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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0156800 |
| Transcript ID | LotjaGi2g1v0156800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT5G03760.1 Nucleotide-diphospho-sugar transferases superfamily protein; Swiss-Prot: sp|Q9LZR3|CSLA9_ARATH Glucomannan 4-beta-mannosyltransferase 9; TrEMBL-Plants: tr|I1NHP1|I1NHP1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0156800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:55604269..55608265) extracted from Lotus japonicus Gifu genome v1.2.
GGCATTGCAAGCCAAATGGGTTTCATTTGGCAGCAAGCCAGGGCACCCTTGATTGTTCCAGTGCTGAAATTGCTAGTAAT TTTGTGCCTAGCCATGTCACTTATGTTATTTGTTGAGAAAGTTTATATGGGAATAGTCATACTCTTTGTGAAGGTGTTCA GGAACAAGCCAGAGAAGCATTACAAATGGGAACCACTCAGGGATGACATTGAGCTTGGAAACTCTGCATACCCCATGGTT CTGGTGCAAATCCCAATGTACAATGAGAAAGAGGTATCACTATAAAGTTAATGTTGTGATATGTATTGTTCCTGAAATAG AACTAAACATATTTTGCTCGAGTTAAAATGTTTTATTTAGTGGATACTGACACTGTTCCATTGCTTGCAGGTGTATCAAT TATCAATTGGTGCTGCATGTGGGTTATCATGGCCATCTGATAGAATTATTATTCAAGTTCTTGATGATTCAACAGACCCA ATCATTAAGGTTGAAGTCATCCCCTACTAATAATAACTGACCATTTGTTCATTTATCTTGCATAATTAAACAATGTTAAA TGTTTATTTTCCCTTACATAATCCAATTTTGGGCTCGAAAATAATTTGTACAGTCTAGGTGATACTTAAAAATAACTTCA CTCATCTAGGTAAACTTGCATGGAAGCATTTCCTTCTACAAACAGCACTTAGCAACAAAGTTACTTTCTCAAGAAATCCC TGGCTTAAACCCATAACAAAAGAACACATCATGGTTCTGAGCATTTAACTGGTAAAGAAAAATGGTGACTATCAACCTTT GATCTTTTCAGTAAAAGAAGAAAAAAAAGATTTTTGGGTCATTCATCCCAACTAAAATCCATGTAGAAACTGACCCAATC AATATATCCATATAGTCCGAGTTTTGGATTTGGGTCTATGTAGTCAGGGCAATCATAAATTCATGCATTCAAGTAATTTA AGTTGTTCAATCAGATCAGACGATTAATAGATTAATAGGTTTTGCCTATATAAGGCAACTTAGATAAATCATATACTCAA AATGTAAGCCATCATGTTTTGATTGAATGACTCAAATTCCTTGACTTTGTGGATTTAAGATTTCCCTTGCCACAAAGAAT CCAAACTCCCTAGTTTTGTGACCTGAGTTTTTTGCACACTAAACCATGCATTTTTGTTTCCTTTTATCAAAACACTACAG AATATGGTGGAGGTGGAATGTCAGAGATGGGCCAGCAAAGGCCTAAACATAAAGTATGAGATCAGGGAGAACAGAAATGG GTACAAAGCTGGGGCTCTCAAAGCAGGCATGAAGCACAGCTATGTCAAACTATGTGACTATGTGGCCATCTTTGATGCTG ATTTCCAACCTGAGCCTAACTTCCTTTGGCGTACTATCCCTTTCCTCGCTCACAACCCACAAGTTGGGCTTGTCCAAGCT CGATGGAAATTCGGTACTGTTTTGCTCATCAATGTTAAACTTTCATGAAACCTGTGTGTTCTCCAAAGGATCTGGACTCA AAATATAGTTGTTCAGTTAAAATACTCATTTGATTATCATTTTACATTGCATAAGTTAAAGTGATCTAGAGTCAGTGCCT TGTAGCACAAAAGTTAATTATAGCATGTTTGGGACAACTTATTTTACTTCAGATTCAATTCTGGCACCAGAAGGTATTCA AAGAAGCTTCTCCCCAGAATTGATTTTGGCTTTCAAGTCAATTGTAGAAGAATTTTAAAAAAAATGCACTTAGACTCGTA CAGATCAACAGTTAGAAAAAGAACTGATACCAATGTCTTACCAACAAAAATCTAGTAAAAGAAATCATTTCCACTTCATG TGACATAAATTTGTTACAGAGTAGAATGTAGATGCATTTGGAAAGGTGTGAAAGTAATATTCCTTGTGCATTGCAGTTAA TGCTGATGAATGCTTAATGACAAGAATGCAAGAGATGTCACTGGACTATCATTTCCTGGTGGAGCAGGAAGTTGGATCCT