGTGACTTGCCTTCACCAAGGGATTTTGCTGCAGCTT CAGCAATTGGAAACCGGAAAATTGTTATGTTTGGTGGATGGGATGGAAAAAAGTGGTTATCTGATGTTTATGTCATGGAC ACAATATCCCTCGAGTGGATGGAGCTTTCAGTCTCAGGAACATTGCCACAGCCTAGATGTGGGCATACTGCCACAATGGT TGAAAAACGGTTGCTTGTATATGGTGGAAGAGGAGGAGGTGGACCAATTATGGGCGATTTATGGGCATTGAAGGGCCTTA TTGAAGAAGAGAATGAAGCACCTGGGTGGACTCAATTAAAGCTTCCAGGTCAAGCTCCTTCCCCCCGCTGTGGCCATACA GTTACATCTGCAGGACCCTATTTGTTGATGTTTGGAGGGCATGGGACAGGTGGATGGTTGAGTCGTTATGATATCTATTA TAATGATTGCATTATATTGGACAGAGTTTCAGCACAGTGGAAACGGCTATCCATAGGGAATGAACCTCCTCCTGCTCGAG CATACCACTCGCTGACGATGATTGGTTCACGGTATTTGCTAATTGGTGGCTTTGATGGGAAATCAACTTATGGTGATTCA TGGTGGTTAGTCCCTCAAGAGGACCCAATTGCAAATAGGTTAACTGCATCTCCACCAAGAAATATTCTTGAAATTAAGGA TGCTACATCACTTAATGATGATTTTCAACCTCAAATGAAGGATAACCAAACAGAGAAATTTCATTTCTCAGAATTGCAAA GAAGATTGCAAATATCAGTTTCACCATCCAATTCCAGGCTTCCAATTGTGAATGAGTTGGACGATAAAGAGCTTCTTGAA TTAGCATCGAGATTGGCAGGTGACGAAGTTTCAGCAAATTCCCTGGCAATTGAAGGACTTCGTGAACACTGGAAGAAGAC TGAATCTAATATGGTTAAACTCAAAGAGCTTGGACCTTTGCTTCGGGATTACCAACGTCTAATTCACCGGCACCATATAG AAAGAAGTGCCTCTGACCAGCAACCTGGATTTGGTGAACATGTGATGCATCAATTTTACCATGTCAAAAGTGTTTCTCAG GTATACTTTTGTTTTCTTCAGACATAG
Protein sequence (LotjaGi2g1v0155600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHYWVRATSSDFAGTLPQPRSGHSAVNIGKSKVVVFGGLVDKKFLSDIVVYDIGNKLWFQPECTGSGGSDGHVGPTPRAF HVAVAIDCHMFIFGGRYGSQRLGDFWVLDTDIWQWSELTSFGDLPSPRDFAAASAIGNRKIVMFGGWDGKKWLSDVYVMD TISLEWMELSVSGTLPQPRCGHTATMVEKRLLVYGGRGGGGPIMGDLWALKGLIEEENEAPGWTQLKLPGQAPSPRCGHT VTSAGPYLLMFGGHGTGGWLSRYDIYYNDCIILDRVSAQWKRLSIGNEPPPARAYHSLTMIGSRYLLIGGFDGKSTYGDS WWLVPQEDPIANRLTASPPRNILEIKDATSLNDDFQPQMKDNQTEKFHFSELQRRLQISVSPSNSRLPIVNELDDKELLE LASRLAGDEVSANSLAIEGLREHWKKTESNMVKLKELGPLLRDYQRLIHRHHIERSASDQQPGFGEHVMHQFYHVKSVSQ VYFCFLQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 481 | 481 | 5.2E-250 | – | |
| PANTHER | 1 | 481 | 481 | 5.2E-250 | – | |
| Gene3D | 3 | 214 | 212 | 4.3E-34 | ||
| SUPERFAMILY | 14 | 61 | 48 | 1.44E-8 | ||
| Pfam | 19 | 58 | 40 | 5.0E-9 | – | |
| SUPERFAMILY | 75 | 328 | 254 | 1.96E-50 | ||
| Pfam | 89 | 136 | 48 | 1.9E-10 | – | |
| SMART | 89 | 138 | 50 | 0.74 | ||
| Pfam | 139 | 185 | 47 | 3.6E-8 | – | |
| SMART | 140 | 189 | 50 | 0.14 | ||
| Pfam | 189 | 243 | 55 | 8.4E-6 | – | |
| Gene3D | 215 | 342 | 128 | 5.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0155600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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