GCACCTATGCCTTCTTTGGTTTCAATGGTAAATCATTTCCCTATTACTGCTTGAAAAGTTTAGGAGAAAGTAATCTGTAG ACACACACACACACACACACACATATATATATATTGGTAAAACCAGTTGTGTGAAAGTGGATAATGTGGCACAGGCACAG CTGGTGTTTGGAGAATTTCAGCACTAAATGAAGCTGGTGGATGGAAAGACCGTACAACAGTTGAAGACATGGACCTGGCT GTCCGAGCTGGTCTCAAAGGATGGAAATTTGTGTATCTTAGTGACCTCAAGGTATCATCAAATCACAACACTCATTTAAA CTCATGGCTTCAAGATTATTTTTGTTAGGATCTTGAAGGCATAGCTGGTCAGAGTCATATTCAAACACAATTAAGTCCTC TTATCATGTATAGCCTGGCTTATGTAGGGCATGTCTCCTTTTTTACAAGGGATAAACCTCATTTGAATACTTTATGCTTG ATCCTCTCCCACTTAAAACTTAAGCAAGGCAGATCACTCATAGCATGCTTGGATCAGCTTTTATTTCCTCATAATCAATT CTCGCAATCAGAAGTTACTCACATAAACTTCTCGTCAGAATTGCCTTTAGAATCAATTGTAGAATTATTTCCAAATATGC ACTGACAATTTATCTAAATAAATTTAGGTGAAAAATGAATTACCAAGCACCTTCAAAGCCTACCGCTATCAGCAGCACCG GTGGTCATGTGGCCCGGCTAATCTTTTCAAGAAAGTGGCGATGGAAATCATAAGGAACAAGGTATTAGTTTCCTTGTAAT TTCTTAATCTCCCATGTCTAAAATTTGTCTTAAGAAGTTATCATCACCCATCTTCTCCTTTAATTCCTTTTTTACCATAC CTTGCAGAAAGTCTCCATGTTGAAGAAATTCTATGTGATTTACAGTTTTTTCTTTGTCCGGAAGATCATAGCCCATGTGG TCACATTTGTATTCTACTGTGTCATTTTACCAGCAACTGTTCTAGTTCCAGAAGTGGAAGTTCCCAAATGGGGTTCTGTC TATATCCCTTCTATCATTACACTCCTTAATGCTGTTGGAACTCCAAGGTAAGCATCTTAATAGCATGTTTGGGTAAACTT TTCTTTCCCCATAATCAAATCTGAAACTCAGAAGCTACTCGGAGAAGCTTCTCCCCATAATCAGTTCTAACTTTAAAATA AATTGTACAAGGATTCCCAAACATGCAATAGGTTTGCAGCAAAGTTTTTCTATTTCAAGTAACTTTCTGCAAACATTTTG TGCAGGTCACTCCACTTGTTGATATTCTGGATACCATTTGAAAACGTTATGTCAATGCATAGAACCAAGGCAACACTAAT AGGTTTGCTAGAAGCAGGGAGAGTAAATGAATGGGTAGTTACTGAGAAATTAGGAGATGCTCTCAAAACAAAATCAGGTG GCAAATCAGCTAAGAAGCCTCGAATCAAGATTGGCGAAAGGCAAGTTTTCTACACTTACAAGTAAAATGCAGTCCAATTT TGTTAAACTGGTCAGTGTGTGTATGGATACTAATTTAGTGTAACATTAATTTAGTGTAACATGAACGGATTTTCATCTCA ATTCAAAAGAAGAGTTGTGTCCACTTTTTATCTCGAAGTAAGTGTCAAAGTATGTTTACACTGGTGTTAATTGGTATCCA AACATAGCCTCAGAATGAGCAACATTGATATGAGCTAAATTAATACCCTCAACTTGGTGTATGCATTTGCATGATGCATA CTATTAAAAGTGTGTTTTTTTAGAACTACCGCTCACTATTTCATGTTTTCTACTTGTTTGTTGATGATAAACAGGCTTCA TTTCCTGGAACTTGGAGTCGGGACCTACCTATTTTTCTGTGGATACTATGACCTTGTCTTTGGGAGCAACCACTACTTCA TATACCTTTTCCTGCAATCTATAGCCTTCTTCATTGCAGGGGTTGGCTATGTTGGCGTTTTTGTTCCTAGCTCCTAA
CDS sequence (LotjaGi2g1v0156800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCATTTGGCAGCAAGCCAGGGCACCCTTGATTGTTCCAGTGCTGAAATTGCTAGTAATTTTGTGCCTAGCCAT GTCACTTATGTTATTTGTTGAGAAAGTTTATATGGGAATAGTCATACTCTTTGTGAAGGTGTTCAGGAACAAGCCAGAGA AGCATTACAAATGGGAACCACTCAGGGATGACATTGAGCTTGGAAACTCTGCATACCCCATGGTTCTGGTGCAAATCCCA ATGTACAATGAGAAAGAGGTGTATCAATTATCAATTGGTGCTGCATGTGGGTTATCATGGCCATCTGATAGAATTATTAT TCAAGTTCTTGATGATTCAACAGACCCAATCATTAAGAATATGGTGGAGGTGGAATGTCAGAGATGGGCCAGCAAAGGCC TAAACATAAAGTATGAGATCAGGGAGAACAGAAATGGGTACAAAGCTGGGGCTCTCAAAGCAGGCATGAAGCACAGCTAT GTCAAACTATGTGACTATGTGGCCATCTTTGATGCTGATTTCCAACCTGAGCCTAACTTCCTTTGGCGTACTATCCCTTT CCTCGCTCACAACCCACAAGTTGGGCTTGTCCAAGCTCGATGGAAATTCGAGCAGGAAGTTGGATCCTGCACCTATGCCT TCTTTGGTTTCAATGGCACAGCTGGTGTTTGGAGAATTTCAGCACTAAATGAAGCTGGTGGATGGAAAGACCGTACAACA GTTGAAGACATGGACCTGGCTGTCCGAGCTGGTCTCAAAGGATGGAAATTTGTGTATCTTAGTGACCTCAAGGTGAAAAA TGAATTACCAAGCACCTTCAAAGCCTACCGCTATCAGCAGCACCGGTGGTCATGTGGCCCGGCTAATCTTTTCAAGAAAG TGGCGATGGAAATCATAAGGAACAAGAAAGTCTCCATGTTGAAGAAATTCTATGTGATTTACAGTTTTTTCTTTGTCCGG AAGATCATAGCCCATGTGGTCACATTTGTATTCTACTGTGTCATTTTACCAGCAACTGTTCTAGTTCCAGAAGTGGAAGT TCCCAAATGGGGTTCTGTCTATATCCCTTCTATCATTACACTCCTTAATGCTGTTGGAACTCCAAGGTCACTCCACTTGT TGATATTCTGGATACCATTTGAAAACGTTATGTCAATGCATAGAACCAAGGCAACACTAATAGGTTTGCTAGAAGCAGGG AGAGTAAATGAATGGGTAGTTACTGAGAAATTAGGAGATGCTCTCAAAACAAAATCAGGTGGCAAATCAGCTAAGAAGCC TCGAATCAAGATTGGCGAAAGGCTTCATTTCCTGGAACTTGGAGTCGGGACCTACCTATTTTTCTGTGGATACTATGACC TTGTCTTTGGGAGCAACCACTACTTCATATACCTTTTCCTGCAATCTATAGCCTTCTTCATTGCAGGGGTTGGCTATGTT GGCGTTTTTGTTCCTAGCTCCTAA
Protein sequence (LotjaGi2g1v0156800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFIWQQARAPLIVPVLKLLVILCLAMSLMLFVEKVYMGIVILFVKVFRNKPEKHYKWEPLRDDIELGNSAYPMVLVQIP MYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKNMVEVECQRWASKGLNIKYEIRENRNGYKAGALKAGMKHSY VKLCDYVAIFDADFQPEPNFLWRTIPFLAHNPQVGLVQARWKFEQEVGSCTYAFFGFNGTAGVWRISALNEAGGWKDRTT VEDMDLAVRAGLKGWKFVYLSDLKVKNELPSTFKAYRYQQHRWSCGPANLFKKVAMEIIRNKKVSMLKKFYVIYSFFFVR KIIAHVVTFVFYCVILPATVLVPEVEVPKWGSVYIPSIITLLNAVGTPRSLHLLIFWIPFENVMSMHRTKATLIGLLEAG RVNEWVVTEKLGDALKTKSGGKSAKKPRIKIGERLHFLELGVGTYLFFCGYYDLVFGSNHYFIYLFLQSIAFFIAGVGYV GVFVPSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 203 | 203 | 5.5E-272 | – | |
| PANTHER | 1 | 203 | 203 | 5.5E-272 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 20 | 45 | 26 | - | – | |
| Phobius | 46 | 309 | 264 | - | – | |
| Gene3D | 65 | 270 | 206 | 5.3E-60 | ||
| SUPERFAMILY | 70 | 329 | 260 | 3.0E-42 | ||
| Pfam | 78 | 210 | 133 | 3.0E-13 | ||
| PANTHER | 203 | 486 | 284 | 5.5E-272 | – | |
| PANTHER | 203 | 486 | 284 | 5.5E-272 | – | |
| Pfam | 215 | 337 | 123 | 6.5E-15 | ||
| Phobius | 310 | 338 | 29 | - | – | |
| TMHMM | 316 | 338 | 23 | - | – | |
| Phobius | 339 | 357 | 19 | - | – | |
| TMHMM | 358 | 380 | 23 | - | – | |
| Phobius | 358 | 380 | 23 | - | – | |
| Phobius | 381 | 434 | 54 | - | – | |
| Phobius | 435 | 455 | 21 | - | – | |
| TMHMM | 435 | 457 | 23 | - | – | |
| Phobius | 456 | 460 | 5 | - | – | |
| Phobius | 461 | 484 | 24 | - | – | |
| TMHMM | 462 | 484 | 23 | - | – | |
| Phobius | 485 | 487 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0156800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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